CHAPTER 9 - GENETICS Gregor Mendel – father of modern genetics, discovered via crossbreeding pea plants. Haploid – NOTE: ‘loid, ploidy’ means the number of homologous sex chromosomes in a biological cell. In humans, most cells are Diploid because of one set of chromosomes from each parent. SEX cells are haploid, because they only have half of a full set. Diploid – see above Gamete – a cell that fuzes with another during fertilization in any organism that reproduces sexually Heretozygous - describes an individual that has 2 different alleles for a trait. In diploid organisms, the two different alleles were inherited from the organism's two parents. For example a heterozygous individual would have the allele combination Pp. Homozygous – basically same as above, but think homo as two of the same, so a homozygous person would have PP True-breeding – an organism that has a trait, e.g. red hair. When paired with another truebreeding organism, they will ONLY produce offspring with the same trait Homologous chromosomes - chromosomes in a biological cell that pair (synapse) during meiosis, or alternatively, non-identical chromosomes that contain information for the same biological features and contain the same genes at the same loci but possibly different genetic information, called alleles, at those genes. For example, two chromosomes may have genes encoding eye color, but one may code for brown eyes, the other for blue. Autosome – a non sex chromosome. E.g. NOT X/XY/etc. so male/female chromosomes would be the same Sex-chromosome – XX/XY/etc Meiosis - the process by which one diploid eukaryotic cell divides to generate four haploid cells often called gametes Crossing over - the process by which two chromosomes, paired up during prophase 1 of meiosis, exchange some portion of their DNA Allele - a viable DNA (deoxyribonucleic acid) coding that occupies a given locus (position) on a chromosome. Usually alleles are sequences that code for a gene, but sometimes the term is used to refer to a non-gene sequence. An individual's genotype for that gene is the set of alleles it happens to possess. In a diploid organism, one that has two copies of each chromosome, two alleles make up the individual's genotype. Loci (locus) – position of a gene on a chromosome Parental – initial pairing of parents in a genetic tree Filial 1 (f1), and F2 – 1st,2nd generation after parents Dominant trait – think of Pp, P will override p Recessive – will be subservient to P, but when combined pp, it will show Genotype – a person’s genetic makeup Phenotype – a person’s outward showing of genetic traits Monohybrid - A Monohybrid cross is a cross between individuals who are identically heterozygous at one locus, for example, Bb x Bb, so for example the will have 4 kids in the punett square, and 1 will be recessive with bb Dihybrid - A dihybrid cross is a cross between two individuals identically heterozygous at two loci for example: RrYy/RrYy. A dihybrid cross is often used to test for dominant and recessive genes in two separate characteristics. Incomplete dominance - a heterozygous genotype that creates an intermediate phenotype. In this case, only one allele (usually the wild type) at the single locus is expressed, and the expression is doseage dependent. Two copies of the gene produce full expression, while one copy of the gene produces partial expression in an intermediate phenotype. Co-dominance - In codominance, neither phenotype is completely dominant. Instead, the heterozygous individual expresses both phenotypes. A common example is the ABO blood group system. The gene for blood types has three alleles: A, B, and i. i causes O type and is recessive to both A and B. The A and B alleles are codominant with each other. When a person has both an A and a B allele, the person has type AB blood. Pleiotropism - Pleiotropy occurs when a single gene influences multiple phenotypic traits, example sickle cell anemia Polygenicity – Epistasis – think of the puppy’s coat color, the influence of one allele on the expression of the other Linkage - The amount of crossing over that occurs is directly proportional to the distance between the alleles. CHAPTER 10 – DNA/STUPID SHIT Chromatin - the complex of DNA and protein that makes up chromosomes Nucleosome - the fundamental repeating units of all eukaryotic chromatin (except when packaged in sperm). They package DNA into chromosomes inside the cell nucleus and control gene expression. They are made up of DNA and four pairs of proteins called histones, and resemble "beads on a string of DNA" Histone protein - the chief protein components of chromatin. They act as spools around which DNA winds, and they play a role in gene regulation Purines - organic compound, Purines make up one of the two groups of nitrogenous bases. Pyrimidines make up the other group. These bases make up a crucial part of both deoxyribonucleotides and ribonucleotides, and the basis for the universal genetic code. Pyrimidines – see above Adenine - a purine with a variety of roles in biochemistry including cellular respiration, in the form of both the energy-rich adenosine triphosphate (ATP) and the cofactors nicotinamide adenine dinucleotide (NAD) and flavin adenine dinucleotide (FAD), and protein synthesis, as a chemical component of DNA and RNA. Basically a lot of shit. Guanine - one of the five main nucleobases found in the nucleic acids DNA and RNA; the others being adenine, cytosine, thymine, and uracil Thymine – see above Cytosine – see above Uracil – see above DNA - Deoxyribonucleic acid (DNA) is a nucleic acid that contains the genetic instructions used in the development and functioning of all known living organisms. Think of blueprints. RNA - a nucleic acid, consisting of many nucleotides that form a polymer. Each nucleotide consists of a nitrogenous base, a ribose sugar, and a phosphate. RNA plays several important roles in the processes of translating genetic information from deoxyribonucleic acid (DNA) into proteins. One type of RNA acts as a messenger between DNA and the protein synthesis complexes known as ribosomes, others form vital portions of the structure of ribosomes, act as essential carrier molecules for amino acids to be used in protein synthesis, or change which genes are active. RNA polymerase - an enzyme that makes an RNA copy of a DNA or RNA template. In cells, RNAP is needed for constructing RNA chains from DNA genes, a process called transcription DNA polymerase - an enzyme that assists in DNA replication. Such enzymes catalyze the polymerization of deoxyribonucleotides alongside a DNA strand, which they "read" and use as a template. The newly-polymerized molecule is complementary to the template strand and identical to the template's partner strand Nucleic acids - a macromolecule composed of nucleotide chains. In biochemistry these molecules carry genetic information or form structures within cells. The most common nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). Nucleic acids are universal in living things, as they are found in all cells. They are also found in viruses. Long story short, DNA and RNA. Amino acids - a molecule that contains both amine and carboxyl functional groups Proteins - large organic compounds made of amino acids arranged in a linear chain and joined together by peptide bonds between the carboxyl and amino groups of adjacent amino acid residues. The sequence of amino acids in a protein is defined by a gene and encoded in the genetic code Radioisotopes – Bacteriophage - any one of a number of viruses that infect bacteria Transcription - the process by which genetic information from DNA is transferred into RNA Translation - Translation occurs in the cytoplasm where the ribosomes are located. Ribosomes are made of a small and large subunit which surrounds the mRNA. In translation, messenger RNA (mRNA) is decoded to produce a specific polypeptide according to the rules specified by the genetic code. This uses an mRNA sequence as a template to guide the synthesis of a chain of amino acids that form a protein. Intron - non-coding sections of DNA Exon - any region of DNA within a gene that is transcribed to the final messenger RNA (mRNA) molecule, rather than being spliced out from the transcribed RNA molecule Splicing - a modification of genetic information after transcription, in which introns of precursor messenger RNA (pre-mRNA) are removed and exons of it are joined Wobble hypothesis – 5’ cap – 3’ poly-A Codon - genetic code is the set of rules by which information encoded in genetic material (DNA or RNA sequences) is translated into proteins (amino acid sequences) by living cells AUG – mRNA - a molecule of RNA encoding a chemical "blueprint" for a protein product tRNA - a small RNA chain (73-93 nucleotides) that transfers a specific amino acid to a growing polypeptide chain at the ribosomal site of protein synthesis during translation rRNA - type of RNA synthesized in the nucleolus by RNA polymerase I, is the central component of the ribosome ribosome - complexes of RNA and protein that are found in all cells. The function of ribosomes is the assembly of proteins, in a process called translation. Ribosomes do this by catalysing the assembly of individual amino acids into polypeptide chains by reading messenger RNAs and binding amino acids that are attached to transfer RNA molecules. large subunit – small subunit – DNA mutation – Point mutation – Frameshift mutation – CHAPTER 11: more gay stuff Differentiation - a concept from developmental biology describing the process by which cells acquire a "type" Gene regulation - refers to the cellular control of the amount and timing of changes to the appearance of the functional product of a gene. Although a functional gene product may be an RNA or a protein, the majority of the known mechanisms regulate the expression of protein coding genes. Any step of the gene's expression may be modulated, from DNARNA transcription to the post-translational modification of a protein Operator - a segment of DNA which regulates the activity of the structural genes of the operon that it is linked to, by interacting with a specific repressor or activator Enhancer - a short region of DNA that can bind proteins called an activator (genetics), binding of activators to this enhancer region can initiate the transcription of a gene that may be some distance away from the enhancer, or can even be on a different chromosome Promoter - a regulatory region of DNA located upstream (towards the 5' region) of a gene, providing a control point for regulated gene transcription. RNA polymerase - an enzyme that makes an RNA copy of a DNA or RNA template Lac repressor - a DNA-binding protein which inhibits the expression of genes coding for proteins involved in the metabolism of lactose in bacteria Lactose - a disaccharide Chemical inactivation – Nucleosomes – see chapter 9 Chromatin – see 9 Transcription factors - a protein that binds to specific parts of DNA using DNA binding domains and is part of the system that controls the transfer (or transcription) of genetic information from DNA to RNA Stem cells – cells that have the ability to change into other types of cells CHAPTER 13: Evolution - Gay Cat 5 Charles Darwin – duh, founder of modern evolutionary theory SLIDES REVIEW AREGGHHHHHE$@^%{T