Chimp & Human Breeding

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Did chimp and human ancestors interbreed?
DNA analysis indicates that species split was a messy affair, scientists say
By Bjorn Carey
LiveScience
Updated: 5:46 p.m. ET May 17, 2006
The earliest known ancestors of modern humans might have reproduced with early
chimpanzees to create a hybrid species, a new genetic analysis suggests.
Based on the study of human and chimp genomes, the scientists believe the split
between the human and chimpanzee lines occurred much more recently than
previously thought — no more than 6.3 million years ago and perhaps as recently as
5.4 million years ago.
Human and chimpanzee ancestors began branching apart on the primate
evolutionary tree about 9 million years ago, scientists say, but there are significant
gaps in the fossil record. The new analysis suggests that a full split, which scientists
call speciation, wasn't achieved for nearly 4 million years and might have occurred
twice.
The study was released by the journal Nature on Wednesday and will appear in a
future print issue.
Researchers from Harvard Medical School and the Broad Institute of MIT
and Harvard matched sequences of the human genome to the same regions
of the genetic code of chimpanzees and several other primate species. DNA
is made up of sequences of chemical bases, labeled A, T, G, and C. They
compared the codes, letter by letter, and noted where there was a
divergence.
Based on an estimated relative mutation rate, they calculated how long it
would take to accrue the mutations and determined that millions of years of
genetic divergence led to an initial speciation around 6.3 million years ago.
From start to finish, complete speciation spanned a much longer time range
than in any other modern apes.
"The variation is huge," said study lead author Nick Patterson of the Broad
Institute. "There are regions of the genome that don't appear to be much
more than 5 million years old, and there are regions that appear to be 4
million years older than that. The ancestral time over which humans and
chimpanzees speciated, where there's no more gene flow, covers 4 million
years."
X marks the spot
The team also observed that humans and chimps are very similar on the X
chromosome — sometimes referred to as the female sex chromosome, even
though both sexes have at least one X chromosome. The average age of the X
chromosome in humans is about 1.2 million years "younger" than the rest of the
chromosomes, and the final change occurred around 5.4 million years ago.
This suggests that after the first speciation 6.3 million years ago, early human
ancestors may have lived and reproduced with ancestral chimps to produce hybrid
primates.
"This would help explain why divergence on X between humans and chimps is so
low," Patterson told LiveScience.
Mixing and matching genetic information from two species doesn't always work out
well, and hybrid species often have trouble reproducing. The problem generally
arises from differences on the X chromosomes.
"In a situation where it's unfavorable to have one X from one species and one from
the other, which happens as hybrids reproduce among themselves, you get powerful
selection for the good combination," Patterson said. "The X chromosome will fix out
and everyone will have the same X."
What happened
Patterson explains one possibility for how this could have happened: The initial split
occurred around 6.3 million years ago. Sometime after, the descendants of the
earliest known human ancestor mated with ancestral chimps and created a hybrid
species.
In this scenario, the earliest known human ancestor, a biped known as "Toumai" that
probably didn't look much different than chimpanzee ancestors, would have predated
the hybridization. The Toumai fossil, which was unearthed in Chad, has been dated
back to somewhere between 6.5 million and 7.5 million years ago.
Scientists can't say how long the hybridization carried on, but the final speciation
occurred around 5.3 million years ago, possibly because the two species' genetic
codes were too different to mix, or because the animals were simply physically
unappealing to each other.
"If that occurred, they might have been compatible enough on X that it would fix out
to one species or another," Patterson said. "As it happened, it fixed to chimps, but it
could have gone the other way."
This is just one possible explanation for the gap in speciation time, Patterson said,
and is not meant to be interpreted as the full answer. Researchers at the Broad
Institute are currently working on sequencing gorilla and other primate genomes and
searching for similar patterns of evolution to help better tell the whole story.
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