4.3 DID YOU KNOW ? Confusing Mosquitoes Mosquitoes can be dangerous when they transmit diseases such as malaria and West Nile fever. Research has shown that molecules with a spherical shape are better in mosquito repellents than long, thin molecules. It seems spherical molecules are better able to block the sensory nerves in the mosquito’s antennae. This makes it difficult for mosquitoes to detect carbon dioxide, moisture, and heat from humans or animals. VSEPR Theory The shape of molecules has long been investigated through crystallography, using microscopes and polarimeters in the late 1800s and X-ray and other spectrographic techniques since the early 1900s. One of the most important applications of molecular shape research is the study of enzymes. Enzymes are large proteins that are highly specific in what they will react with. There are about three thousand enzymes in an average living cell and each one carries out (catalyzes) a specific reaction. There is no room for error without affecting the normal functioning of the cell; different molecular shapes help to ensure that all processes occur properly. Despite extensive knowledge of existing enzymes, the structure of these proteins is so complex that it is still effectively impossible to predict the shape an enzyme will take, even though the sequence of its constituent amino acids is known. The study of molecular shapes, particularly of complex biological molecules, is still a dynamic field. The Arrival of VSEPR The valence bond theory created and popularized by Linus Pauling in the late 1930s successfully explained many of the atomic orientations in molecules and ions, including tetrahedral, trigonal planar, and linear orientations. Pauling’s main empirical work was with the X-ray analysis of crystals. The valence bond theory of bonding, for which he is primarily responsible, was created to explain what he “saw” in the laboratory. Pauling extended the work of his friend and colleague, Gilbert Lewis, who is famous for creating electron dot structures. When you studied the valence bond theory, including hybrid orbitals and sigma and pi bonds, in Section 4.2, you became aware of the complexity of that approach. However, it was not until 1957 that Australian Ronald Nyholm and Englishman Ron Gillespie (Figure 1) created a much simpler theory for describing, explaining, and predicting the stereochemistry of chemical elements and compounds. The theory that they created is more effective for predicting the shape of molecules. TRY THIS activity Electrostatic Repulsion Model The electrostatic repulsion of electron pairs around a central atom in a molecule can be modelled using balloons. Materials: safety glasses, 9 balloons, string • Blow up the balloons and tie them off. • Tie two balloons very close together and place them on a table. (a) What is the orientation (e.g., angle) of two balloons? • Repeat with three and then four balloons. (b) What is the orientation of three balloons? (c) What is the orientation of four balloons? Figure 1 Dr. Ronald Gillespie co-created VSEPR theory in 1957. He moved from England to McMaster University in Hamilton, Ontario, the following year. His work in molecular geometry and in chemistry education is renowned. 242 Chapter 4 • Reuse or recycle the balloons as directed. (d) What are the pros and cons for using balloons for a physical model of the repulsion of electron pairs about a central atom in a molecule? NEL Section 4.3 The name of the Nyholm-Gillespie theory is the valence-shell-electron-pair-repulsion theory, or VSEPR (pronounced “vesper”) theory. The theory is based on the electrical repulsion of bonded and unbonded electron pairs in a molecule or polyatomic ion. The number of electron pairs can be counted by adding the number of bonded atoms plus the number of lone pairs of electrons (Figure 3). Once the counting is done, we can predict the 3-D distribution about the central atom by arranging all pairs of electrons as far apart as possible. VSEPR Theory SUMMARY VSEPR Valence Shell Electron Pair Repulsion; pairs of electrons in the valence shell of an atom stay as far apart as possible to minimize the repulsion of their negative charges central atom the atom or atoms in a molecule that has or have the most bonding electrons; form the most bonds • Only the valence shell electrons of the central atom(s) are important for molecular shape. • Valence shell electrons are paired or will be paired in a molecule or polyatomic ion. lone pairs • Bonded pairs of electrons and lone pairs of electrons are treated approximately equally. H N H H • Valence shell electron pairs repel each other electrostatically. • The molecular shape is determined by the positions of the electron pairs when they are a maximum distance apart (with the lowest repulsion possible). Using the VSEPR Theory What is the shape of the hydrogen compounds of period 2: BeH2(s), BH3(g), CH4(g), NH3(g), H2O(l), and HF(g)? First, we draw Lewis structures of each of the molecules and then consider the arrangement of all pairs of electrons. The key idea is that all pairs of electrons repel each other and try to get as far from each other as possible. Lewis structure H Be H Bond pairs Lone pairs Total pairs General formula 2 0 2 AX2 Electron pair arrangement linear O H H Figure 3 Both the ammonia molecule and the water molecule have four pairs of electrons surrounding the central atom. Some of these are bonding pairs and some are lone pairs. Molecular geometry H Be H linear The Lewis structure indicates that BeH2 has two bonds and no lone pairs of electrons. The total number of pairs of electrons around the central atom (Be) is two. These electron pairs repel each other. The farthest the electrons can get away from each other is 180°—a linear orientation. Lewis structure Bond pairs Lone pairs Total pairs H H B H 3 0 3 General formula AX3 Electron pair arrangement Molecular geometry trigonal planar H B H H trigonal planar BH3 has three bonds, which means three pairs of electrons around the central atom, B. The three pairs of electrons repel one another to form a plane of bonds at 120° to each other. This arrangement or geometry is called trigonal planar. NEL Chemical Bonding 243 LEARNING TIP Tetrahedral, trigonal planar, and linear orientations of atoms are common in molecules. To represent 3-D shapes on paper, a solid lineis a bond in the plane of the page; a dashed line --- is a bond behind the plane of the page; and a wedged line is a bond out of the plane of the page (toward the viewer). X tetrahedral Lewis structure Bond pairs Lone pairs H H C H H 4 0 Total pairs 4 General formula Electron pair arrangement Molecular geometry AX4 tetrahedral H C H tetrahedral Lewis theory indicates that CH4 has four bonds or four pairs of electrons repelling each other around the central atom, C. Experimental work and mathematics both agree that a tetrahedral arrangement minimizes the repulsion. Tetrahedral bonds point toward the corners of an equilateral pyramid at an angle of 109.5° to each other. Lewis structure Bond pairs Lone pairs Total pairs General formula Electron pair arrangement H N H H 3 1 4 AX3E tetrahedral Molecular geometry N H pyramidal trigonal planar X linear KNOW H H X DID YOU H H ? Refinements of VSEPR Theory A more detailed explanation of molecular shape requires that bonding pairs repel each other less than lone pairs, and that electrons of opposite spin repel each other less than electrons with the same spin. The Lewis structure shows that NH3 has three bonding pairs (X in general formula) and one lone pair (E in general formula) of electrons. The four groups of electrons should repel each other to form a tetrahedral arrangement of the electron pairs just like methane, CH4. The molecular geometry is always based on the atoms present and therefore, if we ignore the lone pair, the shape of the ammonia molecule is like a pyramid (called pyramidal). We would expect the angle between the atoms, HNH to be 109.5°, which is the angle for an ideal pyramid. However, in ammonia, the atoms form a pyramidal arrangement with an angle of 107.3°. This small difference is believed to occur because there is slightly stronger repulsion between the lone pair of electrons and the bonding pairs than between the bonding pairs. This causes the bonding pairs to be pushed closer together. Lewis structure O H H Bond pairs Lone pairs 2 Total pairs 2 General formula Electron pair arrangement AX2E2 4 Molecular geometry O tetrahedral H H V-shaped According to the Lewis structure, the water molecule has two bonding pairs and two lone pairs of electrons. The four pairs of electrons repel each other to produce a tetrahedral orientation. The geometry of the water molecule is called V-shaped with an angle of 104.5°. Notice that this angle is again less than the ideal angle of 109.5° for a tetrahedral arrangement of electron pairs. The slightly stronger repulsion between the lone pairs of electrons and the lone pairs and the bonding pairs is thought to force the bonding electron pairs closer together. 244 Chapter 4 Lewis structure Bond pairs Lone pairs Total pairs General formula H F 1 3 4 AXE3 Electron pair arrangement Molecular geometry tetrahedral H F linear NEL Section 4.3 Based upon the Lewis theory of bonding, the hydrogen fluoride molecule has one bonding pair and three lone pairs of electrons. The four electron pairs repel to create a tetrahedral arrangement for the electrons. This has little effect on the geometry of the hydrogen fluoride molecule, which is linear at 180°—as all diatomic molecules are. Shapes of Molecules SUMMARY VSEPR theory explains and predicts the geometry of molecules by counting pairs of electrons that repel each other to minimize repulsion. The process for predicting the shape of a molecule is summarized below. Step 1 Draw the Lewis structure for the molecule, including the electron pairs around the central atom. Step 2 Count the total number of bonding pairs (bonded atoms) and lone pairs of electrons around the central atom. DID YOU KNOW ? Molecular Shape-Shifting Knowing a molecule’s shape is useful, but knowing how the shape changes during a chemical reaction is invaluable. For example, the process by which HIV latches onto its cellular host is believed to depend on a molecular shape change. A new technique of ultrafast X-ray diffraction now allows scientists to observe how a molecule changes shape as it reacts. This technique uses very short X-ray and laser pulses to determine shapes on a time scale of tens of picoseconds. Step 3 Refer to Table 1 or Appendix C3 and use the number of pairs of electrons to predict the shape of the molecule. Table 1 Using VSEPR Theory to Predict Molecular Shape General Bond formula* pairs 2 AX2 AX3 3 Lone pairs 0 Total pairs 2 0 3 Molecular shape Geometry** Shape diagram linear (linear) X A X X trigonal planar (trigonal planar) Examples CO2, CS2 BF3, BH3 A AX4 4 0 4 LEARNING X X X tetrahedral (tetrahedral) CH4, SiH4 TIP For more molecular shapes see Appendix C3. A X X X AX3E 3 1 4 trigonal pyramidal (tetrahedral) NH3, PCl3 A X X X AX2E2 AXE3 2 1 2 3 4 4 V-shaped (tetrahedral) linear (tetrahedral) A H2O, OCl2 X X A X HCl, BrF *A is the central atom; X is another atom; E is a lone pair of electrons. **The electron pair arrangement is in parenthesis. Shape of a Polyatomic Ion SAMPLE problem Use the Lewis structure and VSEPR theory to predict the shape of a sulfate ion, SO42-. O Determining the shape of a polyatomic ion is no different than determining S O O the shape of a molecule. Again, you first obtain the Lewis structure of the ion, as shown in Section 4.1. For the sulfate ion, the central sulfur atom is O surrounded by four oxygen atoms. There is a total of 32e. An acceptable 6 + 4(6) + 2 32e Lewis structure is shown. NEL Chemical Bonding 245 Notice that you have four pairs of electrons around the central sulfur atom. This corresponds to the AX4 category and therefore, the ion has a tetrahedral shape. 2– O S O O O SAMPLE problem Shapes of Molecules with Two Central Atoms Use the Lewis structure and VSEPR theory to predict the geometry of the B2F4 molecule. Provide your reasoning. If a molecule has more than one central atom, such as two F F boron atoms in this example, consider the shape around each atom first, using the same procedure as molecules with one F B B F central atom. Then combine these individual shapes to describe or draw the overall geometry of the molecule. As in previous examples, draw the Lewis structure first to determine the number of pairs of electrons. Three pairs of electrons around a boron atom means an AX3 F F general case, and hence a trigonal planar arrangement around each central boron atom. This arrangement of electrons creates B B the minimum repulsion of electron pairs. Diboron tetrafluoride is composed of molecules with trigonal F F planar shape around each central boron atom, producing an overall planar molecule as shown to the right. Practice Understanding Concepts 1. Explain how the words that the VSEPR acronym represents communicate the main ideas of this theory. 2. Use VSEPR theory to predict the geometry of a molecule of each of the following substances. Draw a diagram showing the shape of each molecule. (c) H2S(g) (e) SiBr4(l) (a) BeI2(s) (b) PF3(g) (d) BBr3(g) (f) HCl(g) 3. Use VSEPR theory to determine the shape of each of the following polyatomic ions: (a) PO43 (b) IO3 4. Cubane is a hydrocarbon with the formula, C8H8. It has a cubic shape, as its name implies, with a carbon atom at each corner of the cube. This molecule is very unstable and some researchers have been seriously injured when crystals of the compound exploded while being scooped out of a bottle. Not surprisingly, it has some uses as an explosive. (a) According to VSEPR theory, what should be the shape around each carbon atom? Why? (b) If we assume an ideal cubic shape, what would be the bond angles around the carbon? (c) Explain how your answers to (a) and (b) suggest why this molecule is so unstable. 246 Chapter 4 NEL Section 4.3 Applying Inquiry Skills 5. Where did the evidence come from that led to the creation of VSEPR theory? 6. Locate two or more VSEPR Web sites and compare them. Which do you prefer? List two or more criteria for evaluating the sites and indicate how each site did based upon each criterion. GO www.science.nelson.com Making Connections 7. Enzymes make up the largest and most highly specialized class of protein mole- cules. Describe briefly how their three-dimensional structure influences their function. How does the “lock-and-key” analogy relate to molecular shapes and the highly specific nature of enzyme reactions? GO www.science.nelson.com 8. What are optical isomers? Describe the role that molecular shape plays in classi- fying optical isomers. GO www.science.nelson.com Extension 9. The VSEPR theory can be extended to five and six electron pairs to explain several other shapes of molecules, as shown in Table 2. Several other shapes are possible if one or more of the total number of electron pairs is a lone pair. (a) Draw Lewis structures for PCl5 and SF6. (b) Draw the Lewis structure for ClF3. If the two lone pairs are in the trigonal plane, predict the molecular shape. (c) Draw the Lewis structure for ICl4. If the two lone pairs are above and below the plane of the atoms, predict the molecular shape. Table 2 Expanded VSEPR Theory to Predict Molecular Shape General formula AX5 Bond pairs 5 Lone pairs 0 Total pairs 5 Molecular shape Geometry Shape diagram trigonal X bipyramidal (trigonal bipyramidal) 90˚ X PCl5 X A 120˚ Example X X AX6 6 0 6 octahedral (octahedral) SF6 X 90˚ X 90˚ X A X X X NEL Chemical Bonding 247 Multiple Bonding in VSEPR Models Evidence of multiple bonding can be obtained from, for example, the reaction rate of hydrocarbons; e.g., the fast reaction of alkenes and alkynes with bromine or potassium permanganate, compared to the slower reaction rate with alkanes. Further evidence indicates that the multiple bonds are shorter and stronger than single bonds between the same kind of atoms. Evidence from crystallography (e.g., the X-ray analysis of crystals) indicates that these multiple bonds can be treated like single bonds for describing, explaining, and predicting the shape of a molecule. This has implications for using VSEPR theory for molecules containing multiple bonds. Let’s look at some examples. SAMPLE problem VSEPR and Double Covalent Bonds Ethene (ethylene, C2H4(g)) is the simplest hydrocarbon with multiple bonding. Crystallography indicates that the orientation around the central carbon atoms is trigonal planar. Is VSEPR theory able to explain the empirically determined shape of this molecule? DID YOU KNOW ? Smelling Molecular Shapes Limonene, C10H16, is a naturally occurring compound that can exist in two different isomeric forms. One form is present in orange rinds and has a pleasant orange odour. The other isomer is identical in composition but different in shape. This isomer smells like pine or turpentine and is found in lemons and pine needles. The first step in testing the ability of VSEPR theory to explain H H the shape of ethene is to draw a Lewis structure of the molH C C H ecule. The second step is to count the number of “pairs” of electrons around the central atoms (the carbon atoms). In H H the case of multiple bonding such as a double bond, the double bond contains two pairs of electrons. The crystalloC C graphic evidence indicates a trigonal planar arrangement. H H The only way that VSEPR theory can accommodate this evidence is to count a multiple bond as a single group of electrons. In other words, you are counting the number of bonded atoms. There are three bonded atoms or sets of bonding electrons around each of the central carbon atoms (AX3). These electron groups repel each other to obtain minimum repulsion and, thus, a minimum energy state. The result, according to VSEPR theory, is a trigonal planar orientation—three atoms on a plane at 120°. VSEPR theory passes the test by being able to explain the trigonal planar shape of ethene. Now let’s see if VSEPR theory can pass another test by predicting the stereochemistry of the ethyne molecule. Example 1 LEARNING TIP Treat double and triple covalent bonds as one group of electrons when using VSEPR theory to predict shapes of molecules containing these bonds. Predict the shape and draw the diagram of the ethyne (acetylene, C2H2(g)) molecule. Solution H C C H H C H C The shape of the ethyne molecule is linear. Example 2 Predict the shape and draw the diagram for a nitrite ion, NO2. ACTIVITY 4.3.1 Shapes of Molecules (p. 277) Molecular models are important tools for understanding molecular shapes. 248 Chapter 4 Solution O N O − N O O The shape of the nitrite ion is trigonal planar. NEL Section 4.3 Practice Understanding Concepts 10. In order to make the rules of VSEPR theory work, how must multiple (double and triple) bonds be treated? 11. Use Lewis structures and VSEPR theory to predict the shapes of the following molecules: (a) CO2(g), carbon dioxide (dry ice) (b) HCN(g), hydrogen cyanide (odour of bitter almonds) (c) C3H6(g), propene (monomer for polypropylene) (d) C3H4(g), propyne (e) H2CO(g), methanal (formaldehyde) (f) CO(g), carbon monoxide (deadly gas) Applying Inquiry Skills 12. Is VSEPR a successful scientific theory? Defend your answer. Making Connections 13. Astronomers have detected an amazing variety of molecules in interstellar space. (a) One interesting molecule is cyanodiacetylene, HC5N. Draw a structural diagram for this molecule and predict its shape. (b) How do astronomers detect molecules in space? DID YOU KNOW ? Theories Just as scientists have special definitions for words that apply in the context of science (e.g., the definition of “work” in physics), philosophers who study the nature of chemistry have special definitions for terms such as “theory.” To them a theory is not a hypothesis. To philosophers of chemistry a theory uses the unobservable (such as electrons and bonds) to explain observables (such as chemical and physical properties). As a student you have probably found words that are used in different contexts in and out of the science classroom, such as “salt” and “decomposition.” What are some other words that you use differently in other contexts? Molecular Geometry Research A Canadian researcher doing important work in molecular geometry is Dr. Richard Bader (Figure 4), Professor Emeritus at McMaster University. Dr. Bader’s work includes the theoretical determination of electron density maps for small molecules, giving a visible interpretation of the molecular shapes and bonding within molecules (Figure 5). Note that the shape shown is consistent with the type of structure you have previously used to represent ethene. Viewed this way, single and double bonds are not really single or double structures—they are just different concentrations of electron density. Similarly, the unique carboncarbon bonds in benzene are part of a total molecular electron orbital structure, resulting in a particular electron density in the region around the ring. Dr. Bader’s work builds on previous bonding theories that have a critical limitation. “We have in chemistry an understanding based on a classification scheme that is both powerful and at the same time, because of its empirical nature, limited.” Dr. Bader applies quantum mechanics theory to determine the atomic structures of molecules and crystals. To the extent that this theory is supported by empirical evidence, it allows development of new theory, and may eventually lead to the ability to use computer models to accurately explain and predict forces, structures, and properties that currently can only be observed and measured. Figure 4 Dr. Richard Bader Figure 5 A representation of the electron density for an ethene molecule. NEL Chemical Bonding 249 EXPLORE an issue Take a Stand: Linus Pauling and the Vitamin C Controversy Linus Pauling became interested in chemistry at a young age because a friend had a chemistry set. Pauling graduated from Oregon State University in 1922 and obtained his Ph.D. from the California Institute of Technology in 1925. After a year in Europe studying with Sommerfeld, he became a chemistry professor at the California Institute of Technology in 1927 and remained there throughout his academic career. Pauling’s scientific fame came from his theory of chemical bonding, including the ideas of a shared pair of electrons, polar covalent bonds, electronegativity, and resonance structures. These ideas revolutionized thinking about molecular structure. For this work Pauling was awarded the Nobel Prize in chemistry in 1954. He continued his study of molecular structure and was one of the first to suggest helical structures of proteins and the relationship between disease and abnormal molecular structure. After the Second World War, Pauling used his fame as a Nobel Prize winner to vigorously fight the nuclear arms race of the United States and the Soviet Union. For his outspoken leadership against nuclear testing he was awarded the Nobel Peace Prize in 1962, becoming one of a very few people who have won two Nobel Prizes. Pauling’s fame as a scientist and as a social activist meant that he could easily command media attention whenever he spoke. When he announced in 1970 that large doses (megadoses) of vitamin C could prevent the common cold, and other illnesses as well, many people paid close attention. However, not everyone agreed that vitamin C is as useful in megadoses as Pauling claimed. There is still a huge interest in Pauling’s suggestion, in spite of no clear scientific evidence supporting his claim and some scientific studies that dispute it. Decision-Making Skills Define the Issue Analyze the Issue Identify Alternatives Defend the Position Research Evaluate (a) Briefly describe some claims being made today for the beneficial use of large doses of vitamin C. (b) Briefly describe some objections and criticisms of the claimed benefits. In small groups, discuss the following questions and obtain a consensus within the group. Report on your conclusions. (c) Pauling and other proponents of the benefits of megadoses of vitamin C, and the doctors and scientists opposed to this view have all claimed that science is on their side. Anyone can have an opinion or belief, but science requires more. What are the requirements for a claim to be scientifically valid? List some criteria. (d) To what extent do you think Pauling’s fame influenced public and scientific opinion about the benefits of vitamin C? Suppose someone with no scientific training and unknown to the public made this claim, would anyone notice or consider it seriously? If a Nobel Prize winner makes a claim disputed by other lesser-known scientists, how do we decide what to believe? (e) The vitamin C controversy is not the first time a famous scientist has made a claim that is disputed by most of the scientific community. What are the repercussions for a scientist who goes against the rest of the scientific community? Who usually “wins”? Is the practice and work of science completely objective? GO www.science.nelson.com Section 4.3 Questions Understanding Concepts 1. Use Lewis structures and VSEPR theory to predict the molecular shape of the following molecules. Include a 3-D representation of each molecule. (a) H2S(g), hydrogen sulfide (poisonous gas) (b) BBr3(l), boron tribromide (density of 2.7 g/mL) (c) PCl3(l), phosphorus trichloride (d) SiBr4(l), silicon tetrabromide (e) BeI2(s), beryllium iodide (soluble in CS2(l)) 2. Use Lewis structures and VSEPR theory to predict the molec- ular shape around the central atom(s) of each of the following molecules. Provide a 3-D representation of each molecule. (a) CS2(l), carbon disulfide (solvent) (b) HCOOH(g), acetic acid (vinegar) (c) N2H4(l), hydrazine (toxic; explosive) (d) H2O2(l), hydrogen peroxide (disinfectant) (e) CH3CCCH3(l), 2-butyne (reacts rapidly with bromine) 250 Chapter 4 3. Draw the Lewis structure and describe the shape of each of the following ions: (a) IO4 (b) SO32 (c) ClO2 Making Connections 4. Briefly describe Dr. Bader’s contribution to our under- standing of molecules. 5. Search the Internet for information on the current workplace and position of Dr. Ronald Gillespie, the co-creator of VSEPR theory. What degrees does he hold? What are some of the awards that he has won? What is his major topic of research? 6. Some scientists argue that taste has developed as a pro- tective mechanism. Many poisonous molecules taste bitter and ones that are useful to us have a more pleasant, often sweet, taste. Write a brief summary about the relation of taste to molecular structure. GO www.science.nelson.com NEL