Unit 3: Genetics • • • • The Cell Cycle + DNA structure/function Mitosis and Meiosis Mendelian Genetics (aka - fun with Punnett squares) DNA replication Yesterday’s Exit Ticket MITOSIS MEIOSIS preceded by replication of chromosomes? yes yes # of rounds of cell division 1 2 # of daughter cells 2 4 same as parent cell half of parent cell daughter cells genetically identical to parent cell? yes no sister cells thus produced identical to one another? yes no happens in diploid cells, haploid cells, both, or neither? both diploid # of chromosomes in daughter cells compared to parent cell crossing over (synapsis)? (depending on organism) no yes Today’s Agenda • Where does variation come from? • Mendelian Genetics, Part One Sources of genetic variation • Mutations (changes in an organism’s DNA) are the original source of all genetic variation • Mutations create different versions of genes called alleles Clarity check: homologous chromosomes SAME gene, different ALLELES Gene for hair color; Allele for blonde hair Gene for hair color; allele for brown hair Sources of genetic variation • The behavior of chromosomes during meiosis and fertilization reshuffles alleles and chromosomes every generation • Three mechanisms contribute to genetic variation: a) Independent assortment of chromosomes b) Crossing over c) Random fertilization Fig. 13-8b Sources of genetic variation a) Independent assortment • Homologous pairs of chromosomes orient randomly during Meiosis I maternal and paternal homologs assort into daughter cells independently of the other pairs Metaphase I of meiosis I Blue can be on top or bottom Fig. 13-11-2 Sources of genetic variation a) Independent assortment Possibility 2 Possibility 1 with n = 2 there are 4 possibilities for the lineup during Meiosis II 4 possible assortments of chromosomes in the gametes Fig. 13-11-3 Sources of genetic variation a) Independent assortment Possibility 2 Possibility 1 Metaphase II Daughter cells Combination 1 Combination 2 Combination 3 Combination 4 Sources of genetic variation a) Independent assortment • “2n rule”: the number of possible chromosome sorting combinations = 2n For humans (n = 23), there are 223 = 8,388,608 possible combinations of chromosomes based on independent assortment alone! Sources of genetic variation b) Crossing over (Prophase of Meiosis I) • homologous chromosomes pair up gene by gene and exchange homologous segments • This combines alleles that originated from two (grand)parents into a single chromosome blond hair from G’pa blue eyes from G’pa red hair from G’ma red hair from G’ma red hair from G’pa brown eyes from G’ma brown eyes from G’ma blue eyes from G’pa Mom’s ovary cell b) crossing over Sources of genetic variation Early in Meiosis I Pair of homologs during Meiosis I (at anaphase I) Nonsister chromatids held together during synapsis A single crossing over event leads to 4 genetically unique daughter cells! during Meiosis II (at anaphase II) Daughter cells Recombinant chromosomes Human cells → n = 23 What is n for the cells shown here? A.1 B.2 C.3 D.4 E.5 1 2 Which cells in this picture are haploid? A.all B.none C.those above line #1 D.those below line #1 E.only those below line #2 A detailed look at meiosis FIRST CELL DIVISION = “MEIOSIS I” 2nd CELL DIVISION = “MEIOSIS II” Sources of genetic variation c) Random fertilization 8.4 million possible gametes 8.4 million possible gametes > 70 trillion possible offspring!!! Today’s Agenda • Where does variation come from? • Mendelian Genetics, Part One Foundations of Genetics Chapter 14 Outline 1. The work of Gregor Mendel 2. Probability and genetic outcomes 3. Ah, if only it were so simple: complications on genes and traits 14-2a 1. Fig. Mendel a) The scientific method 1 TECHNIQUE: “crossing” or “hybridizing” true-breeding varieties 2 Parental generation (P) Stamens Carpel 3 4 14-3-3 1. Fig. Mendel EXPERIMENT P Generation (true-breeding parents) F1 Generation (hybrids) Purple flowers White flowers All plants had purple flowers F2 Generation 705 purple-flowered plants 224 white-flowered plants 1. Mendel Making sense of the data: Why were ALL the F1 flowers purple? Why were some F2 flowers white? Why was the ratio in the F2 generation 3:1? To explain the data, Mendel developed a model 1. Mendel Mendel’s explanatory framework Mendel’s Model: 4 related hypotheses (remember, DNA had not yet been discovered!) 1. Alternative versions of heritable “particles” (i.e., different alleles of the same gene) 1. Mendel Mendel’s explanatory framework Mendel’s Model: 4 related hypotheses 1. Alternative versions of heritable “factors” (i.e., alleles) 2. For each character an organism inherits two alleles, one from each parent 14-4 1. Fig. Mendel Mendel’s explanatory framework Diploid organisms Allele for purple flowers Location of lower color gene Allele for white flowers Homologous pair of chromosomes 1. Mendel Mendel’s explanatory framework Mendel’s Model: 4 related hypotheses 1. Alternative versions of heritable “factors” (i.e., alleles) 2. For each character an organism inherits two alleles, one from each parent (i) all F1 purple (ii) some F2 white, (iii) F2 purple:white ratio 3:1 1. Mendel Mendel’s explanatory framework Mendel’s Model: 4 related hypotheses 1. Alternative versions of heritable “factors” (i.e., alleles) 2. For each character an organism inherits two alleles, one from each parent 3. If the two alleles at a locus differ, then one (the dominant allele) determines the organism’s appearance, and the other (the recessive allele) has no noticeable effect on appearance (i) all F1 purple (ii) some F2 white, (iii) F2 purple:white ratio 3:1 1. Mendel Mendel’s explanatory framework Mendel’s Model: 4 related hypotheses 1. Alternative versions of heritable “factors” (i.e., alleles) 2. For each character an organism inherits two alleles, one from each parent 3. Some alleles are “dominant”, others “recessive” 4. “Law of segregation” = the two alleles for a character are separated (segregated) during gamete formation and end up in different gametes 1. Mendel b) Mendel’s explanatory framework Mendel’s Model: 4 related hypotheses 1. Alternative versions of heritable “factors” (i.e., alleles) account for variations in inherited characters 2. For each character an organism inherits two alleles, one from each parent 3. Some alleles are “dominant”, others “recessive” 4. “Law of segregation” (i) all F1 purple (ii) some F2 white, (iii) F2 purple:white ratio 3:1 Outline 1. The work of Gregor Mendel 2. Probability and genetic outcomes 3. Ah, if only it were so simple: complications on genes and traits 2. Probability and genetic outcomes F1 individuals and their gametes EXPERIMENT P Generation (true-breeding parents) F1 Generation (hybrids) RR rr homozygous Purple flowers White flowers All plants had purple flowers 2. Probability and genetic outcomes F1 individuals and their gametes F1 Generation (hybrids) All plants had purple flowers Possible gamete types (with respect to flower color)? Fig. 14-5-3 R P Generation Appearance: Genetic makeup: Purple flowers RR Gametes: White flowers rr r Rr r Rr F1 Generation Purple flowers Rr 1/ 2 Gametes: 1/ 2 R R r RR Rr Rr rr R Eggs r 3 1 r heterozygous Sperm F2 Generation Rr r R Appearance: Genetic makeup: R Rr Fig. 14-5-3 Mendel’s “Law” of segregation is used to construct a “Punnett square” this simple square tells you the expected frequencies of genotypes and phenotypes from a particular cross Fig. 14-5-3 P Generation Appearance: Genetic makeup: Purple flowers RR Gametes: White flowers rr r R F1 Generation Appearance: Genetic makeup: Purple flowers Rr 1/ 2 Gametes: 1/ 2 R Sperm F2 Generation R r RR Rr Rr rr R Eggs r 3 1 r Reviewing the numbers with respect to this flower color gene: 2 alleles x 2 alleles = 4 outcomes only 3 distinct genetic types, or genotypes, 1:2:1 only two distinct traits, or phenotypes, 3:1 Testcross: a useful tool How can we figure out the GENOTYPE of a purple flower? could be PP or Pp Testcross: a useful tool How can we figure out the GENOTYPE of a purple flower? (A) PP x (B) Pp PP or Pp? What do we cross the purple flower with? (C) pp Today’s Exit Ticket • Create and complete two Punnet squares: 1) A testcross of a heterozygote (rr x Rr) 2) A testcross of a homozygous dominant individual (rr x RR) • Explain why using a homozygous recessive individual is useful for distinguishing between Rr and RR.