Acta Neuropathologica SUPPLEMENTARY INFOMRATION Pituitary Blastoma: a pathognomonic feature of germ-line DICER1 mutations AUTHORS: Leanne de Kock1,2, Nelly Sabbaghian2, François Plourde2, Archana Srivastava2, Evan Weber3, Dorothée Bouron-Dal Soglio4, Nancy Hamel3,5, Joon Hyuk Choi6, Sung-Hye Park7, Cheri L. Deal8, Megan Dishop9, Adam Esbenshade10, John F. Kuttesch11,28, Thomas S. Jacques12, Arie Perry13, Heinz Leichter14, Philippe Maeder15, Marie-Anne Brundler16,29, Justin Warner17, James Neal18, Margaret Zacharin19, Márta Korbonits20, Trevor Cole21, Heidi Traunecker22, Thomas W. McLean23, Fabio Rotondo24, Pierre Lepage25, Steffen Albrecht26, Eva Horvath24, Kalman Kovacs24, John R. Priest27 and William D. Foulkes1,2,3,5 Correspondence to: Dr. William D. Foulkes at the Department of Medical Genetics, The Lady Davis Institute, Segal Cancer Centre, Jewish General Hospital, 3755 Cote St. Catherine Road, Montreal, QC, Canada, H3T 1E2. Email: william.foulkes@mcgill.ca. Tel: (+1) 514-340-8222 Ext. 3213. 1 SUPPLEMENTARY INFOMRATION SUPPLEMENTARY TABLES Supplementary Table S1: DNA sample source, sequencing method and mutation summary Supplementary Table S2: Fluidigm Access Array Custom Design Primers Supplementary Table S3: Primer Sequences for loss of heterozygosity analysis Supplementary Table S4: DICER1 Mutations and Traces 2 SUPPLEMENTARY FIGURES SUPPLEMENTARY FIGURE S1: Case 3 3 Supplementary Figure S1: Case 3 Legend: A: Case 3: The proband (individual IV-3), a carrier of the c.2379T>G germ-line DICER1 mutation, was diagnosed with a PitB at the age of 9 months. Thirteen family members, including the proband, tested positively for the germ-line DICER1 mutation. Individuals shaded in black have known DICER1-related lesions. Individuals shaded in grey have other cancers not suspected to be related to DICER1 syndrome. Abbreviations: CN, cystic nephroma; MNG, multinodular goitre; PPB, pleuropulmonary blastoma; SLCT, Sertoli Leydig cell tumour. 4 SUPPLEMENTARY FIGURE S2: Case 4 Supplementary Figure S2: Case 4 Legend: The proband, individual III-1, was diagnosed with a PitB at the age of 18 months. Both the proband and her mother (individual II-2) were found to carry the c.3535_3538delTCTT DICER1 germ-line mutation. The maternal grandmother, individual I-2 died of leukaemia at the age of 33 years. Individuals I-3, I-4 and I-5 had hypothyroidism. 5 SUPPLEMENTARY FIGURE S3: Case 5 Supplementary Figure S3: Case 5 Legend: At the age of 13 months, the female proband (individual III-1) was diagnosed with a PitB. She was found to be a carrier of a de novo germ-line DICER1 mutation (c.1525C>T, p.(Glu1809Trp)). 6 SUPPLEMENTARY FIGURE S4: CASE 9 Supplementary Figure S4: Case 9 Legend: The female proband (individual III-2), a carrier of the c.2026C>T germ-line DICER1 mutation, was diagnosed with a PitB at 7 months of age. Additionally, individual I-2 had colon cancer and individual III-4 (a carrier), had a thyroid carcinoma. Individuals II-2 and II-4 were also found to be carriers of the segregating mutation. 7 SUPPLEMENTARY FIGURE S5: CASE 11 Supplementary Figure S5: Case 11 Legend: At 9 months of age, the female proband (individual III2) was diagnosed with a PitB. She was found to carry a c.1284delGA germ-line DICER1mutation. Both mother (individual II-2) and maternal grandmother (individual I-2, deceased) were found to be carriers of the same germ-line mutation and a second somatic DICER1 RNase IIIb mutation (c.5437G>C, p.(Glu1813Gln)) was identified with the Sertoli Leydig cell tumour (SLCT) harboured by the grandmother (diagnosed at 54 years). The grandmother also had a history of pulmonary bullae. The mother was reported to have had a thyroid nodule at 18 years of age and individual I-3 (deceased) had a brain carcinoma at 26 years. 8 SUPPLEMENTARY FIGURE S6: CASE 13 Supplementary Figure S6: Case 13 Legend: The 9-month-old female infant (individual IV-1) was diagnosed with a PitB. Individual I-3 had a throat carcinoma, leukaemia (AML) and Type 2 diabetes and individual III-4 (a half-brother of individual II-5) had a bladder carcinoma at 50 years of age. 9 SUPPLEMENTARY FIGURE S7: Supplementary Figure S7 Legend: Short tandem repeat (STR) marker genotyping performed on case 13 to identify loss of heterozygosity in the tumour. Alleles are highlighted to the left of each image: black is the conserved allele, red is the allele lost in the tumor. LOH is evident in the tumour at STR markers D14S1054 and D14S265. The reference used is hg19 obtained from the UCSC Genome Browser (http://genome.ucsc.edu/index.html). 10