Materials and Methods Generation of Aurka conditional allele Aurka genomic DNA was isolated from RPCI-22 129S6/SvEvTac Mouse BAC Library, using Aurora-A cDNA as a probe. From this BAC an 8 kb genomic fragment digested by XbaI (Fig. 1A) was subcloned and used to generate a conditional Aurora-A targeting vector. The targeting vector was designed such that exon 2, which contains the ATG start codon, was flanked with loxP sites. The organization of the targeting vector was as follows (Fig. 1A): a mc1-TK (thymidine kinase) for negative selection, the left arm consisting of a 1 kb SalI/PstI fragment contained within intron 1, loxP, Neo (neomycin resistance) for positive selection flanked by Frt sites, the middle arm consisting of a 1 kb PstI/BamHI fragment containing exon 2, the second loxP, and the right arm consisting of a 5.5 kb BamHI/XbaI fragment containing exon 3 through 6. ES cells were targeted as described (McMahon and Bradley, 1990). The targeting vector was electroporated into AB1 ES cells. These cells were then plated on mitomycin C treated feeder cells, and positively selected with G418 and negatively selected with gancyclovir. Identification of properly targeted ES cell clones and genotyping of mouse tail DNAs were done by Southern blotting of XbaI/KpnI digests using the 5’ and the 3’ probes. Chimeric mice from two heterozygous targeted ES cell clones were generated at the M. D. Anderson Genetically Engineered Mouse Facility. Mouse breeding The chimeric mice were crossed to C57B6 mice to produce heterozygous conditional neo (CN) mice. These mice were crossed to Rosa 26 flipper mice to remove the neomycin resistance gene to generate the Aurora-A conditional (C) mice. The null allele (-) was derived by crossing the CN and the C allele harboring mice to ZP3-Cre mice, in which case the floxed alleles are recombined in the Cre expressing germ cells of females. PCR Genotyping of mouse tail DNA PCR genotyping was done utilizing the primer sets listed in the supplementary table. Genotyping of embryos Heterozygous mouse breeding pairs were monitored daily for vaginal plugs (0.5 dpc of embryonic development). At 3.5 or 8.5 dpc, uterus was isolated from plugged females. For 3.5 dpc embryo genotyping, embryos were flushed with M10 media, then transferred into M15 media. Each embryo was lysed with lysis buffer (10 mM Tris pH 8.4, 50 mM KCl, 2 mM MgCl2, 0.45% NP-40, 0.45% Tween 20 and 180 g/ml Proteinase K) at 55oC for 5 hr and then Proteinase K was heat inactivated at 95°C for 10 min. 5 l of the DNA lysate were used for PCR. In vitro growth study of embryos 3.5 dpc embryos flushed with M10 media were transferred onto collagen coated culture dish (Becton Dickinson) containing ES cell media (DMEM, 15% FBS, 1% L-Glutamine, 1% Penicillin Streptomycin, 1 mM Sodium Pyruvate and 1×MEM non-essential amino acids), overlaid with oil. Embryos were photographed immediately (3.5 dpc) and after being incubated for one day (4.5 dpc), two days (5.5 dpc) and three days (6.5dpc) in 5% CO2 at 37°C by an Olympus 1X70 microscope using 20X objective. Genotyping of the embryos was done as described above. Immunofluorescence microscopy 3.5 dpc embryos were flushed with M10 media, and rinsed with PBS. To remove the zona pellucida, embryos were treated with Acid Tyrode’s, diffused with M15 media, and then rinsed with M2 media. Embryos were transferred onto poly-L-lysine coated cover slips (BD Biosciences), incubated with microtubule stabilization buffer (M buffer), overlaid with modified M buffer (Cutts et al, 1999), and fixed in cold methanol. Embryos blocked with PBS containing 3% BSA were immunostained with mouse monoclonal anti-Aurora-A antibody (1:100) and rabbit polyclonal anti--tubulin antibody (Abcam, 1:150). Following incubation with Alexa Fluor 555 goat anti-mouse (Invitrogen, 1:200), Alexa Fluor 488 goat anti-rabbit (Invitrogen, 1:200) and staining with 4,6-diamidino-2phenylindole (DAPI), the embryos were mounted with SlowFade Gold Antifade Reagent (Invitrogen) and analyzed by deconvolution microscopy (Nikon 2000U inverted microscope) using a 4X/1.3 N.A. objectives. Images were acquired and analyzed with a Photometric CoolSNAP CCD camera (Roper Scientific) and MetaMorph software (Molecular Devices). Deconvolution processing was performed using AutoDeBlur software (Molecular Devices). References: Cutts SM, Fowler KJ, Kile BT, Hii LL, O'Dowd RA, Hudson DF et al. (1999). Defective chromosome segregation, microtubule bundling and nuclear bridging in inner centromere protein gene (Incenp)-disrupted mice. Hum Mol Genet 8: 1145-1155. McMahon AP, Bradley A. (1990). The Wnt-1 (int-1) proto-oncogene is required for development of a large region of the mouse brain. Cell 62: 1073-1085.