pI = (pk1 + pk2)/2, the pH where the molecule has a net charge of 0 green fluorescent protein (GFP) blue O O2 Phe-Ser-Tyr-Gly-Val-Gln 69 64 N HO H O N N Phe green O Gln Val H Ninhydrin Test Ion Exchange Chromatography size exclusion chromatography Protein separation ultrafiltration ultracentrifugation least soluble at their IP Step 1. Separation of Polypeptide Chains dissociated by exposure to pH extremes, 8 M urea, 6 M guanidinium hydrochloride, or high salt cencentrations Cleavage of disulfide bridges Edman degradation phenylisothiocyanate 50 cycles of reaction can be accomplished on 50 pmol (about 0.1 mg ) Carboxypeptidases cleave amino acid residues from the C-termini Cyanogen bromide Fmoc solid phase peptide synthesis: A Practical Approach Edited by Weng C. Chan and Peter D. White OXFORD UNIVERSITYPRESS 2000