2_07 AP Free Response 1) a. b) Temperature and pH affects an enzyme nearly the same way, though for different reasons. First, the structure of an enzyme is very complex. The basic structure of a protein is amino acids, tied together by peptide bonds, which is formed by dehydration. The structure of the protein is important, because bonds form within to create complex shapes that determines its function, because a protein is like a three-dimensional lock. If temperature was gradually increased, enzyme activity will increase too, because increase in temperature means the thermal heat and that the substrates are bouncing around faster and hitting the enzyme more often, thus increasing the reaction rate of the enzyme. But the enzyme activity increases until the temperature hits the optimal temperature. At the optimal temperature, the enzyme denatures because the increase in thermal energy has disrupted the bonds between the amino acids and destroying the shape of the protein, which is essential to its function. If temperature is lowered from the optimal level, though, the protein will regain its original shape. If pH is increased, enzyme activity will also increase to an optimal pH level. Enzyme activity increases because the gradual decrease of H+ ions leaves the substrates little interference/attraction to the positive ion as it makes its way to the enzyme. But past the optimal pH level, there will be too many OH- ions in the surroundings which will bond with the H+ ions in the protein and change the structure, and thereby denaturing the protein. A controlled experiment that can be used is by taking an two separate groups of enzyme, and adding the substrate. The first group of enzymes will be the controlled group, with no increase in temperature or pH. The second group will be the experimental group and it will gradually have an increase in pH level or temperature, whichever is being tested. Both will be measured after an increase in temperature or pH. The hypothesis being tested is that when the temperature/pH level are increased, then the rate of the enzyme activity will increase until it reaches an optimal point, and then it will decline because the enzyme is being denatured. Since both temperature and pH increase enzyme activity when they increase until they hit an optimal temperature of pH level, then the same experiment can be used for both.