Biol 121: Introduction to Cell and Molecular Biology Fall 2007 Welcome to Biology 121! Introduction to Cell and Molecular Biology is designed to create a foundation for study in the life sciences by introducing students to the biology of the cell, classical genetics and molecular genetics. The goal for this course is not only for you to become familiar with life at the cellular level, but the means by which it is investigated as well. Some outcomes of this familiarity will be an understanding of the: cell theory and the differences between prokaryotic and eukaryotic cells. structure and function of the major organelles of eukaryotic cells. structure and function of cell membranes. basic structure and function of the four major types of biological molecules importance of energy transformations and the role of enzymes in metabolic pathways. processes of cellular respiration and photosynthesis cell cycle, mitosis and meiosis. principles of Mendelian inheritance. molecular basis of inheritance including DNA replication, transcription and translation. control of gene expression in prokaryotes and eukaryotes. In lab you will gain hands on experience with a diversity of biological systems: from DNA and enzymes to spinach chloroplasts and jewel wasps. While investigating these systems you will become familiar not only with a variety of technical skills such as microscopy, spectrophotometry, and polymerase chain reaction, but you’ll also gain an understanding of how scientists communicate with each other using descriptive statistics, graphs and tables, scientific figures and scientific papers. Course Structure: Your success as a student in this course will require regular attendance, careful note taking and mastery of the textbook material through careful study. You will meet for a 70-minute lecture period every other day. Since the labs are smaller than the lectures, you will probably attend another lab section than most of the people in your lecture. Labs are taught by professors and student Teaching Assistants, and meet once every cycle (including cycles 1 and 12). Lab attendance in your lab section is mandatory. The time scheduled for each lab is 2 hours and 50 minutes, but occasionally you may need to stay longer to complete assigned work, or come in outside of the regularly scheduled time to check on the progress of an experiment. Text: The required text for this course is Biology by Brooker. R.J., E.P. Widmaier, L.E. Graham and P.D. Stiling (2008, McGraw-Hill, Dubuque, IA). It is available in either a single hardcover or three separate paperback volumes. We recommend purchasing the full-text unless you only plan to take the course for a single semester, as for pre-nursing students or students who are fulfilling a non-majors science core requirement. You should have received an e-mail regarding this prior to the start of school. Lab manual and lab notebook: The faculty and staff of this department have written the lab manual used in this course. It will be handed out at the laboratory orientation session that you are scheduled to attend. However, you also need to purchase a carbonless Student Lab Notebook for Life Science, available at the SJU Bookstore. Evaluation: Your grade in this course will be determined based on your performance on exams, quizzes, homework and laboratory work. The point breakdown is a follows: Exam 1 Exam 2 Exam 3 Final Exam Assignments, quizzes, seminars, etc. Lab 15 - 17% 15 - 17% 15 - 17% 20 - 24% 0 - 10% 25% The instructor for your lecture section will announce exact percentages for exams and assignments at the beginning of the semester. The format of the exams will vary according to section. You can expect multiple-choice, short answer, matching, fill in the blank, label the diagram and essay-type questions. The lecture exams will cover the chapters indicated on the course syllabus. The final will be approximately 20% comprehensive and 80% new material. Your instructor may also assign homework, give quizzes or request your attendance at seminars for a portion of your grade. Your instructor may schedule a review session prior to the exam. If that is the case, don’t miss it. It is a valuable opportunity to ask your questions and go over some of the more difficult points in the text or lecture. Grading: Letter grades will be assigned as follows: Biol 121 is offered for standard, A-F, grading only. There is no S/U option available. A AB B BC 90-100% 87-89% 82-86% 79-81% C CD D F 72-78% 69-71% 60-68% <60% Academic Integrity: The teaching of Biology 121 and other courses in the Biology Department depend on the highest standards of academic conduct. Cheating, plagiarism and other dishonest acts will not be tolerated and may result in your expulsion from the course. Violations of academic integrity will be dealt with according to the procedures outlined on pages 24-25 of the 2005-2007 Academic Catalog. Course Instructors: Biology 121 has14 lecture sections and 24 laboratory sections. If questions or problems arise do not hesitate to contact your instructor or the course coordinator. We are always willing to talk with you and, if possible, assist you with your concern. We wish you a successful and exciting semester! Ms. Carol Jansky NSC 218: 363-3178 Lab Coordinator; Lab Dr. Bill Lamberts PENGL 353; 363-3160 Course Coordinator; Lecture Dr. Phil Chu PENGL 307; 363-3561 Lecture & lab Dr. Charles Rodell PENGL 357; 363-3174 Lecture Dr. Ellen Jensen NSC 206: 363-3092 Lecture and Lab Dr. Stephen Saupe PENGL 335; 363-2782 Lecture and lab Dr. Cheryl Knox NSC 254: 363-3224 Lecture and lab Dr. Shawn Thomas PENGL 303; 363-3275 Lecture and lab Dr. Jeanne Marie Lust NSC 208; 363-2777 Lecture and lab Ms. Kristina Timmerman PENGL 301; 363-xxxx Lecture & lab Dr. Barbara May NSC 204; 363-3173 Lecture Dr. Marcus Webster PENGL 313; 363-3176 Lab Dr. Michael Reagan NSC 216; 363-3110 Lecture Syllabus Cycle I Class 1 2 Date Topic Aug 29/30 Introduction – evolution, hierarchy Aug 31/ Sept 1 Intro – Proteomes & genomes, 3 4 5 Sept 4/5 Sept 6/7 Sept 10/11 III 6 7 Sept 12/13 Sept 14/17 IV 8 9 10 11 Sept 18/19 Sept 20/21 Sept 24/25 Sept 26 Sept 27/28 12 Oct 1/ 2 science Atoms, bonding and molecules Water & pH Properties of carbon, isomers, functional groups Survey of macromolecules Cells – pro vs. eukaryotes, organelles, cytosol, cytoskeleton Cells – nucleus, etc. Exam 1 (8 classes; chapters 1 – 4) Membranes – structure Common Day Osmosis & transport across membranes Cell systems 13 14 15 Oct 3 / 4 Oct 5/8 Oct 9/10 Energetics & metabolism Enzymes Respiration – glycolysis 16 Oct 11/12 Oct 15/16 17 18 19 20 Oct 17/18 Oct 19/22 Oct 23/24 Oct 25/26 21 Oct 29/30 Free Day Respiration – Citric acid cycle & oxidative phosphorylation Photosynthesis – Light dependent Photosynthesis – Calvin cycle Exam 2 (9 classes; chapters 5 – 8) Multicellularity – ECM, cell junctions, tissues Mitosis & cell cycle VIII 22 23 24 Oct 31/Nov1 Nov 2/5 Nov 6/7 IX 25 26 27 Nov 8/9 Nov 12/13 Nov 14/15 X 28 29 Nov 16/19 Nov 20/26 Nov 21-25 Nov 27/28 Nov 29/30 Dec 3/4 II V VI VII XI 30 31 32 Meiosis Simple patterns of inheritance More simple inheritance Complex patterns of inheritance More complex patterns Exam 3 (7 classes; chapter 10 & 15-17) DNA structure Replication Thanksgiving Break Gene expression & transcription Translation Gene regulation Chap 1 1 2 2 3 3 4 Lab Lab Orientation Observation of Freshwater microorganisms Organelles in Eukaryotic Cells 4 5 5 6 7 7 7 7 Investigating the effect of starvation on food vacuole formation in Tetrahymena pyriformis Osmosis and Diffusion in Decalcified Chicken Eggs Enzyme Activity-Testing Catalase Activity 8 8 Spectroscopy 10 9.4, 15 15 16 16 17 17 11 11 12 12 13 Investigating Factors Affecting the Rate of Photosystem II (PSII) Lab 9: Mendelian Genetics Mitosis & meiosis Amplification of Mitochondrial DNA XII 33 Dec 5/6 Mutation, DNA repair, cancer 14 34 35 Dec 7/10 Dec 11/12 18 20, 21 36 Dec 13/14 Bacterial & viral genetics Genetic technology, genomes, proteomes, bioinformatics Catch-up Day Dec 18 (Tues) Exam 4 (Final Exam); 8 – 10:00 AM by the Polymerase Chain Reaction (PCR) Genetics of Nasonia vitripennis Eye Color and Electrophoresis of PCR Products