Name __________________________________________________________ Test 1 BIO 304 Summer 2011 1 Name __________________________________________________________ Fill-in-the-blanks (2 pts. each). Write the letter corresponding to the word in the list on the right that best fits in the blank in each sentence. 1. If you crossed a Chlamydomonas strain with the genotype D E to one with the genotype d e, a tetrad that had the four meiotic products D E, D e, d E and d e would be called a ____ tetrad. 2. If you crossed a Chlamydomonas strain with the genotype D E to one with the genotype d e, a tetrad that had four meiotic products D e, D e, d E and d E would be the result of a ____ during meiosis I. 3. Before S phase of meiosis, each chromosome is a single ____. 4. The probability that a couple who are carriers for an autosomal recessive disorder have 3 affected and 4 unaffected children can be calculated using ____. 5. If a dominant trait shows reduced ____, then it is possible for an individual with a dominant allele to show the recessive phenotype. 6. _____ is the phenotypic ratio predicted for progeny of a dihybrid cross when the alleles of both genes show codominance. A B C D E F G H I J K L M N O P Q R S T U V W 1:2:1:2:4:2:1:2:1 9:3:3:1 annealing binomial probability bivalent chromatid denaturation dominant lethal expressivity four-strand double crossover nonparental ditype parental ditype penetrance product law pUC19 recessive lethal recombinant vector sex-limited synapse sum law tetratype three-strand double crossover two strand double crossover 7. In a PCR reaction, the temperature you chose to use for the ____ of the primer to the template will be based on the length and GC content of the primer. 8. If a ____ occurs between linked genes during prophase of meiosis I, then the gametes will be 50% parental and 50% recombinant. 9. If you ligated chromosomal restriction fragments into pUC19, transformed the ligation into E. coli, and plated the transformants on L+Amp+X-gal+IPTG medium, then white colonies would correspond to transformants that received _____. 10. If a dihybrid cross produces 2/3 progeny with the dominant trait and 1/3 progeny with the recessive trait, and all the dominant progeny are heterozygotes, then the dominant allele is said to be a _____ allele. 2 Name __________________________________________________________ Concept Map. Write a phrase that makes a complete sentence which accurately describes the relationship between the key terms at the corner of the box. There are 8 total phrases needed, and each phrase must be written to clearly correspond to the appropriate arrow on the box. If the arrow goes from “cables” to “bridges” then the phrase should read: (Cables) are components of some (Bridges). The reverse arrow could read (Bridges) sometimes contain or use (Cables). Be concise and accurate and you will earn 2 points for each arrow, with 2 points being provided for demonstrating a reasonable effort to answer all 8 arrows. dominance 9:3:3:1 alleles epistasis 3 Name __________________________________________________________ Problem 1. Two alternative restriction maps of a HindIII HindIII HindIII 3 kb 2 kb R1 region on the Drosophila melanogaster HindIII HindIII chromosome 3 are shown in the figure. The top R2 map shows the map of the chromosomes in a true-breeding (pure-breeding) strain that carries the recessive, X-linked, white allele. The bottom map shows the map of the chromosomes in a true breeding (pure-breeding) strain with wild-type, red eyes. Segregation of this region of chromosome 3 can be followed in crosses as a Restriction Fragment Length Polymorphism (RFLP). a) (8 Points) Indicate the eye and RLFP phenotype of the F1 and F2 of a cross between a whiteeyed female and a red eyed male. TIP: Name the RFLP alleles R1 and R2 as shown in the figure. F1: F2: male ladder parent 5 kb b) (2 Points) Fill in the phenotype for the RFLP locus in the F1 using the gel to the right.. 3 kb 2 kb 4 female parent F1 Name __________________________________________________________ B A Problem 2. The figure shows a developmental pathway Colorless Dark Light controlling pigment synthesis in a plant. The letters refer to two, autosomal genes controlling pigment synthesis, A and B. A and B are dominant, functional alleles. a and b are recessive, loss of function alleles. A pure-breeding colorless individual is crossed to a pure-breeding dark individual and produces all light-colored F1. Use the model above and this information to determine: a) the genotype of the parents b) the genotype and phenotype of the F1 c) the F2 phenotypes and their proportions 5 Name __________________________________________________________ Problem 3. white, yellow and echinus are X-linked genes in a new species of Drosophila. Flies with at least one w+ allele have red eyes whereas homozygous or hemizygous w- mutants have white eyes. Flies with at least one y+ allele have gray bodies whereas homozygous or hemizygous y- mutants have yellow bodies. Flies with at least one ec+ allele have normal shaped eyes whereas homozygous or hemizygous ec- mutants have echinus-shaped eyes. A white, echinus-eyed female was mated to a yellow-bodied male to produce an F1 generation. A female from this F1 was mated to a white, echinus, yellow male to produce an F2. The number and types of 10,000 total F2 are shown below. a) (8 Points) Use this information to draw a map of the X chromosome in this new Drosophila species that indicates the genetic distance between each pair of genes. b) (2 Pionts)determine the value for interference in this region. F2: white, yellow, echinus 980 wild type 1000 white, yellow 8 echinus 12 white 500 yellow, echinus 480 yellow, 3620 white, echinus 3400 6 Name __________________________________________________________ Problem 4. Four possible restriction maps of a chromosome are shown in the figure (map A, B, C, and D). a) (5 Points) Use the restriction digest results for EcoRI, BamHI, and HindIII to determine which map is correct. b) (3 Points) Fill in the expected results for a digest with both EcoRI and BamHI. c) (2 Points) Use the result of the EcoRI + SalI digest to draw the location of the SalI site on the correct map. EcoRI EcoRI + + BamHI BamHI HindIII SalI EcoRI EcoRI 15 kb BamHI HindIII 4 2 1 14 kb 13 kb EcoRI BamHI EcoRI 5 12 kb A B 11 kb 10 kb 9 kb EcoRI EcoRI HindIII 3 8 kb C 7 kb 6 kb BamHI 5 kb 4 kb 3 kb 2 kb 1 kb 7 EcoRI HindIII D