Human Biology • Science is the study of the natural world • Biology is the study of living things • Living things have a different molecular composition than nonliving things • Everything is composed from the same set of around 100 different elements • Living organisms combine elements in unique ways, to make molecules • Living things require energy and raw materials (molecules) • Metabolism consists of the physical and chemical processes involved in transforming energy & molecules so that life can be maintained • Living things are made of cells • Cell is the smallest unit that exhibits all the characteristics of life • Cells arise from existing cells • Some organisms exist as only one cell • Living things maintain a relatively constant internal environment known as ‘homeostasis’ • Living things respond to their external environment to keep homeostasis relatively constant • Living things grow & reproduce • Populations of lining things evolve to better survive environmental changes • Biologists grouped living things into 5 kingdoms: • Monera – bacteria – have no nuclei • Animalia • Plantae have green pigment called chlorophyll to capture energy of sunlight to use in photosynthesis • Fungi are decomposers • Protista are unicellular or simple multicellular eukaryotes • Animals are divided into subgroups • ‘Vertebrate’ is the subgroup that humans belong to • ‘Species’ are the smallest units of the classification system populations of organisms with similar physical & functional characteristics that interbreed and produce fertile offspring • Things that differentiate humans: • Bipedal – we are mammals that prefer to stand upright and walk on two legs • Opposable thumbs • Large brain mass relative to body size • Capacity for complex language • Evolution is what caused the diversity of life • It is an unpredictable and natural process of descent over time due to genetic modifications • Populations of organisms undergo slow changes that make them different from their ancestors, caused by mutations to their genes • Evolution is affected by natural selection, historical events, changing environments, and chance • Microevolution is a result of genetic changes that create a new species from an existing one • Macroevolution is change that happens to many species as a result of an environmental event • Charles Darwin hypothesis that life arose and descended from one early life form – descent with modification from the original life • Evidence from fossils – remnants of organisms covered with layers of sediment (stratification), which aids in dating over time • On organisms, homologous structures have a common origin, analogous structures have a common function, and vestigial structures are ones that evolved to have no current important function • Similarities are seen in comparisons of embryos and development of organs • Similarities in proteins and genes show relationships • Continental drift, natural selection, and extinctions from environmental events affect gene flow • Humans are primate mammals • Primates have 5 fingers, flat nails, forward-facing eyes and include lemurs, monkeys, apes, and humans (hominids with bigger brains) • All have opposable thumbs • Apes are a sub-group – gibbons, orangutans, gorillas, chimps • Ardipithecus ramidus – primates diverged from apes 4.4 million years ago in Africa – ‘Ardi’ • Australopithecus afarensis an African hominid is a direct ancestor of humans, 3.2 million years ago – Lucy was found in Ethiopia They walked upright, had thick teeth enamel, males were much larger than females, and they had long arms to travel in trees • Homo habilis – toolmakers, 2.4 million years ago, with larger brains, used stone tools • Homo erectus, from 1.8 million years ago, migrated to Java and China, used specialized tools, and engaged in more socialization • Homo heidelbergensis gave rise to the Neanderthals, discovered in Germany • Homo sapiens (today’s human) evolved from Homo erectus in Africa, crossed to Yemen, then migrated to all parts of the world • Homo floresiensis – another extinct species, discovered in Indonesia in 2004 • Science is defined as knowledge of the natural world • The process used to get that knowledge is the called the scientific method • Get an idea & test it • Observe & generalize – inductive reasoning • Formulate an hypothesis • Make a testable prediction – deductive reasoning ‘if…, then…’ • Experiment or observe • Draw conclusions • Experimental method: • Controlled experiments – everything is similar (controlled) except for one thing - the controlled variable • Modify the hypothesis and repeat • Make the findings known • Well tested hypothesis becomes a theory • Critical thinking requires skepticism • Matter is anything that has mass and occupies space • An element is the fundamental unit of matter that can’t be further broken down into different structures • An atom is the smallest unit of any element that still retains its physical and chemical properties • The nucleus of an atom is made up of positive charged protons and neutral particles called neutrons • Atomic number = number of protons • Atomic weight = average number of protons plus neutrons for that element • Electrons – small negatively charged particles that orbit the nucleus • Electrons orbit in shells: • 2–8–8 • In a neutral atom # protons = # electrons • Isotopes of an atom have different numbers of neutrons • Some are unstable because they give off energy until they become more stable • Radioisotopes give off radiation but are also useful • They decay into other elements at a set rate, are used to see the age of fossils • Ions of an atom have a different number of electrons, so they have a positive charge if there are less electrons, or negative charge if there are more electrons • • • • Molecules are atoms attached to each other Energy is the capacity to do work Stored energy is called potential energy Energy in motion is called kinetic energy • Atoms are most stable when their outer electron shell is completely filled • Covalent bonds involve sharing electrons to fill the outer shell • This is one way to connect atoms to make a molecule • Ionic bonds occur between oppositely charged ions, that are weaker than covalent bond and break down in aqueous solutions to form electrolytes • Hydrogen bonds are weak ionic bonds when there is attraction between positive and negative ends of the molecules • Important example is water • Living organisms contain primarily 6 elements: oxygen, carbon, hydrogen, nitrogen, calcium, phosphorus • All life depends on water • Water molecules are polar with (+) & (-) sides (poles) • It is a liquid at body temperature • Water can absorb and hold heat energy which prevents dramatic changes in body temperature – 98.6 or 37 centigrade • Water is the universal biological solvent – organism chemicals are dissolved in water • Polar molecules are attracted to water so they are called hydrophilic • Nonpolar molecules are repelled by water, called hydrophobic • A molecule of water can break down into a hydrogen and hydroxide ion • pH measures hydrogen ion concentration, as the negative log of its concentration • Water is pH of 7.0, which is neutral • Acids are solutions that break down to form hydrogen ions • Bases break down to form hydroxide ions or to get the ability to combine with a hydrogen ion • Acids have pH less than 7 • Bases have pH greater than 7 • Blood pH is 7.35 – 7.45 • Buffers minimize changes in pH by either taking up or adding hydrogen ions • Organic molecules contain carbon and are held together by covalent bonds • Carbon (C) makes up 0.03% of the earth and 18% of the body’s weight • C has 6 electrons, 2 in inner orbit, 4 in outer orbit • Forms covalent bonds • Cells build macromolecules using dehydration synthesis and break them down using hydrolysis • Carbohydrates are used by living organisms for energy and structural support • Monosaccharides are the simplest form and link to create oligosaccharides • Important carbohydrates are glucose, fructose, sucrose, ribose, deoxyribose • Polysaccharides are joined in straight or branched chains by dehydration synthesis • Glycogen is storage polysaccharide of glucose in animals • Starch is equivalent in plant • Cellulose is a glucose polysaccharide used for structure by plants that we do not have the enzymes to break down • Lipids are hydrophobic – insoluble in water • Triglycerides are made from glycerol and 3 fatty acids • Saturated fats have 2 hydrogens for each carbon • Unsaturated fats (oils) have double bonds between carbons • Lipid is stored in adipose tissue • phospholipids have a phosphate group substituting for one fatty acid • Steroids are also hydrophobic • Have backbone of three 6 carbon rings and one 5 carbon ring • Cholesterol is most common form & is an important component of cell membranes and steroid hormones • Proteins are strings of amino acids – there are 20 different amino acids • Each has an animo group, carboxyl acid group, and an R group • R groups can be neutral, polar, negative, positive, nonpolar • Our cells can make 11 amino acids and an important cell function is to form polypeptides & proteins • Proteins are linked amino acids • Primary structure is the simple sequence of amino acids • Secondary structure is how the chain of amino acids interacts with each other • Tertiary structure is the outward appearance of the protein from hydrogen bonding, disulfide covalent bonds between cysteines, affected by environment – hydrophobic, hydrophilic parts • Quarternary structure – how different polypeptides associate with each other • Enzymes are proteins that help with biochemical reactions – are catalysts (speed up the reaction) • Take reactants (substrates) and turn them into products by using their shapes and charges (+ or -) • Cells are enclosed by a plasma membrane • Raw materials, energy, waste enter & leave only by crossing the membrane • Eukaryote cells have an internal nucleus enclosed by nuclear membrane • The cell membrane is a phospholipid bilayer with cholesterol & proteins, called a fluid mosiac – because it is not rigid • The cell membrane is selectively permeable • Things cross the membrane by diffusion, osmosis, facilitated transport (all follow a concentration gradient and don’t take energy), or active transport – movement against a concentration gradient which requires energy • Phagocytosis, pinocytosis, use of receptor proteins are other methods • If the cell is hypotonic, (like when the body is dehydrated) it loses fluids to surrounding solution & shrinks, if hypertonic (like when the body is bloated) the opposite happens • isotonic means the same concentration as the surrounding solution • Organelles are working units in the cell, and include the nucleus, ribosomes, rough and smooth endoplasmic reticulum, golgi apparatus, lysosomes, perixosomes, vesicles, and mitochondria • Flagella, cilia, microvilli, centrioles are structures associated with the cell • The nucleus is the part of the cell that contains the chromosomes • Chromosomes are made up of DNA, humans have 23 pairs altogether, 22 of autosomes, and one pair of sex chromosomes • There are pairs because of one is inherited from the father and one from the mother • Areas of the chromosomes called genes hold the instructions for making specific proteins – the genetic code • Genes of the paired chromosomes are called alleles, can be alike (homozygous) or different (heterozygous), one from the mother, one from the father; can be dominant or recessive; can affect appearance or function • Nucleic acids store genetic information • DNA is the abbreviation for DeoxyriboNucleic Acid – and it makes up genes that contain instructions for producing RiboNucleic Acid • RNA contains instructions for making proteins • Both are made of nucleotides that have a 5 carbon sugar, a nitrogenous base, and phosphate groups • DNA bases are adenine, thymine, cytosine, guanine • A-T C-G • Genetic code is on one of the DNA strands, the other side holds it together • Every 3 bases codes for a specific amino acid • These are instructions for formation of a strand of messenger RNA that is specific for the amino acid sequence of proteins • RNA bases are adenine, uracil, cytosine, guanine • Messenger RNA brings the genetic information to either ribosomes or rough endoplasmic reticulum for protein synthesis • At the ribosome, transfer RNA matches the messenger RNA code and brings amino acids, which become linked by dehydration synthesis to form proteins • Proteins that get secreted go from the rough endoplasmic reticulum to the golgi apparatus, where they are altered into the final product • Lysosomes are membrane bound proteins that function in waste management • Smooth endoplasmic reticulum functions in different ways - as storage containers for ions, sites of detoxification, sites of lipid synthesis or breakdown, depending on the cell’s needs • Metabolism – chemical reactions in the organism, either anabolism where molecules get assembled into larger molecules that contain more energy – a process that requires energy; or catabolism – larger molecules are broken down, which releases energy • Energy is stored in ATP • ATP – Adenosine TriPhosphate – has adenine, ribose, and three phosphate groups • phosphate group bonds store huge amounts of potential energy that is released when the bond is broken • Then ATP becomes adenosine diphosphate (ADP) and inorganic phosphate • Both proteins in the cytoplasm & the mitochondria make ATP from glucose breakdown • Mitochondria produce huge amounts ATP, and there are more in cells that require more energy • They are thought to originate from bacteria that became incorporated into cells many millions of years ago • Glucose chemical formula is C6H12O6 • Glycolysis is a process that happens with enzymes in the cytoplasm • Glucose is split into 2, three carbon molecules called glyceraldehyde-3phosphate, producing 2 ATP – • It gets converted to pyruvate, then lactic acid if no oxygen is available • High energy hydrogen ions and electrons are taken by nicotinamide adenine dinucleotide (NAD) • Pyruvate enters the mitochondria & is converted to acetyl CoA to enter the citric acid (Krebs) cycle, that gives off CO2 & makes ATP and more NADH & a similar FADH2 • NADH & FADH2 bring hydrogens & electrons to the electron transport chain • Concentration of hydrogen is higher in the outer compartment than in the matrix • Molecules pass hydrogens through the electron transport chain into the outer compartment • Oxidative phosphorylation – hydrogens diffuse back into the matrix thru a protein that uses the energy from diffusion to make ATP as they go into the inner compartment - makes 34 ATP and water • Fats & proteins can also be used for energy • Fats carry more than twice the energy of carbohydrates • Triglycerides are broken down to glycerol and fatty acids • Glycerol can be converted to glucose or pyruvic acid • Fatty acids become acetyl groups for citric acid cycle • Proteins can enter after amine group is broken off • Vitamins are important chemicals essential for normal function • The body makes vitamin D in our skin • Bacteria in the colon make vitamin K, B6, and biotin • Fat soluble vitamins are absorbed if there is fat in the diet – vitamins A & E & D & K are fat soluble • Water-soluble vitamins are easy to absorb but are excreted rapidly in the urine, and all the B vitamins are coenzymes in carbohydrate, nucleic acid, or amino acid metabolism