Table 4. This table is cited in the paper Barendse, W. et al. Mammalian
Genome 8, 21 - 28.
The
locations of the genes mapped by linkage analysis in cattle, with
comparisons to humans, mice, rats and pigs.
The number of conserved syntenies and ordered segments per bovine
chromosome are indicated for these loci in
the column S.C. A four digit number appears, i.e., 2222 which means 2
conserved syntenies cattle-human, 2
conserved syntenies cattle-mice, 2 ordered segments cattle-human and 2
ordered segments cattle-mice. The
distance in cM from the proximal part of the map is indicated so that 1:1
is chromosome1:1cM. Interesting
individual and group comparisons are indicated with superscripts. Gene
locations were taken from GDB, MGD,
RATMAP and PiGMaP.
Locus
Bta
Hsa
Mmu
Rno
Ssc
S.C.
IFNAR1:
SOD1:
9
KAP8:
POU1F1:d
13:116
UMPS:
CRYG8:
SST:d
KNG:
CRYAA:
PDE1:
3333
SSBP:
ACVR2:
PDE6A:
FN1:
INHA:
AK2:
FCGR1:
OSG:
IL6:b
1:1
1:3
2222
1:0-8
1:40
21q22.1
21q22.1
3p11
1:66 (q31-q36)
1:90
1:90 (q23-q25)
1:113
3q27
1:139
2:26
16:62.8
16:61.2
11
16:42.7
3q13
3
3q28
21q22.3
2:43-65
UA
2:76-100
UA
2:84-92
2:100-118 2q34
2:115
2q33-q34
2:125
1p34
3:24
1q21
11..
3:45
4:0-3
7p21-p15
16:19.4
11
17:17.4
UA
5q31.2-q34 18:31.0
1:36.1
1:41.6
9
4
3:49.0
5:17.0
UA
4
UA
1434
DDC:b
TCRG:b
TCRB:b
SYT1:
4:7-17
7p11
4:69-81
4:88-90
5:4
12cen-q21
11:7.0
7p15-p14
13:10.0
7q35
6:19.0
10:38.5
14
17
4
2233
IFNG:
5:32-46 (q22-q24) 12q24.1
5:19
COL2A1:a
LYZ:
IGF1:
5:75
10:64.0
5:39
12q12-q13.2 15:47.0
5:37-53 (q23)
12
10:63.5
5:49-63
12q22-q23 10:46.0
7
MB:
NUBA:
CYP2D@:
IF:b
5:56
5:94
22q12
15:43.7
EGF:b
SPP1:
5:101-117 22q13
15:47.2
6:0-45
4q24-q25
3:87.7
1235
6:36
4q25
3:65.2
6:67
4q11-q21
5:61.0
8:140
KIT:f
GABRA2:f
FABP-HL:
CSN1A:
6:101
4q12
6:104-106 4p13-p12
6:106-108
6:111 (q26-q33)
5:45.2
5:43.0
UA
5:47.0
8:15
CSN3:e
6:111
8:100-110
ALB:f
6:112-126 4q11-q14
5:54.0
8:5.0 (q12)
FGFR3:f
6:124-166 4p16.3
5:20.0?
QDPR:
6:138-152 4p15.3
5:30.0
PDE6B:
6:145
4p16.3
5:18.84
LDLR:
7:14-50
19p13.2
9:5.0
2535
AMH:
7:32
19p13.3
10:41.5
CSF2:
7:32
5q23-q31
IL4:
7:43
5q23-q31
11:28.0
SPARC:
7:58-96
5q31-q33
11:30.0
FGF1:
7:70-84
5q31.3-q33.2
18:19.0
RASA:b
7:104 (q24-ter) 5q13
13:45.0
Locus
Bta
Hsa
Mmu
8p22
8:32.0
Rno
10
Ssc
S.C.
CPNB:
8:19
11..
LPL:
14q12-q14
GGTB2:
ALDOB:
C5:
SOD2:b
5
CGA:b
GJA1:b
CLTA:
11..
TCRA:
BRN:
SRN:
AKAP:
ACTG2:
CD8A:
GGTA1:
SHR:
8:117-129
8:129
8:147
8:187
16
9p21-q13
4:18.6
9q22.3-q31
nms
6q25.2
9q33
9:22-34
1212
9:50
6q14-q21
4:9.5
9:90-122
6q21-q23.2 10:26.5
10:0-3
12q23-q24
10:2-18
10:23
10:23
10:82
11:14-54
2222
11:54
2p12
11:103
11:103
17:7.6
14q11.2
14:19.7
2p13.1
UA
6:31.5
9q33-q34
2:26
1:110-120
DBH:
LGB:
VIM:c
11:138-144 9q34.3
11:141 (q28)
13:44
10p13
2:15.0
2:7.0
2121
CHGB:
AVP:
GHRH:
TG:b
IL7:b
CRH:b
NCAM:b
MCAM:
PTH:f
ARRB:
HBB:f
KCNA4:f
FSHB:f
PIGR:e
ATP2B4:e
14:51
FH:e
ADORA1:e
AT3:e
FGG:
8:20
FGF2:
GUCY:
ALDH2:
ADRBK2:
MT2A:
13:66-72
20pter-p12 2:75.0
13:68-82
20p13
2:73.0
13:96-110 20q11.2
2:87.0
14:1-33 (q12-q16) 8q24
15:35.09
1222
14:37-43
8q12-q13
3:6.6
14:54
8q13
3:8.0
15:26
11q22.2-q22.3
9:28.0
1333
15:35-39
UA
15:51 (q22-q27) 11p15.2-p15.1
7:53.0
15:63
7:50.3
15:63 (q22-q27) 11p15.4
7:50.0
15:69
11p14
2:61.0
15:72 (q24-ter) 11p13
2:60.0
2:37 (p16-p12)
16:5 (q13) 1q31-q41
UA
1111
16:5
1q25-q32
1:70.3
16:5
1q42.1
1:74.1
16:1-9
1q32.1
UA
16:73
1q23-q25.1 1:84.6
17:6 (q12-q23)
4q28
3:46.4
2222
17:51-53
4q25-q27
3:19.9
17:67-71
17:84-110 12q24.2
UA
17:140
22q11
5:66.0
18:24-52
16q13
8:45.0
7
8
1
1q22
2q31-q34
2222
MC1R:
PIM1:cg
GH1:
18:26-50
16q24.3
8:68.0
18:99
6p21
17:16.4
19:44-58 (q17-qter) 17q22-q24
11:65.0
12:32 (p14) 1111
MAPT:
19:60-70
17q21
11:64.0
GFAP:
19:65
17q21
11:62.0
HD5S39
20:16
5q11.2-q13.3
1232
HEXB:
20:16
5q13
13:50.0
MAP1B:
20:22-28 (q14)
5p13
HTR1A:
20:25
5cen-q11
13:57.5
ANP1:
20:55
GHR:
20:55
5p14-p12
15:4.6
16q13-q14
PRLR:
20:55
5p14-p13
15:4.6
2
Locus
Bta
S.C.
Hsa
Mmu
Rno
Ssc
IGF1R:
21:6-24
11..
22:88
3q11-q12
22:100
3p25
23:5
6q21.3
GPX1:
HRH1:
DYA:
15q25-qter 7:33.0
UA
4
1212
VEGF:
MOG:
TNFA:
DRB:
23:18
23:30-36
23:30-34
23:32
7:50-60
CYP21:
7
SMHCC:
PRL:
7:68
FECH:
PACAP:
CDH2:
DSC3:d
CYB5:
PRM1:
EPO:
PLANH:
ASAT:
11..
DNTT:
PSAP:
RBP3:
GSTP1:
OPCML:d
CD5:
MAOA:e
23:41
UA
UA
6p22-p21.3
6p21.3
6q21.3
23:33
6p21.3
23:33
6p21.3
6p22.2-p22.1
20
17:19.06
17:18-23*
20
20
17:18.77
17:18-23*
13:14.0
24:0-24
18q21.1-q21.31
18:39.0
2122
24:15-33
24:28
18q12.1
18:6.0
24:34
9p
18:7.4
24:63-73
18q22.3-q23
25:16-28(q12-13) 6p13.13
16:3.4
23..
25:56-62
7q21.3-q22.1
5:84.0
25:69
7q22.1-q22.3
1:61.1
26:35
26:29-41
10q23-q24 19:44.0
28:2-48
10q21-q22 10:27.3
12..
28:92
10q11.2
14:13.0
29:74
11q13
19:0.0
1212
29:82
11
9:10.0
29:97
11q13.1
19:5.0
X:65
Xp11.4-p11.3
X:5.0
20
17
10q12
12
16
Total S.C.
37 53 31 35
Conserved syntenies cattle-human = 37
cattle-mouse = 53
Ordered segments
cattle-human = 31
cattle-mouse = 35
UA:
unassaigned
blank:
no reference found
*:
MHC region in mice
a:
Loci close to an evolutionarily conserved breakpoint
b:
Lack of conservation of synteny cattle-mice coupled to lack of
conservation of gene order cattle-humans
c:
Conservation of synteny of human-mice but not of cattle
d:
Conservation of gene order or synteny cattle-mice but not for
cattle-human
e:
Lack of conservation of distance between genes or chromosomal
landmarks
f:
Conserved segment with different orders in cattle, humans and mice
g:
Compare to other loci on BTA23, HSA6p and MMU17
GDB v6.0 11 March 1996
MGD 13 March 1996
PiGMaP 14 March 1996
RATMAP 18 March 1996