The MOLECULES of LIFE Physical and Chemical Principles Selected Solutions for Students Prepared by James Fraser and Samuel Leachman Chapter 9 Free Energy Problems True/False and Multiple Choice 2. The work done by biological systems is most commonly which type of work? a. b. c. d. e. 4. 6. pressure chemical home volume heat The value of ∆f Go for elemental oxygen is: a. –15 kJ•mol–1. b. 0 kJ•mol–1. c. Much larger than the free energy of elemental hydrogen and much less than the free energy of elemental uranium. d. Equal to the free energy of elemental tungsten. e. Both b and d. At equilibrium: a. There is no change in temperature over time. b. The free energy of the system is minimized. c. The combined entropy of the system and surroundings is maximized. d. Only b and c. e. a, b, and c. Fill in the Blank 8. The standard state has a pressure of ___________. Answer: 1 atm 10. In biochemistry, the standard state for water is ____ M. Excepting H+, for all other solutions, the standard state is ______ M. Answer: 55, 1 Quantitative/Essay Problems 12. Consider the distribution of molecules in energy levels in the diagram below, where each “X” represents one molecule. A molecule in energy level 1 contributes one unit of energy to the total internal energy, a molecule in energy level 2 contributes two units of energy to the total internal energy, etc. The system is at 273 K. Energy level 4 X Energy level 3 XX Energy level 2 XXXXX X Energy level 1 XXXXX XXXXX XXXXX What are the values of the (a) internal energy (U), (b) entropy (S), and (c) Helmholtz free energy (A) of the system? Assume that kB = 1 energy unit•K–1. Answer: a. Utotal = ΣNiUi = 1 × 4 + 2 × 3 + 6 × 2 + 15 × 1 = 4 + 6 + 12 + 15 = 37 units b. W = (Total)!/(Energy level 4)! × (Energy level 3)! ... = 24!/(1!2!6!15!) = 329,491,008 S = kB ln W = 19.6 units•K–1 c. A = U – TS = 37 units – 273 K × 19.6 units•K–1 = –5317 units 14. Assume that entropy and enthalpy changes are independent of temperature. A system in state A has an enthalpy of –22 kJ and an entropy of 7 J•K–1. In state B, it has an enthalpy of –12 kJ and an entropy of 15 J•K–1. At what temperatures will state B be favored? Answer: The state B will be favored when GB < GA Therefore: HB – TSB < HA – TSA (HB – HA)/(SB – SA) < T (because SB – SA > 0) (– 12,000 J + 22,000 J)/(15 J•K–1 – 7 J•K–1) = 1250 K 1250 K < T. The temperature must be greater than 1250 K. The Molecules of Life by John Kuriyan, Boyana Konforti, and David Wemmer © Garland Science 2 Chapter 9: Free Energy 16. What is the expression for the equilibrium constant for the reaction A B + C? Answer: [B][C]/[A] 18. Consider the following reactions in which A, B, C, and D are elements in their most stable states: A+B→Y C+D→Z Y+Z→J ∆Go Using the following table of values, what is the value of ∆f Go for the formation for J? Reaction ∆Go (kJ•mol–1) A+B→Y –70 C+D→Z 23 Y+Z→J 15 Answer: ∆f G(Y) – (∆f G(A) + ∆f G(B)) = –70 kJ•mol–1 → ∆f G(Y) = –70 kJ•mol–1 ∆f G(Z) – (∆f G(C) + ∆f G(D)) = 23 kJ•mol–1 → ∆f G(Z) = 23 kJ•mol–1 ∆f G(J) – (∆f G(Y) + ∆f G(Z)) = 15 kJ•mol–1 ∆f G(J) = 15 kJ•mol–1 – 70 kJ•mol–1 + 23 kJ•mol–1 = –32 kJ•mol–1 20. Consider the same reaction as in Problem 19. Assume that enthalpy and entropy do not vary with temperature. At what temperature will the reaction begin to proceed spontaneously in the opposite direction (that is, at what temperature will ∆Goreactants < ∆Goproducts)? 22. A chemist wants to develop a fuel by converting water back to elemental hydrogen and oxygen using coupled ATP hydrolysis to drive the reaction. Given that the value of ∆ f Go for water is –237 kJ•mol–1 and that one mole of ATP hydrolyzed to ADP yields –30 kJ•mol–1, how much ATP is needed to yield three moles of H2 gas? Answer: Reaction 1: 2H2+O2 → 2H2O The ATP reaction: 2H2O + X ATP → 2H2 + O2 + ADP + phosphate The molar ratio of water to hydrogen gas is 1:1, therefore 3 moles of H2O will need to be converted. ∆Greaction1 = –711 kJ must be balanced by ATP hydrolysis. ∆Greaction1 > ∆GreactionATP –711 kJ > –30 kJ × (moles of ATP) –711 kJ/–30 kJ < moles of ATP 23.7 < moles of ATP Therefore at least 23.7 moles of ATP must be hydrolyzed to yield 3 moles of hydrogen gas. This also demonstrates how ATP hydrolysis can be used to drive an otherwise unfavorable process. 24. Explain why the absolute value of the work done by a process at constant pressure can never be greater than the absolute value of the Gibbs free-energy change for the process. Answer: The maximum amount of work that can be performed by a process at constant temperature and pressure is the Gibbs free energy. It incorporates the minimum energy that must necessarily be lost as heat. When the temperature isn’t held constant, additional energy is lost as heat, which cannot be used as work. Answer: At 298 K, the reaction proceeds to products in Problem 19. To proceed towards reactants: ∆Greactants < ∆Gproducts 0 < ∆Gproducts – ∆Greactants 0 < ∆f Hproducts – T∆f Sproducts – (∆f Hreactants – T∆f Sreactants) 0 < –300,000 J – T × 60 J•K–1 + 240 J•K–1 × T + 30,000 J + 200 J•K–1 × T 0 < –270,000 J + 380 J•K–1 × T 710.5 K < T Therefore the temperature must be at least 710.5 K. The Molecules of Life by John Kuriyan, Boyana Konforti, and David Wemmer © Garland Science