AP Biology Course Description 2015-2016 AP Biology is intended to be the equivalent of a two-semester college introductory biology course taken by biology majors during their first year. Therefore, we will be covering a large amount of material in a limited time period. You will be expected to come prepared to class having appropriate assignments completed so that we can maximize the time that we are given. These assignments may include reading from the textbook, writing assignments, or lab write-ups. The textbook we will be using is Life: The Science of Biology by Sadava, Heller, Orians, Purves, and Hillis (Eighth Edition), $115. This class will meet during 4th period, and sometimes we will be meeting through lunch in order to complete a lab. All students enrolled in this class are required to take the AP exam. I. II. INTRODUCTION AND SCIENTIFIC METHOD a. Review summer assignment i. Discuss readings from selected popular books that emphasize big ideas that will be discussed in AP® Biology b. Scientific Method i. Readings In Life 1. Chapter 1 – Studying Life 2. Chapter 53 – Behavior and Behavioral Ecology ii. Lecture Topics 1. Themes of Biology 2. Aspects of Animal Behavior iii. Activities 1. Introduction to Inquiry – Students investigate four unknown substances and make predictions using prior knowledge, observations, and testing to predict the type of substances. 2. Animal Behavior Lab – Students observe behavior of pillbugs and then make predictions about the behavior when introduced to varying environmental conditions. This is a simple student-designed investigation intended to introduce students to the concept of designing and carrying out individual investigations. UNIT 1: LARGE-SCALE INTERACTIONS a. Evolution i. Readings in Life 1. Chapter 21 – The History of Life on Earth 2. Chapter 22 – The Mechanisms of Evolution 3. Chapter 23 – Species and Their Formation ii. Lecture Topics 1. Microevolution and Hardy-Weinberg equilibrium 2. Variation and Natural Selection; Types of Natural Selection 3. Concepts of Species; Mechanisms of Speciation 4. Earth History and Macroevolution 1 iii. Activities 1. Natural Selection of Butterflies: Students will use various backgrounds (environments) and colors of hole-punches (butterflies) to track how frequencies change within populations over several generations. Populations for each generation are graphed to visually show the change over time. 2. Hardy-Weinberg problems: Various problems are given to students that require them to use their knowledge of HardyWeinberg equilibrium equations in order to solve for phenotypic and allelic frequencies. 3. Investigating Hardy-Weinberg with “Goldfish” populationStudents use a population of goldfish and the less desirable pretzel fish to calculate H-W frequencies over 5 generations. The results are then graphed and analyzed. b. Classification/Diversity of Life i. Readings in Life 1. Chapter 25 – Reconstructing and Using Phylogenies 2. Chapters 26 – 33 – Selected readings from text; not whole chapters – emphasis on evolution of organisms ii. Lecture Topics 1. Construction of phylogenetic trees and evidence used to create phylogenetic trees 2. Evolutionary trends - endosymbiosis, plants evolution to land from water, derived characters within animal groups iii. Big Idea #1 Laboratory Investigations 1. dnadarwin.org Case Studies: Students will choose a specific case study working through the information to either design or interpret a phylogenetic tree using gene sequences from Geneious. iv. Activities 1. Construction of cladograms using various tools – hypotheses are made about the “relationships” of the tools to each other and must construct a plausible cladogram including an outgroup. c. Ecology i. Readings in Life 1. Chapter 52 – Ecology and the Distribution of Life 2. Chapter 54 – Population Ecology 3. Chapter 55 – Community Ecology 4. Chapter 56 – Ecosystems and Global Ecology 5. Chapter 57 – Conservation Ecology ii. Lecture Topics 1. Influence of Abiotic and Biotic Factors in an Ecosystem 2. Population Ecology 3. Community Ecology 4. Ecosystems and energy within ecosystems 5. Conservation efforts 2 III. iii. Activities 1. Stream Ecosystem Survey/Study – Initially, we explore abiotic vs. biotic factors by making observations about the areas of study, then the collection of organisms and data takes place, and finally we end the lab by determining the relative importance of each species collected/observed by calculating their density, size, or role in the ecosystem. Students also construct an illustrative model of the ecosystem components UNIT 2: CELLULAR PROCESSES: CELL STRUCTURE a. Biochemistry i. Readings in Life 1. Chapter 2 – The Chemistry of Life 2. Chapter 3 – Macromolecules and the Origin of Life ii. Lecture Topics 1. Chemistry Review 2. Water Chemistry; Acids and Bases 3. Organic Compounds including the Origin of Life from basic organic compounds iii. Activities 1. Building of Organic Compounds: Students will use monomers to construct polymers of the various organic compounds. For the protein molecule, the students will also have to describe each amino acid with its appropriate characteristics (polar/nonpolar, charged, acidic, basic, etc.) and predict a folding pattern based upon the interactions of the amino acids for their group. 2. Investigating Macromolecules in Food – Students must make predictions and then test for the presence of specific organic compounds present in certain foods. iv. Lab that tests various biological substances buffering capabilities compared with a buffer solution and water. b. Cell Structure i. Readings in Life 1. Chapter 4 – Cells: The Working Units of Life 2. Chapter 5 – The Dynamic Cell Membrane 3. Chapter 51 – Salt and Water Balance and Nitrogen Excretion 4. Chapter 44 – Neurons and Nervous Systems 5. Chapter 45 – Sensory Systems ii. Lecture Topics 1. Cell Sizes and Functions; Comparison of prokaryotic cells to eukaryotic cells 2. Cell Organelles (organelles such as chloroplasts and mitochondria are covered in greater detail during other units, but discussion includes endosymbiotic theory) 3. Cytoskeleton and Related Structures 4. Structure of Cell Membrane and its Functions 5. Maintenance of homeostasis with nephrons in kidneys and related osmoregulation in other animals 3 IV. 6. Structure and Function in nervous systems (neurons, resting potential, action potential, synapses) 7. Structure and Function of the human brain iii. Big Idea #2 Laboratory Investigation 1. Diffusion and Osmosis – Students will explore the concept of diffusion using a model membrane system that will lead into an investigation of osmosis. Students will use dialysis tubing bags in various molarities to observe the rates of diffusion when molarities change by calculating percent change in mass of the bags. Students will then devise a set of procedures to determine the solute potential of different potato samples. The molarities are not labeled, so in addition to calculating the solute potential of the potato, they will also need to determine the correct “order” of the solutions. After determining the solute potential of the different potatoes, students must then hypothesize why the solute potentials are different in the various potatoes. iv. Activities 1. Microscope/Cell Lab – students gain practice using microscope and identifying various types of cells (bacteria, plant, animal). Students must make comparisons among similar groups (why do some plants have pigment producing structures while others do not) and between groups (plant vs. animal cell) in addition to looking at micrograph pictures and making identifications of various organelles 2. Cell Size Limitations – adapted from various resources Students first cut out agar cubes in specified dimensions and time how long it takes for diffusion to completely occur. They then calculate the surface area to volume ratio for each cube. They must then design their own ideal cell that maximizes surface area to volume ratio. We then have cell races to determine which cell has the highest mass, but shortest diffusion time. 3. Lights, Camera, Action Potential: Students make a model of the generation of the action potential focusing on the movement of ions into and out of a cell and the resulting charges and effects this has on the neuron. They will then complete an extension of this activity by researching epilepsy and the types of drugs that are used to treat seizures. They must explain the efficacy of the drug and then research to see if there are drugs currently being used that are similar to their designs. UNIT 3: CELLULAR PROCESSES: MAKING ENERGY a. Respiration i. Readings in Life 1. Chapter 6 – Energy, Enzymes, and Metabolism 2. Chapter 7 – Pathways that Harvest Chemical Energy 4 ii. Lecture Topics 1. Energy and the Cell – Energy conversions within the cell; Role of ATP 2. Enzyme Chemistry 3. Cellular Respiration Overview/Energy Release and Storage 4. Stages of Cellular Respiration and Fermentation iii. Big Ideas #2 and #4 Laboratory Investigations 1. Enzyme Catalysis - Students will use the enzyme catalase to explore the effect time has on the rate of an enzymecatalyzed reaction by titrating to determine the amount of hydrogen peroxide that was not broken down by catalase. They will also compare non-catalyzed reaction to the effect of the enzyme-catalyzed reaction. In analyzing the data, students will have to complete rate calculations and relate structure to function with the catalase enzyme. 2. Cellular Respiration in Germinating Peas – Students will carry out an investigation exploring how microrespirometers can be used to determine the amount of oxygen consumed by germinating peas as they respire at room temperarture. Students will analyze and graph their data, using a report to explain the results that were obtained by their group. iv. Activities 1. Role-playing of Respiration – Using various labeled cards and pieces of paper, students must model the pathway of the electron transport chain in cellular respiration. Students not involved in “moving” through the electron transport chain are responsible for providing the narration to illustrate this concept. 2. Fermentation of Sucrose: Students carry out an investigation where the fermentation of sucrose is used to create a desirable product, root beer. This activity allows the students to see a connection to scientific methods in the real world with production of food products. b. Animal Systems in Support of Respiration i. Readings in Life *Note – Entire chapters will not be read for this unit. Selected portions highlighting the structure to function relationship of functional units as well as portions that highlight the maintenance of homeostasis within an organism. 1. Chapter 47 – Effectors: How Animals Get Things Done 2. Chapter 48 – Gas Exchange in Animals 3. Chapter 49 – Circulatory Systems 4. Chapter 50 – Nutrition, Digestion, and Absorption 5. Chapter 41 – Animal Hormones 6. Chapter 18 – Immunology ii. Lecture Topics 1. Sarcomere as a functional unit; Interaction of the muscular system with the nervous system 5 2. Alveoli and capillaries as functional units; Interactions between respiratory and circulatory system in maintaining homeostasis 3. Villi as a functional unit; Interaction between digestive and circulatory system in maintaining homeostasis 4. Thermoregulation in animals 5. Cell communication and Signal transduction pathways in animals 6. Feedback control mechanisms in animals 7. Structure and function in immune systems iii. Activities 1. Evolution of each system is shown through a development of a cladogram that shows derived characteristics for each animal group. 2. Great Animal Systems Challenge: Students must look at systems and their interactions and connections through structure to function relationships, processes occurring as a result of conformational changes,etc. to complete this activity. c. Photosynthesis and Plant Systems in Support of Photosynthesis i. Readings in Life 1. Chapter 8 – Photosynthesis: Energy from Sunlight 2. Chapter 34 – The Plant Body 3. Chapter 35 – Transport in Plants 4. Chapter 37 – Regulation of Plant Growth 5. Chapter 39 – Plant Responses to Environmental Challenges ii. Lecture Topics 1. Overall reactions for photosynthesis 2. Light reactions for photosynthesis 3. Calvin cycle 4. Adaptations for C3, C4, and CAM plants 5. Evolutionary trends in plants (adaptations allowing plants to move from water to land, reproductive roles of angiosperms) 6. Movement of molecules throughout plant body focusing on role of transpiration in maintaining homeostasis 7. Cell communication and Roles of hormones in plants 8. Adaptations plants have developed for protection in increased survival iii. Big Idea #2 Laboratory Investigation 1. Photosynthesis – Students will first isolate and observe the pigments present in a spinach leaf. The rates of photosynthesis will then be determined with isolated chloroplasts from spinach using DPIP. Environmental factors such as amount of light present, presence of chloroplasts, and temperature of chloroplasts will be tested. 6 V. iv. Activities 1. Role Playing of Photosynthesis – Students use various labeled cards and pieces of paper to model the lightdependent reactions of photosynthesis. Students not involved in “moving” through the light dependent reactions are responsible for providing the narration to illustrate this concept. 2. Activity where students propose a response to explain the sequence of deaths of various plants (C3, C4, and CAM) in an enclosed container. Students must have an understanding of the differing strategies employed in the metabolic pathways of these plants. 3. Transpiration lab- Students will mass plants over the course of a week as they are exposed to various environmental conditions (control, constant light, wind (fan), and high humidity). After calculation the percent mass lost in each plant, they must explain the results using their knowledge about transpiration and concentration gradients UNIT 4: MAKING CELLS AND MAKING NEW ORGANISMS a. Mitosis, Meiosis, and Genetics i. Readings in Life 1. Chapter 9 – The Eukaryotic Cell and Mitosis 2. Chapter 10: Genetics: Mendel and Beyond ii. Lecture Topics 1. Role of cell cycle in asexual reproduction 2. Regulation of eukaryotic cell by a molecular control system 3. Role of meiosis in sexual life cycles 4. Significance of genetic variation that results from meiosis 5. Mendelian genetics and heredity patterns 6. Variations on Mendel’s principles – alternative inheritance patterns 7. Chromosomal basis of inheritance 8. Sex chromosomes and sex-linked genes iii. Big Idea #3 laboratory investigation 1. Cell Division: Mitosis and Meiosis – Students will first begin by modeling the process of mitosis using Pop-It beads. Students analyze cells using a prepared slide, comparing the number of cells in interphase to the number of mitotic cells. Percentages of each phase are calculated which correspond with the approximate length of each phase in the cell cycle. Data will be analyzed by performing a Chi-square analysis. In order to explore meiosis, students will examine Sordaria ascospores. They will calculate the percentage of crossing over that has occurred in these ascospores to determine the location of the gene for spore color. 7 VI. iv. Activities 1. Group activity investigating various incidences of cancer and what environmental conditions led to that particular type of cancer from National Institutes of Health: Cell Biology and Cancer. 2. Various Punnett square problems involving dihybrid crosses, probability predictions for crosses, alternative inheritance pattern crosses, and gene linkage involving calculation of recombination frequencies 3. Chi Square using M&M’s – Students are given the known percentages of a package of M&M’s from the packaging company. They then use the number of candies in the package to apply the null hypothesis concept and calculate Chi-Square calculations. UNIT 5: MAKING PROTEINS a. Protein Synthesis, Gene Regulation, and Biotechnology i. Readings in Life 1. Chapter 11 – DNA and its Role in Heredity 2. Chapter 12 – From DNA to Protein: Genotype to Phenotype 3. Chapter 14 – Eukaryotic Genome and its Expression 4. Chapter 16 – Recombinant DNA and Biotechnology 5. Chapter 17 – Genome Sequencing, Molecular Biology, and Medicine ii. Lecture Topics 1. Structure of DNA 2. DNA Replication 3. DNA to Protein: Transcription 4. DNA to Protein: Translation 5. Viral DNA 6. Gene Regulation in Prokaryotes vs. Gene Regulation in Eukaryotes 7. Gene Control in Embryonic Development 8. Restriction enzymes, Plasmids, and Transformation 9. DNA technology – gel electrophoresis iii. Big Idea #3 Laboratory Investigations 1. Transformation lab – Students will perform a transformation lab in which they will transform a bacterial cell to contain a plasmid for the resistance to ampicillin. They will calculate the transformation efficiency. Students will then plan a controlled experiment in which they make predictions about how to increase the transformation efficiency. The lab reports will include a discussion of the reasons the transformation efficiency was increased or decreased 8 2. Gel Electrophoresis lab – Students will receive 4 DNA samples labeled DNA marker strand, Suspect 1 DNA, Suspect 2 DNA, and Crime Scene DNA. After setting up the gels and electrophoresis apparatus, students will add the DNA to the appropriate wells, allow it to run, stain and destain the gels, and then analyze them to determine matches. After a match has been determined, students will use two selected strands (one with known base pair lengths) to predict the base pair lengths of the other strand. A logarithmic graph will be used to make these predictions. iv. Activities 1. Watson and Crick’s original article published in Nature on the structure of DNA is read and discussed as a class. 2. Role Play of Protein Synthesis – Students participate in a role play of the process of protein synthesis. Some students are a part of the process where other students describe what is happening in the process with each step. 3. Creation of paper recombinant DNA – from various sources- This activity is performed prior to the transformation lab in order to help students visualize how the restriction enzymes act on certain sequences of DNA, cut, and then ligase binds complementary sequences together. 4. Restriction map worksheet – obtained at an AP® workshop- Students are given various problems in which they have to sequence genes on prokaryotic chromosomes. They are given scenarios where they have to construct a restriction map from given base pair lengths or gel electrophoresis results. 9