SSR
Unigene
Annotation
Possible correlation
Reference
Associated with cell-wall
(Cernadas et
elongation
al. 2008)
ID
ES7
isotig003
Pectinesterase
64
ES16
isotig006
Probable LRR
Cellulose overproduction and
(Ghosh et al.
26
receptor-like
superior quality fiber
2013)
serine/threonine-protein
formation
kinase
ES62
isotig015
Heparanase-2, putative
51
ES90
ES95
isotig020
DUF26 domain-containing
28
protein 1 precursor
isotig021
40S ribosomal protein S5
Xylan synthesis
(Jensen et al.
2011)
20
ES106
isotig023
PGIP
06
Cell wall remodeling and
(Nguema-Ona
reorganization of the
et al. 2013)
cellulose-xyloglucan network
ES149
isotig028
Glucomannan
Hemicelluloses (xylan and
(Zhong and
98
4-beta-mannosyltransferas
glucomannan)
Ye 2015)
Putative expansin-B2
Fiber development
(Li et al. 2015)
GASA-like protein
May promote fiber elongation
(Chen et al.
through modulating
2012)
e9
ES171
isotig031
28
ES181
isotig031
77
H2O2 levels
ES233
isotig036
Glycosyltransferase
(Li et al. 2011;
90
Qin et al.
2013)
ES261
isotig038
Importin alpha
84
ES347
ES576
ES605
isotig053
Adenine
32
phosphoribosyltransferase
isotig079
Glycosyl hydrolase family
10
9
isotig081
Pectinesterase-2 precursor
37
ES611
isotig081
94
Polygalacturonase
Formerly known as
cellulase, break down the
cellulose molecule into
monosaccharides ("simple
sugars") such as
beta-glucose, or shorter
polysaccharides and
oligosaccharides.
(Varnai et al.
Associated with cell-wall
(Cernadas et
elongation
al. 2008)
A significant carbohydrate
(Jones et al.
component of the pectin
1972)
2014)
network
ES661
isotig085
Glucan
60
endo-1,3-beta-glucosidase
Cell wall thickness
(Schlosser et
al. 2008)
13
ES687
ES760
isotig087
Serine
98
hydroxymethyltransferase
isotig095
Probable pectate lyase 22
41
ES766
isotig096
Callose synthase
Involved in plant cell wall
(Tamaru and
degradation
Doi 2001)
Cell wall components
(Pirselova and
13
Matusikova
2013)
ES772
ES837
ES906
isotig096
Thaumatin-like
Cell wall development
(Munis et al.
46
protein-like
isotig103
DUF26 domain-containing
14
protein 2 precursor
isotig108
Lignin-forming anionic
Catalyze the formation of the
(Lagrimini et
84
peroxidase-like
lignin polymer and form rigid
al. 1987)
2010)
Xylan synthesis
(Jensen et al.
2011)
cross-links between lignin,
cellulose, and extensin in the
secondary plant cell wall
ES1047
isotig128
Hypothetical protein
45
ES1215
isotig148
Hypothetical protein
88
ES1305
isotig164
Hypothetical protein
36
ES1308
isotig164
Hypothetical protein
84
ES1328
isotig167
Hypothetical protein
58
ES1431
isotig068
14-3-3f protein
46
ES1509
isotig104
Beta-expansin 3 precursor
Fiber development
(Li et al. 2015)
35
ES1519
isotig119
Hypothetical protein
55
ES1628
HRMYN
Probable pectinesterase
Associated with cell-wall
(Cernadas et
UX02II8
68-like
elongation
al. 2008)
GDSL esterase/lipase
Cell wall-associated
(Chepyshko et
HX
ES1805
HRX1M
BH01ED
al. 2012)
SQX
ES1851
HRX1M
Cysteine-rich repeat
Related to the DUF domain
(Jensen et al.
BH02FP
secretory protein 3
protein
2011)
58M
ES2055
HRX1M
Serine carboxypeptidase
BH02I8
family protein
XNE
ES2200
HS0W81
Gibberellin-regulated
Important plant hormone in
(Withanage et
S01AST
protein 3 precursor
regulating fiber development
al. 2015)
Polygalacturonase
A significant carbohydrate
(Jones et al.
S01BP7
component of the pectin
1972)
G7
network
F4
ES2283
HS0W81
Cernadas RA, Camillo LR, Benedetti CE,
(2008) Transcriptional analysis of the sweet orange
interaction with the citrus canker pathogens Xanthomonas axonopodis pv. citri and
Xanthomonas axonopodis pv. aurantifolii. Mol Plant Pathol 9:609-631
Chen XD, Guo WZ, Liu BL, Zhang YM, Song XL, Cheng Y, Zhang LL, Zhang TZ (2012) Molecular
mechanisms of fiber differential development between G. barbadense and G. hirsutum
revealed by genetical genomics. PloS one:e30056
Chepyshko H, Lai CP, Huang M, Liu JH, Shaw, JF (2012) Multifunctionality and diversity of GDSL
esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from
bioinformatics analysis. BMC Genomics 13:309
Ghosh JS, Chaudhuri S, Dey N, Pal A (2013) Functional characterization of a serine-threonine protein
kinase from Bambusa balcooa that implicates in cellulose overproduction and superior quality
fiber formation. BMC Plant Biol 13:128
Jensen JK, Kim H, Cocuron JC, Orler R, Ralph J, Wilkerson CG (2011) The DUF579 domain
containing proteins IRX15 and IRX15-L affect xylan synthesis in Arabidopsis. Plant J
66:387-400
Jones TM, Anderson AJ, Albersheim P (1972) Hostpathogen interactions IV, studies on the
polysaccharide-degrading enzymes secreted by Fusarium oxysporum f. sp. lycopersici,
Physiol Plant Pathol 2:153-166
Lagrimini LM, Burkhart W, Moyer M, Rothstwin S (1987) Molecular cloning of complementary DNA
encoding the lignin-forming peroxidase from tobacco: Molecular analysis and tissue-specific
expression. P Natl Acad Sci USA 84:7542-7546
Li QZ, Min DY, Wang JPY, Peszlen I, Horvath L, Horvath B, Nishimura Y, Jameel H, Chang HM,
Chiang VL (2011) Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa
caused reduced mechanical strength and xylan content in wood. Tree Physiol 31:226-236
Li Y, Tu LL, Ye ZX, Wang MJ, Gao WH, Zhang, XL (2015) A cotton fiber-preferential promoter,
PGbEXPA2, is regulated by GA and ABA in Arabidopsis. Plant Cell Rep 34:1539-1549
Munis MFH, Tu LL, Deng FL, Tan JF, Xu L, Xu SC, Long L, Zhang, XL (2010) A thaumatin-like
protein gene involved in cotton fiber secondary cell wall development enhances resistance
against Verticillium dahliae and other stresses in transgenic tobacco. Biochem Bioph Res Co
393:38-44
Nguema-Ona E, Moore JP, Fagerstrom AD, Fangel JU, Willats WGT, Hugo A, Vivier MA (2013)
Overexpression of the grapevine PGIP1 in tobacco results in compositional changes in the
leaf arabinoxyloglucan network in the absence of fungal infection. BMC Plant Biol 13:46
Pirselova B and Matusikova I (2013) Callose: the plant cell wall polysaccharide with multiple
biological functions. Acta Physiol Plant 35:635-644
Qin LX, Rao Y, Li L, Huang JF, Xu WL, Li XB (2013) Cotton GalT1 encoding a putative
glycosyltransferase is involved in regulation of cell wall pectin biosynthesis during plant
development. PloS one 8: e59115
Schlosser J, Olsson N, Weis M, Reid K, Peng F, Lund S, Bowen P (2008) Cellular expansion and gene
expression in the developing grape (Vitis vinifera L.). Protoplasma 232:255-265
Tamaru Y and Doi RH (2001) Pectate lyase A, an enzymatic subunit of the Clostridium cellulovorans
cellulosome. P Natl Acad Sci USA 98:4125-4129
Varnai A, Makela MR, Djajadi DT, Rahikainen J, Hatakka A, Viikari L (2014) Carbohydrate-binding
modules of fungal cellulases: occurrence in nature, function, and relevance in industrial
biomass conversion. Adv Appl Microbiol 88:103-165
Withanage SP, Hossain MA, Kumar MS, Roslan HAB, Abdullah MP, Napis SB, Ab Shukor NA (2015)
Overexpression of Arabidopsis thaliana gibberellic acid 20 oxidase (AtGA20ox) gene
enhance the vegetative growth and fiber quality in kenaf (Hibiscus cannabinus L.) plants.
Breeding Sci 65:177-191
Zhong R and Ye ZH (2015) Secondary cell walls: biosynthesis, patterned deposition and transcriptional
regulation. Plant Cell Physiol 56:195-214