Calculating and predicting genotypic and phenotypic ratios for unlinked autosomal dihybrid crosses Terminology: * Dihybrid crosses involve two genes which control two characteristics. There are complications of these patterns as illustrated in the calculations that follow. * Unlinked genes are found on different chromosomes and can be segregated by random assortment of meiosis/ metaphase II * Autosomes are those chromosomes other than the XY gender determining chromosomes (not sex linked). Mendel's Dihybrid Cross with Peas Phenotypes: Smooth Yellow Seeds X Rough Green Seeds The chromosomes are shown as homologous pairs but not as bivalents. * * Smooth is dominant to Rough Yellow is dominant to green Meiosis: * Reduces the chromosome number and randomly assorts the alleles for each gene * As the parents are homozygous they each produce only one type of gamete. Fertilization: * Random fertilization of the gametes. Offspring: * The offspring are heterozygous at each gene loci. Notice the chromosome number is restored to that of the parents. * New homologous pairs are produced The offspring are crossed = F1 x F1 (F1 self) Meiosis Meiosis: * Independent assortment of alleles * All allele combinations of gametes are shown for each parent. Fertilization: * The grid shows all offspring genotype combinations from random fertilization. Phenotypic ratio: 9 Smooth Yellow: 3 Smooth green: 3 Rough Yellow: 1 Rough Green Dihybrid Ratio: * This ratio is called the F2 Dihybrid Ratio and results from a cross between two heterozygous dihybrids * The ratio is a prediction of the offspring ratio. * Actual numbers may deviate from this ratio as each fertilization is a random process * The ratio only sets the probability of a particular offspring phenotype arising. Dihybrid Calculations Example1: Capercaille (simple dominance/ recessive) The Capercaille is a ground dwelling bird of the pine forest of Scotland. The length and color of the primary feather is controlled by two unlinked genes. Using the allele key below calculate the phenotypic ratio of an F2 beginning with a cross between a hen bird that is homozygous recessive for both genes and a cock bird that is homozygous dominant for both genes. Allele Key: * * Q- Long feather q-short feather * * A- dark feather color a-light feather color Example2: Sweet peas (codominance/ dominance) Sweet pea flowers color is controlled by a codominant pair of alleles. The flowers are white, pink and red. The height of the mature plant is controlled by a gene showing dominance. Calculate the F2 phenotypic ratio for a cross between two heterozygous plants at both gene loci. Allele key: * * A1= white, A2= red B= Tall, b= short Example3: Dihybrid Test Cross A suspect heterozygote Guinea pig for coat color and length is crossed with a double homozygote recessive. As with a monohybrid test cross there is a predictable dihybrid test cross ratio which is 1:1:1:1 Allele key: * L = long hair coat * l =short hair coat * * B =Black coat b =brown coat Example4: Dihybrid with Sex linkage at one gene loci. Colorblind allele loci is found on the non-homologous region of the X chromosome. Tongue rolling alleles are carried on an autosomal chromosome Calculate the phenotypic ratio of a cross between a male tongue roller (heterozygous) with normal vision and a female who is heterozygous at both loci. Allele Key: * XB= Normal vision * Xb= Colourblind * Y = Male chromosome * * T= Tongue roller t = non-tongue roller more dihybrid questions Example5: Epistasis/ Mouse color: Here two genes interact to control one characteristic. Mouse coat color is controlled by two genes. The first produces the pigment and the second controls the banding of the coat color pigment. Mouse coat is either Black (not banded), Agouti(banded) or albino(no color or banding). Agouti is actually a black hair that has a yellow tip and represents the color of wild mice. Calculate the phenotypic ration from a cross between two agouti mice who are heterozygous at both gene loci. Example6 Epistasis/ Siamese cats: here again two gene interact to control the coat Allele key: * C= Color produced * c = no color produced * * A = Banding (agouti/back yellow tip) a =Non banding (black) Statistical tests for genetic crosses (Chi Square) Sometimes the data from an experiment are not measurements but counts (or frequencies) of things, such as counts of different phenotypes in a genetics cross. * With frequency data you can’t usually calculate averages or do a t test, but instead you do a chi-squared test. * This compares observed counts with some expected counts and tells you the probability (P) that there is no difference between them. * In Excel the test is performed using the formula: =CHITEST (observed range, expected range) . * There are three different uses of the test depending on how the expected data are calculated. Chart link will show you why we choose the test below. Sometimes the expected data can be calculated from a quantitative theory, in which case you are testing whether you observed data agree with the theory. * If P < 5% then the data do not agree with the theory. * If P > 5% then the data do agree with the theory. A good example is a genetic cross, where Mendel’s laws can be used to predict frequencies of different phenotypes. In this example * Excel formula are used to calculate the expected values using a 3:1 ratio of the total number of observations. * The Chi square P is 53%, which is much greater than 5%, so the results do indeed support Mendel’s law. Chi square calculation on dihybrid data In one of Mendel's dihybrid crosses, the following types and numbers of pea plants were recorded in the F2 generation: * Yellow round seeds (289) Yellow wrinkled seeds (122) Green round seeds (96) Green wrinkled seeds (36) * According to theory these should be in the ratio of 9:3:3:1. Do these observed results agree with the expected ratio?