Reviewer's report N°1 Specific comments The title should state that the scope of the study is to compared newer and older quinolones. The title was changed to: “Severe Pneumococcal Pneumonia: Impact of New Quinolones on Prognosis.” Abstract: the objective of the analysis is to compare newer and older quinolones, rather than determining risk factors for mortality. For the latter objective the sample size would largely be inadequate. We changed “objectives” as wished: To evaluate the outcome of patients with severe pneumococcal CAP, focusing on the impact of new rather than old fluoroquinolones combined with β-lactam in the empirical antimicrobial treatment. Abstract: “three independent factors associated with survival in ICU” rather than outcome. Correction performed Abstract: conclusions, levofloxacine is associated with lower mortality, rather than being more effective. Correction performed In the introduction there is no mention on the ERS guidelines (Woodhead M., ERJ 2005) in which the recommended treatment regimen for CAP is a beta-lactam plus a macrolide OR a quinolone (levofloxacine, moxifloxacine). Please consider and comment. This reference was added in the manuscript as wished. Methods: amoxicillin and cefotaxime doses of 50 mg/kg/d are at the lower edge of the recommended range. Can the author specify that the mean administered doses were similar in Group A and Group B ? French guidelines during the study period recommended these doses. Observed doses in both groups were similar. As specified in the methods the survival curves have been drafted and compared for each patients in each group. Does figure 1 show survival in group A compared to group B ? If so, is it correct to label the figure as a comparison of the effect of beta-lactam plus old quinolones vs. beta-lactams plus newer quinolones ? We do not understand your comment as the label of Figure 1 is: 15-day survival curves in patients treated with β-lactam combined with levofloxacin versus β-lactam combined with ofloxacin or ciprofloxacin Discussion, first sentence: the main finding of the study is that newer quinolones are associated with improved survival rather than being more effective on severe pneumococcal CAP. We agree with your comment and the sentence was changed as wished. Reviewer's report N°2 Reviewer's report: MAJOR COMPULSORY REVISIONS: 1. Material and Methods. Patients. (page 4) Definition of CAP: “We excluded patients coming from nursing homes or hospitalized within 30 days”: if the authors are going to exclude Health care-associated CAP, 90 days should be used (Ref. Niederman MS. Hospitalacquired pneumonia, health care-associated pneumonia, ventilator-associated pneumonia, and ventilator-associated tracheobronchitis: definitions and challenges in trial design. Clin Infect Dis. 2010 Aug 1;51 Suppl 1:S12-7.). We agree with your comments. According to our database, no patient was hospitalized within 90 days prior to developing pneumonia. Consequently we changed 30 days for 90 days in the revised manuscript. 2. Appropriate drug dosage (page 5): please refer to international literature or reference book your definition of “appropriate”, in particular regarding pro kilo dosage of beta-lactams and levofloxacin dosage (500 mg/12h is an “evidence based” dosage in clinical practice to treat severe infections, however current CAP guidelines reported 750 mg OD). Please discuss your choices. These points were clarified in the manuscript as followed: Appropriate drug dosages were defined in the French recommendations [1991, 1999, 2006] as: amoxicillin > 50 mg/kg/d, cefotaxime > 50mg/kg/d, ceftriaxone > 20 mg/kg/d, piperacillin > 200 mg/kg/d, ofloxacin = 200 mg/12h, ciprofloxacin = 400 mg/12h, levofloxacin = 500 mg/12h. These drug dosages for β-lactam, ofloxacin and ciprofloxacin were unchanged during the study period. Thus, doses used in both groups were similar. 3.Table1: a. Please specify that age was measured in years. Correction performed b. Please show also percentages for male sex and PSI 4/5. Correction performed c. Please report in table 1 the #-lactams used in the two groups and the p value for between group comparison. A difference in #-lactams used could influence the results. The number and percentage of patients treated by cephalosporins is now reported in Table 2 4. Apparently in group B a higher proportion of patients received a third generation cephalosporin as #-lactam. Is there a significant between group difference? Theoretically an in vivo higher activity of cephalosporin in comparison to amoxicillin-clavulanic acid could contribute to the differences observed in mortality. The authors should comment in the discussion if this difference could influence the results. In our study, the use of cephalosporin is more frequent in group B than in group A (p=0.01). This point was added in Table 2. However, as reported in Table 3, the use of cephalosporin rather than amoxicillin has no impact on prognosis. Such a result is not surprising as, to the best of our knowledge, no clinical study demonstrates a third generation cephalosporin is superior to amoxicillin to treat pneumococcal CAP due to non penicillin-resistant S. pneumoniae as soon as drug dosage is correct. However, this point was added in the limitations of our study. 5. Was the antibiotic therapy modified after results of cultures? In how many patients and which antibiotic were used? This could be reported to better interpret the results. The goal of our study was to compare the empirical drug regimens. So, we did not focus on the antibiotics instituted after microbiological documentation. In our unit, we apply a strict deescalation strategy. This was not modified during the study period. 6. The phrase “all underlying diseases...in this analysis” appears unclear. According to table 3 Chronic heart failure appeared associated to mortality, while cephalosporin and bacteremia were not: please clarify. Moreover, mechanical ventilation is not reported in table 3: please report. The sentence was clarified. Mechanical ventilation was reported as MV on D1 in Table 3. 7. Table 3: Please show also percentages for male sex, PSI 4/5, patients in group A. Correction performed 8. Why sepsis-related complications and HA-LRT superinfections were not included in the multivariate model? Their development could be strictly related to the empirical antibiotic therapy used. If authors believe that these complications could be mainly related to factors other than antibiotic therapy (for example invasive procedures), why did they not excluded patients with these complications from the analysis? As our precise goal was in fact to compare old vs. new quinolones (this point was asked by reviewer N°1), we focused on prognostic factors present on ICU admission or within the first 48 hours of ICU stay. These points are now clearly announced in the chapter methods (Data collection and statistical analysis). Moreover, we think that complications occurring during the ICU stay are more an explanation of death than a cause of death. Consequently, it would limit the interest of including these variables in the prognostic analysis. 9. Discussion “Finally, some important prognostic parameters such as the time elapsed between admission and the first dose of antibiotic were not taken into account in our study.”: Why? It is a fundamental information to be inserted in statistical analysis. If not available, it should be discussed more accurately. We agree with your comments. This point is now more clearly discussed as follows: Before 2006, we did not have computerized data charts thus, exact time of admission and antibiotics admission, particularly for patients transferred from other departments/hospitals cannot be obtained. MINOR ESSENTIAL REVISIONS: 10. Results: “we identified 70 patients treated by a #-lactam combined with a fluoroquinolone, including 53 men and 17 women. The mean age was 63.8 ± 16.8 yrs. S. pneumoniae was identified in blood cultures in 25 patients. For 18 patients infection was polymicrobial.” AND “Thirty-eight patients were classified as Group A. #-lactams combined with ofloxacin (n=33) or ciprofloxacin (n=5) were amoxicillin ± clavulanic acid (n=16), a third generation cephalosporin (n=20), and piperacillin-tazobactam (n=2). Thirty-two patients were classified as Group B. #-lactams combined with levofloxacin were amoxicillin ± clavulanic acid (n=5), a third generation cephalosporin (n=26), and piperacillin-tazobactam (n=1)”: please report percentages. Percentages were added. 11. Global revisions of English language is desirable: e.g. risks factors "of" mortality, treated "by", but the difference "is" not statistically significant, etc..). Reviewer's report N°3. Major Revisions The study has several methodological problems. Methodological issue Aim and design There is a discrepancy among the aim of the study, the design of the study and the main findings. - Aim:”to analyze risk factors for mortality in patients treated by a a combination of B-lactam plus fluoroquinolone for severe pneumonia.” -->based on this aim, readers would like to see definitions/aOR of factors associated with mortality in this group of patients. We do not understand your comments, since all variables were defined in the text and we provided AOR in the chapter results. - Main findings: “Levofloxacin combined with b-lactam is more effective than ofloxacin or ciprofloxacin combined with a b-lactam in severe pneumococcal CAP.” -->This speculation cannot be derived from the design of the study applied and the data presented. We modified the sentence and now, we concluded, as wished by reviewer N°1 “ that, when combined a β-lactam, levofloxacin is associated with lower mortality than ofloxacin or ciprofloxacin in severe pneumococcal community-acquired pneumonia.” - Design: Dr Olive and coworkers designed a retrospective observational study during 13 years. During this long period different techniques have been developed that could have impacted the outcome analyzed as correctly mentioned by the authors. Based on the particular objective presented in the introduction, authors could think about different designs, such as a nested case-control study or a therapeutic observational retrospective study. For us, the reported study is “a therapeutic observational retrospective study. - Study population: It would be interesting to have the number of patients with CAP admitted to the ICU during the long study period in order to have an idea regarding the inception cohort. It should be noticed that the study period was composed by 13 years with 83 severe pneumococcal pneumonia (6-7 patients/year) enrolled. This should be explained by the authors who should also provide information regarding the study setting (which king of ICU? Where? Hospital beds? and so on). These points were added in the revised manuscript (number of beds in ICU, kind of ICU, and number of CAP treated in our ICU during the study period). Definitions / criteria: - Authors should better clarify the definition of severe CAP: patients admitted to ICU? PSI risk class 4?? My suggestion would be to include all the patients admitted to ICU or those with a PSI risk class of 5 according to the previous literature. We chose to include patients both admitted in ICU and exhibiting a PSI risk class 4 or 5. We excluded patients in class 2 or 3, even if they were admitted in ICU. According to IDSA/ATS Guidelines published in 2007, “objective criteria to identify patients for ICU admission included…PSI severity class IV or V” Moreover, our choice appears logical since among the 21 patients in class 4, 12 were mechanically ventilated, 5 had non invasive ventilation, and 4 exhibited septic shock. - Is not completely clear to me the reason why the authors have decided to exclude penicillinresistant strain of SP. Please, clarify. In group A, the only effective antibiotic against S.pneumoniae was the beta-lactam, we limited the analysis to penicillin susceptible strains as it allowed us to evaluate the added benefit of a fluoroquinolone. - Authors should give references for the appropriate drug dosages given in the manuscript. References were added. - It would be also necessary to give the exact definition for septic shock that is included in the multivariable analysis in the results section but not mentioned in the Materials & Methods section. Shock was defined on page 5 with a precise reference. Shock was considered as a septic shock, because patients had concomitant bacterial pneumonia. - The definition for time to clinical stability is well standardized in literature (see papers published by Halm, Menendez or Julio Ramirez). Authors could use criteria for clinical stability already validated in literature. Criteria proposed in the literature to define clinical stability are the followings “A variable was considered stable if all measurements in the 24-hour period met stability criteria—a convention used by other investigators. Stable values for vital signs were selected prior to analysis based on the literature and common clinical practice. The stability cut point for HR was at least 100 beats/min; SBP, more than 90 mm Hg; and RR, 24 breaths/min or less. Oxygenation was considered stable if the oxygen saturation was 90% or greater or the PaO 2 was 60 mm Hg or greater and a patient was not receiving mechanical ventilation or supplemental oxygen by face mask.” [Halm et al JAMA 1998]. Of course, such a definition is not applicable for ICU patients receiving mechanical ventilation. We used in this paper definitions used in a previous paper published by our team (Chest 1999; 116: 157) Outcome I strongly suggest to focuse the analysis just on one outcome. The outcome mentioned on pag 9 that was associated with septic schock, age, and initial treatment is not clear to me. What kind of mortality was used in this case? Mortality on day 15, day 28 or ICU discharge? Furthermore, what is the rationale in analyzing only mortality on day 15, day 28 and at the time of ICU discharge? Why did not the authors chose only the mortality at ICU discharge as the sole outcome? We agree with you that our results could be confusing. We added in the text and in Tables 3 and 4 that outcome was evaluated at ICU discharge. We chose to also report mortality data evaluated on D15, because in severe infectious diseases the antimicrobial treatment influences only the initial course of disease (i.e., in VAP, adequate antimicrobial treatment improves the cure rate but has no significant impact on ICU mortality). In addition, we suppressed data about mortality on D28. Speculation As data are presented, authors cannot declare that “when severe CAP causative agent in SP, a combination levofloxacin plus a beta lactam is more effective than a combination ofloxacin or ciprofloxacin plus beta lactam”. This sentence in the Discussion section cannot be accepted. We agree with your remark. As wished by the reviewer N°1, this sentence was replaced by the following: “levofloxacin combined with a β-lactam is associated with improved survival in comparison with ofloxacin or ciprofloxacin combined with a β-lactam”