Supplementary Information Effect of Gold Nanoparticles and Ciprofloxacin on Microbial Catabolism: A Community-based Approach †Kela P. Weber, ‡Elijah J. Petersen, †Sonja Bissegger, †Iris Koch, †Jun Zhang, †Kenneth J. Reimer, §Lars Rehmann, ||Robin M. Slawson, #Raymond L. Legge, ††, ‡‡Denis M. O’Carroll † Department of Chemistry and Chemical Engineering, Royal Military College of Canada, Kingston, Ontario, K7K 7B4, Canada ‡ National Institute of Standards and Technology, Material Measurement Laboratory, Gaithersburg, MD, USA § Department of Chemical and Biochemical Engineering, University of Western Ontario, London, Ontario, N6A 3K7, Canada || Department of Biology, Wilfrid Laurier University, Waterloo, ON, CANADA, N2L 3C5 # Department of Chemical Engineering, University of Waterloo, Waterloo, ON, CANADA, N2L 3G1 †† Department of Civil and Environmental Engineering, University of Western Ontario, London, Ontario, N6A 3K7, Canada ‡‡ Water Research Laboratory, School of Civil and Environmental Engineering, University of New South Wales, Manly Vale, NSW, 2093, Australia Four pages. S1.0 Dynamic Light Scattering Methodology Details and Results The phosphate buffer was filtered using 0.45 µm a disposable filter (Nalgene) and a syringe with a 0.2 µm nylon filter (Daigger) to remove dust. Additionally, all glassware was cleaned beforehand using pressurized air to remove dust particles. Because testing the samples at a nominal concentration of ~ 5 µg/mL (10:1 dilution of RM solution) did not yield sufficiently high counts, a concentration of ~ 10 µg/mL (5:1 dilution of RM solution) was used. Three hundred µL was added to glass cuvettes for the measurement. The samples were centrifuged at 15,558g (Hettich Mikro 120 Microcentrifuge) for 5 minutes to remove dust particles before measurements were taken at 20° C using a 90° scattering angle. Given the sensitivity of DLS measurements to larger particles and the small size of the particles being tested challenging the sensitivity of the DLS, centrifugation was necessary; in the report of investigation for the reference material, the samples were filtered through a 0.1 µm pore size aluminum oxide membrane for this reason. The initial value of (14.7 ± 5.5) nm is near the DLS reference size provided by NIST of (13.5 ± 0.1) nm (https://www-s.nist.gov/srmors/view_report.cfm?srm=8011); this value is close to those measured using transmission electron microscopy, scanning electron microscopy (SEM), atomic force microscopy, small-angle x-ray scattering, and differential mobility analysis in the NIST certificate of analysis. The reason that the DLS values are substantially larger than 9.9 nm (the core size for the AuNPs by SEM measurement) is that DLS measurements take into account surface coatings in addition to the particle core and provide the hydrodynamic size of AuNPs. The data was also analyzed using a special NICOMP program (Particle Sizing Systems (Santa Barbara, CA USA)) which takes into account the potential for multiple peaks. However, this program did not present uncertainty estimates for each size measurement. The average size for the largest (with regards to percentage of the total) peak was (15.7 ± 0.1) nm and (15.7 ± 1.2) nm after 0 and 24 h, respectively. However, the percentage that corresponded to this peak decreased from (94 ± 2) % to (78 ± 13) % indicating that agglomeration was occurring. S2.0 Inductively Coupled Plasma-Mass Spectrometry Methodology Details Gold standard solutions (1 mg/ml or 1000 mg/L Au(III) in HCl, as HAuCl4), were obtained from two different sources for the calibration curve (Fisher Scientific Canada) and for a quality control (QC) calibration check (SCP Science). For ICP-MS daily performance checks, a solution containing 10 μg/L Ba (barium), and 1 μg/L Be (beryllium), Mg (magnesium), Co (cobalt), Fe (iron), In (indium), Ce (cerium), Pb (lead), U (uranium) and Th (thorium) was made from a custom stock solution (Inorganic Ventures) in 2% HNO3 (v/v) (prepared from Optima grade concentrated HNO3 , Fisher Scientific Canada). The Bi (bismuth) solution used as the internal standard was obtained from SCP Science (Canada). Hydrochloric acid (HCl, 37%, trace metal grade), and nitric acid (HNO3, 70%, trace metal grade) were purchased from Fisher Scientific Canada and aqua regia consisted of 3:1 (v:v) of HCl: HNO3. The linear calibration curve ranged from 0.1 to 100 μg/L Au(III) in 2% aqua regia (v/v). A QC solution (18.97 μg/L Au(III) in 2% aqua regia) was measured every 12 samples to ensure the calibration remained valid throughout the run, and results were acceptable with recoveries (measured concentration with respect to the known concentration) between 96 and 110%. Measurements included correction to Bi internal standard to eliminate signal fluctuations from variations on sample matrix and measurement conditions. Torch position, nebulizer gas flow and lens voltage were optimized before analysis and operating parameters are summarized in Table S1. Table S1. ICP-MS operating conditions. Instrument Elan DRC II ICP-MS Nebulizer gas flow 0.99 L/min Auxiliary gas flow 1.275 L/min Plasma gas flow 15 L/min ICP radiofrequency power 1,400 W Sample uptake rate 20 rpm Analysis and detection modes Standard, peak hopping, pulse counting Lens voltage 8V Analog voltage -1,650 V Pulse voltage 750 V Sweeps/reading 50 Readings/replicate 1 Replicates 3 Dwell time 50 ms Integration time 5,000 ms Figure S1: Average well colour development (corrected absorbance at 590nm) data (84h), given varying ciprofloxacin dose, for the different guild groupings for an antibiotic resistant microbial community (mesocosm wetland 2 – MW2). Data points are the average of triplicate measurements and uncertainties indicate one standard deviation.