Metrology (1310) Purpose: This exercise is to introduce students to the metric system and common laboratory equipment they will be working with during the course. You are to record the steps performed and your results in your laboratory notebook following cGMP documentation guidelines. Materials Meter sticks, thermometers, balance, 25ml, 100ml graduated cylinders, 250ml beakers, pennies, test tubes, deionized water, spatulas, 5ml, 10ml, pipette, aids, hydrogen peroxide, potato, balance, mortar and pestle. The Metric System (you don’t have to record this section) Just as scientists use unique names to identify a single species that is recognized globally, scientists use the metric system as a universal measurement system. The world for that matter, the sole exception being the United States, uses the metric system as it logical and units are easily converted. Thus, since this is a science class we will be using the metric system exclusively to make our measurements. The metric system has four base units: Base Unit Measurement Meter (m) Gram (g) Liter (L) Celsius (°C) length mass volume temperature We can simply add prefixes to the base unit to change the value of the measurement by factors of ten. Prefix Multiply Divide kilo (k) 1000 hecto (h) 100 deka (da) 10 Base deci (d) centi (c) milli (m) micro (µ) 1 1 0.1 0.01 0.001 0.000001 The Greek prefixes to the left of the base are larger so numbers get smaller as you move the decimal to the left. The Latin prefixes to the right are smaller so the numbers get larger as you move the decimal to the right. Hint: an easy way to remember the prefixes is this mnemonic King kilo (k) Hector hecto (h) Warila 2011 Died deka (da) By Base Drinking deci (d) Curdled centi (c) Milk milli (m) Monday micro (µ) Page 1 Example: we have a large number with millimeters as the unit = 7550mm. A good unit to convert to would be the base unit of the meter. 7550 x 0.001 = 7.550m You can also perform this conversion using our memory device and counting the number of steps from your current unit to the desired unit. Move the decimal point the same number of steps in the same direction you did when counting prefixes. There are three steps to the left from milli to the base. We move the decimal point three to the left. 7550. becomes 7.550 We move the decimal six steps to the right when converting 0.00123Kg to mg. 0.001230 becomes 1230. Hint: Be careful of the micro (µ) prefix that we will use in class. It is three steps to the right of the milli (m) prefix or is 1000 times smaller! Practice Problems 100mm to cm ___________ 5000Kg to g ___________ 0.00100µL to ml ___________ 10daL to dl ___________ 701.30hm to cm ___________ *50cc to ml ___________ 3 *250mL to cm ___________ *Hint: Think of these measurements in three dimensions Accuracy and Precision When making measurements in the laboratory is it important to consider the difference between accuracy and precision. Accuracy is the proximity of the measurement to the true value. Precision is the repeatability of the measurements. Warila 2011 Page 2 The first target exhibits accuracy but you would question the experimenter’s techniques as they are inconsistent. The second target is inaccurate but precise. The experimenter is performing the procedure consistently and may not be at fault. It may be the procedure itself. You should strive for both accuracy and precision in the laboratory, and be able to interpret your data if one or both are lacking. Taking Measurements When measuring a piece of equipment you are expected to report the value to one more significant figure (decimal place) than the graduations allow. What is the correct measurement? __________cm Why? When reading liquid volumes in a graduated cylinder or pipette you need to read the bottom curvature of the water or the meniscus. Read the two volumes below to the greatest accuracy. Grad cylinder____________mL Warila 2011 Pipette_____________ml Note- pipettes are calibrated as TD or (to deliver)! Page 3 Test your knowledge - Draw a line matching the picture with the name Pipette aid Flask plastic pipette beaker microscope slide micropipette test tube mortar/pestle hot plate stirrer Petri dish scalpel test tube holder Procedure (begin recording data in your notebook here include procedure section and data section. Good idea to break into sections A, B, C etc.) Part A - Degree of Accuracy 1) Observe the smallest place value represented by the lines on your meter stick (on the metric side). Record this value, with the appropriate unit as the "smallest certain place value" in the form of data table A in your notebook. 2) Add one decimal place value (i.e. tenth becomes hundredth, or hundredth becomes thousandth) to the value from the previous step. This is your estimation digit for this instrument. Record this value, with the appropriate units, "in data table A in your notebook. 3) Repeat steps 1 and 2 for each of the following instruments; thermometer, balance, 25ml graduated cylinder, 100ml graduated cylinder. Record these values, with the appropriate units, in the form of a data table your notebook. Suggested Table A for notebook Instrument Meter stick Thermometer Balance 25ml grad cylinder 100ml grad cylinder Warila 2011 Smallest place value Estimated value Page 4 Part B - Measuring Mass 1) 2) 3) 4) 5) 6) Tare your calibrated balance. Determine the mass of a clean, dry 25ml graduated cylinder. Record this in the form of a data table B in your notebook. Add 10.0 ml of DI water to the graduated cylinder. Dry the outside of the cylinder to avoid massing extra water. Mass the graduated cylinder with the water inside. Record this value in data table B in your notebook. Is there another way to do this with fewer steps? Explain. a) Using an electronic balance, find out how many pennies it takes to make 10 grams and round to the closest penny if necessary. b) How many grams does 10 pennies weigh rounded to 2 significant digits? Part C - Measuring Volume 7) 8) 9) 10) 11) 12) Measure out a random sample of water in the 25ml graduated cylinder. Record the volume and units, to the highest degree of accuracy in Table C in your notebook. Have your lab partners verify the accuracy of the volume of water. Repeat steps 9 and 10 with the 100ml graduated cylinder. Carefully place a penny in the 100ml graduated cylinder. It must be completely submerged, and the volume must be no greater than 100ml. Record the new water level and determine the volume of the penny. Using a 10ml and 5ml graduated pipettes and manual pipette aid, fill a tared test tube in a beaker with 25.0ml DI water, and determine the mass of the water only. Density of water is 1.00 g/ml. What is the mass of your water? Was your pipetting accurate? Part D –Potato Catalase Hydrogen peroxide H2O2 is a byproduct of cellular metabolism and can be damaging to cells if it is not converted into water and oxygen in the presence of catalase. 2H2O2 + catalase---------> 2H2O + O2 Catalase is an enzyme. Enzymes are biological catalysts that lower the activation energy of reactions and allow them to proceed faster or to even take place at all. We are going to use naturally occurring catalase from red potatoes to breakdown our H2O2. This will result in the formation of foam from the O2 that is released. We can estimate catalase activity indirectly by the height of the foam. This is an introductory experiment to measure enzyme activity and you will need to practice your metrology skills learned earlier in this lab. Attempt to be both accurate and precise when measuring your reagents as small errors can lead to poor data! Procedure 1. You will find red potatoes on the center bench in the lab. Take about half of a small potato and dice it into small pieces (be careful). 2. Grind the diced cubes with a mortar and pestle until there and no large pieces. Warila 2011 Page 5 3. Using the electronic balance, weigh the potato and place into the test tubes according to table 1. 4. This is a good place to formulate your hypothesis using the values in the table below. What’s going to happen and why? Will all the tubes be the same? Hypothesis? 5. Pour about 30ml of H2O2 into a 50ml beaker. 6. Use a motorized pipettor and pipette and add 5mL of H2O2 from the beaker to test tube 1. 7. Quickly but accurately repeat for the remaining 4 tubes. Table I Tube number Potato amount Amount H2O2 1 0.0g 2 0.2g 3 0.5g 4 1g 5 2g 5mL 5mL 5mL 5mL 5mL 8. You should see foam being generated in most of the tubes. 9. Wait ten minutes and then using a metric ruler measure the height of the foam of each tube in cm and record in table 2. Table 2 Tube number Potato amount Foam Height cm 1 0.0g 2 0.2g 3 0.5g 4 1g 5 2g What we just tested is the effect of varying the amount of enzyme available to breakdown the substrate or H2O2 which did not change. Did varying the amount of potato (enzyme) make a difference? Generate an XY scatter plot of the results in Excel. Graphing in Excel The first thing to consider when graphing is deciding what the dependent and independent variables are. The independent variable (x-axis) is the one that is predetermined by the parameters of the experiment. The dependent variable (y-axis) is the one we are testing for and don’t know yet. In the potato enzyme experiment, the amount of potato was the independent variable and the foam height (enzyme activity) was the dependent. 1. Open an Excel spreadsheet. Warila 2011 Page 6 2. In cell A1 type the first value of the independent variable (x-axis) 3. Place all the remaining x-values in order directly underneath A2, A3, A4, A5, etc. 4. In cell B1 type the first value of the dependent variable. 5. Place all the remaining y-values in order directly underneath B2, B3, B4, B5, etc. 6. Highlight only the cells with information in them. 7. Locate the chart wizard icon or use the insert button. 8. Select scatter and a chart type with connected data points (second row to right). 9. You should see your chart. Look at the trend. Does it make sense? 10. Go to the layout tab and add a descriptive but concise chart title and axes labels. 11. You may wish to plot more than one y against a particular x. 12. Simply add the second y values in column C, third in column D etc. Finally conclude your notebook entry with any notable results or possible errors that need documenting. Also, it is here you can also suggest issues with the protocol and some possible future solutions. Be fairly brief. Warila 2011 Page 7