B I O M E D I C A L O N T O L O G Y DICOM and Image Ontology Image Ontology Workshop 2006 Stanford University Anand Kumar MD, PhD, MBA IFOMIS, Univ. of Saarland, Germany. Siemens Medical Solutions, Germany. B I O M E D I C A L DICOM Digital Imaging and Communications in Medicine Joint standard from American College of Radiology and National Electronic Manufacturer’s Association A standard method for transferring images and associated Information between devices manufactured by vendors O N T O L O G Y Addresses the needs particularly of Radiologists B I O M E D I C A L Basic definitions Information Object (Class): An abstraction of a real information entity (e.g., CT Image, Structured Report, etc.) which is acted upon by one or more DICOM Commands Synonym of Information Object Definition (IOD) O N T O L O G Y Service Class: A structured description of a service which is supported by cooperating DICOM Applications using specific DICOM Commands acting on a specific class of Information Object. B I O M E D I C A L O N T O L O G Y Information Object Classes Normalized Information Object Class: Includes only those Attributes inherent in the real-world entity represented. Composite Information Object Class: May additionally include Attributes which are related to but not inherent in the real-world entity. E.g. Patient Name together with Computed Tomography Image Information Object Class Expresses the communication requirements of images where image data and related data needs to be closely associated. B I O M E D I C A L O N T O L O G Y Entity and Relationship B I O M E D I C A L O N T O L O G Y DICOM Relations and Attributes (Extra) General Study Module Has-study-date Has-study-time Has-referring-physician Has-accession-number Has-physicians-of-record Has-physicians-reading-study Has-reference-study Has-procedure-code B I O M E D I C A L O N T O L O G Y DICOM Relations and Attributes (Extra) General Series Module Has-modality Has-laterality Has-series-date Has-series-time Has-performing-physician Has-protocol Has-operator Has-reference-performed-step Has-related-series Has-body-part-examined Has-patient-position Has-smallest-pixel-value-in-series Has-Largest-pixel-value-in-series Has-Imaging-Service-Request Has-performed-procedure-step Has-performed-procedure-step-start-time Has-performed-procedure-step-start-date Has-performed-protocol-code B I O M E D I C A L O N T O L O G Y DICOM Relations and Attributes (Extra) General Image Module Has-patient-orientation Has-content-date Has-content-time Has-image-type Has-Acquisition-date Has-Acquisition-time Has-referenced-image-sequence Has-derivation Has-source-image Has-referenced-waveform Has-images-in-acquisition (could be put in the acquisition process module) Has-quality-control-image Has-burned-in-annotation Has-lossy-image-compression Has-lossy-image-compression-ratio B I O M E D I C A L O N T O L O G Y DICOM Relations and Attributes (Extra) Image Pixel Module Has-samples-per-pixel Has-photometric-interpretation Has-rows Has-columns Has-bits-allocated Has-bits-stored Has-high-bit Has-pixel-representation Has-pixel-data Has-planar-configuration Has-pixel-aspect-ratio Has-smallest-image-pixel-value Has-largest-image-pixel-value Has-red-palette-color-lookup-table-descriptor Has-blue-palette-color-lookup-table-descriptor Has-green-palette-color-lookup-table-descriptor Has-red-palette-color-lookup-table-data Has-blue-palette-color-lookup-table-data Has-green-palette-color-lookup-table-data B I O M E D I C A L O N T O L O G Y Multiframe Images Mutiframe Images: Large number of images can be sent as one object All attributes equal to all images or their groups sent once Modality independent functional groups Modality dependent functional groups B I O M E D I C A L O N T O L O G Y What should Image Ontology Cover? Image Series Study Patient Visit Secondary Capture Image Based Reporting Image Based Diagnosis Radiotherapy Clinical Trials B I O M E D I C A L O N T O L O G Y DICOM Structured Reporting Template Specifications which include: Concept Name, Requirement, Value Type, Value Multiplicity, Value Set Restriction, Relationship Types B I O M E D I C A L O N T O L O G Y B I O M E D I C A L O N T O L O G Y Examples Reporting DICOM Image-Related Object B I O M E D I C A L O N T O L O G Y Advice Cover the depth to the extent DICOM does Use DICOM types Reclassify them Provide correct relations FMA is a reference ontology too FMA is not small B I O M E D I C A L O N T O L O G Y DICOM and Image Ontology Image Ontology Workshop 2006 Stanford University Anand Kumar MD, PhD, MBA IFOMIS, Univ. of Saarland, Germany. Siemens Medical Solutions, Germany.