CVR-2011-414R1 eNOS & EPC mediated neoangiogenesis Supplementary Data Supplementary Methods Immunofluorescence analysis For pre-treatment slices with 3 µm thick deparaffinised sections were placed in Coplin jars with 0.05% citraconic anhydride solution, pH 7.4 for 1 hour at +98°C and then incubated overnight at 4°C with the first antibody, followed by the appropriate secondary antibody at 37°C for 1 hour. Immunofluorescence studies were performed by applying polyclonal antibody against podocalyxin (R&D Systems, USA) to detect capillaries and endothelial cells. Monoclonal antibody against α –sarcomeric actin (clone5c5, Sigma-Aldrich, USA) was used to detect cardiomyocytes. In co-immunostainings of bone marrow transplanted mice for podocalyxin a GFP-specific antibody (abcam, United Kingdom) was used to enhance GFPfluorescence. Cycling cardiac cells were identified by immunostaining for proliferation marker Ki67 (Novocastra, United Kingdom). Proliferating endothelial cells and fibroblasts were identified by co-immunostaining for podocalyxin and fibronectin. Monoclonal antibody against fibronectin (abcam, United Kingdom) was used. To detect eNOS-positive cells in bone marrow of BMT-mice a polyclonal antibody against eNOS (abcam, United Kingdom) was applied. FITC-, TRITC–, Biotin- and Peroxidase-conjugated anti-mouse IgM, anti-mouse IgG, anti-rabbit IgG, and anti-goat IgG (all Dianova, Germany) were used as secondary antibodies and for amplification if necessary. To perform wash steps 4xSSC buffer was used. Sections were counterstained with DAPI (Calbiochem, Germany) and mounted with fluorescent mounting medium (Vectashield, Vector Laboratories, Burlingame, CA) for fluorescence microscopic analysis. All sections were evaluated using a Nikon E600 epifluorescence microscope (Nikon, Germany) with appropriate filters. In addition 1 CVR-2011-414R1 eNOS & EPC mediated neoangiogenesis colocalization of stainings (e.g. podocalyxin and GFP) were controlled using a confocal microscopy unit (QLC100, VisiTech; United Kingdom on a Nikon E600 microscope). Histological examination of bone marrow Tibias collected from animals with and without BMT were fixed in PBS-buffered formalin (4%), decalcified in Osteosoft (Merck, Germany), paraffin-embedded, sectioned along the mid-sagittal plane in 3 μm-sections. Sections were stained with haematoxylin and eosin. Immunofluorescence for eNOS was performed as described above to exclude the effect of eNOS deficiency in the recipient on the engraftment of eNOS-positive bone marrow. eNOSpositive and negative cells were counted in 5 randomly chosen microscopic fields. The percentage of eNOS-positive cells in eNOS-/- / WT-mice 4 and 9 weeks after bone-marrow transplantation varied between 80-90% of the non-transplanted wild-type mice. Supplementary Figure Legends Fig. 6 Morphology of the bone marrow in bone-marrow transplanted mice (A) shows representative examples of bone marrow sections of bone-marrow transplanted animals 4 weeks after bone-marrow transplantation and control animals without BMT stained with haematoxylin and eosin. There is no significant morphological difference between bonemarrow transplanted animals and corresponding controls. Bars = 30µm (B) depicts eNOS-positive cells in the bone marrow of an eNOS-/- BMT mouse received wildtype bone marrow, eNOS (red). Nuclei are stained blue by DAPI. eNOS-positive cells are marked by arrows. Bars = 10µm. 2