ORGANIC CHEMISTRY CHM 207 CHAPTER 1: INTRODUCTION TO ORGANIC CHEMISTRY NOR AKMALAZURA JANI SUBTOPICS • Characteristic features of organic compounds. • Electronegativity and chemical bonds. • Isomerism. • Reaction of organic compounds. ORGANIC CHEMISTRY • Organic chemistry: -The branch of chemistry that deals with carbons compounds. • Also contain element such as O, N, P, S and halogen (F, Cl, Br, I) • ‘Organic’ – derived from living organisms • Study of compounds extracted from living organisms and their natural products. • Examples: sugar, starch, urea, waxes, carbohydrates, fats and etc • Human are composed of organic molecules – proteins in skin, lipid in cell membranes, glycogen in livers and the DNA in the nuclei of cells. • Chemistry of carbon: - Two stable isotops (13C and 12C) - electron configuration: 1s2 2s2 2p2 - four valence electrons - can form more compounds than any other element - able to form single, double and triple carboncarbon bonds, and to link up with each other in chains and ring structures Characteristic features of organic compounds • Bonding hybridization theory i) sp hybrid orbitals - combine a s orbital and a p orbital on the same atom - hybrid orbitals give a bond angle of 180o - linear bonding arrangement - example: acetylene (contains carbon triple bond) - Bonding in Acetylene, C2H2 180o 0 lone pairs on central atom Cl Be Cl 2 atoms bonded to central atom • sp2 hybrid orbitals - when an s orbital combines with two p orbitals, it will formed three hybrid orbitals and oriented at 120o angles to each other. - called sp2 hybrid orbitals (composed of one s orbital and two p orbitals). - the 120o arrangement is called trigonal geometry. 121.7o 116.6o Ethylene, close to 120o • sp3 hybrid orbitals - when an s orbital combines with three p orbitals, it will formed four hybrid orbitals and oriented at 109.5o angles to each other. - called sp2 hybrid orbitals (composed of one s orbital and three p orbitals). - the arrangement is called tetrahedral. • Hydridization of other atoms: Nitrogen and oxygen - type of hybridization: sp3 - bond angle for N-H : 107.3o - bond angle for O-H : 104.5o Valence shell electron pair repulsion (VSEPR) model: Predict the geometry of the molecule from the electrostatic repulsions between the electron (bonding and nonbonding) pairs. Class AB2 # of atoms bonded to central atom 2 # lone pairs on central atom 0 Arrangement of electron pairs Molecular Geometry linear linear B A = central atom B = surrounding atom E = lone pair on A B VSEPR Class AB2 AB3 # of atoms bonded to central atom 2 3 # lone pairs on central atom Arrangement of electron pairs Molecular Geometry 0 linear linear 0 trigonal planar trigonal planar Boron trifluoride (BF3) VSEPR Class AB2 # of atoms bonded to central atom # lone pairs on central atom 2 0 linear linear trigonal planar trigonal planar AB3 3 0 AB4 4 0 Arrangement of electron pairs tetrahedral Molecular Geometry tetrahedral VSEPR Class AB2 # of atoms bonded to central atom # lone pairs on central atom 2 0 linear linear trigonal planar trigonal planar Arrangement of electron pairs Molecular Geometry AB3 3 0 AB4 4 0 tetrahedral tetrahedral 0 trigonal bipyramidal trigonal bipyramidal AB5 5 VSEPR # of atoms bonded to central atom # lone pairs on central atom AB2 2 0 linear linear AB3 3 0 trigonal planar trigonal planar AB4 4 0 tetrahedral tetrahedral trigonal bipyramidal octahedral Class Arrangement of electron pairs AB5 5 0 trigonal bipyramidal AB6 6 0 octahedral Molecular Geometry VSEPR Class # of atoms bonded to central atom # lone pairs on central atom Arrangement of electron pairs Molecular Geometry trigonal planar bent AB3 3 0 trigonal planar AB2E 2 1 trigonal planar VSEPR Class AB4 # of atoms # lone bonded to pairs on central atom central atom 4 0 Arrangement of electron pairs Molecular Geometry tetrahedral tetrahedral AB3E 3 1 tetrahedral trigonal pyramidal AB2E2 2 2 tetrahedral bent VSEPR Class AB5 # of atoms bonded to central atom # lone pairs on central atom 5 0 trigonal bipyramidal trigonal bipyramidal distorted tetrahedron T-shaped Arrangement of electron pairs AB4E 4 1 trigonal bipyramidal AB3E2 3 2 trigonal bipyramidal AB2E3 2 3 trigonal bipyramidal Molecular Geometry linear VSEPR # of atoms bonded to central atom # lone pairs on central atom AB6 6 0 octahedral octahedral AB5E 5 1 octahedral square pyramidal AB4E2 4 2 octahedral square planar Class Arrangement of electron pairs Molecular Geometry Class Molecular Geometry AB2 linear AB3 AB2E trigonal planar bent AB4 AB3E AB2E2 tetrahedral trigonal pyramidal bent AB5 AB4E AB3E2 AB2E3 trigonal bipyramidal distorted tetrahedron T-shaped linear AB6 AB5E AB4E2 octahedral square pyramidal square planar ELECTRONEGATIVITY AND CHEMICAL BONDS • Electronegativity: a measure of the force of an atom’s attraction of electrons that is shares in a chemical bond with another atom. • Electronegativity is used to estimate the degree of ionic or covalent character in a chemical bond. • A non polar covalent bond is one in which the difference in electronegativity between the bonded atoms is 0.4 or less. - example: bond between C and H is classified as nonpolar covalent because the difference in electronegativity between two atoms is 0.4 unit on the Pauling scale. • A polar covalent bond is one in which the difference in electronegativity between two atoms is between 0.5 and 1.8. - example: bond between H-Cl (electronegativity between two atoms is 0.9 unit) CH3 CH3 ethane nonpolar CH3 NH2 CH3 OH methylamine methanol increasing polarity CH3 Cl chloromethane H3CNH3+ Clmethylammonium chloride ionic e- poor electron poor region H d+ electron rich region e- rich H F d+ d- F d- cross arrow = indicate the direction of bond polarity The Electronegativities of Common Elements ISOMERISM • Isomers: organic compounds that have same molecular formula but different arrangements of atoms. • Isomerism: the existence of two or more organic compounds with the same molecular formula but different arrangements of atoms. • Two types of isomerism: i) constitutional isomerism ii)stereoisomerism CONSTITUTIONAL (STRUCTURAL) ISOMERISM • Molecules that have same molecular formula but have different structural formulae. • Subdivided into 3 different categories: i) Chain isomerism ii)Positional isomerism iii)Functional group isomerism Chain isomerism • Chain isomers are those which differ in the structure of their carbon chains, differ in the length of their straight chains or branch. • Example: - alkane with molecular formula C4H10 has 2 chain isomers CH3CH2CH2CH3 butane (straight chain) CH3CHCH3 CH3 2-methylpropane (branched chain) - alcohols with the formula C4H9OH CH3CH2CH2CH2OH butanol (straight chain) CH3CHCH2OH CH3 2-methyl-1-propanol (branched chain) • Possess the same functional group, belong to the same homologous series. • Different physical properties. • Similar chemical properties. Positional isomerism • Have the same carbon skeleton and belong to the same homologous series, but differ position of the functional group. • Similar chemical properties because have the same functional group. • Different physical properties. • Examples: i) bromoalkanes with the molecular formula C3H7Br H H H H C C C Br H H H 1-bromopropane (boiling point: 70.8oC) H H H H C C C H H BrH 2-bromopropane (boiling point: 59.4oC) ii) Alcohols with the molecular formula C3H7OH H H H H C C C OH H H H H H H H C C C H H OH H 1-propanol 2-propanol iii) Alkenes with the molecular formula C5H10 CH3CH2CH2CH 1-pentene CH2 CH3CH2CH CHCH3 2-pentene • Aromatic compounds. - If two bromine atoms replace two hydrogen atoms to form disubstituted benzene, three isomers can be formed. Br Br Br Br Br 1,2-dibromobenzene 1,3-dibromobenzene Br 1,4-dibromobenzene Functional Group Isomerism • Isomers which have the same molecular formula but contain different functional groups. • Same molecular formula but belong to different homologous series. • Different chemical and physical properties. Examples Types of compounds Alkene and cycloalkane Molecular formula Functional group isomers C5H10 CH3CH2CH2CH CH2 1-pentene Alcohol and ether C3H8O Aldehyde and ketone C3H6O Carboxylic acid and ester C3H6O2 CH3CH2CH2OH 1-propanol CH3CH2CHO propanal CH3CH2COOH propanoic acid cyclopentane CH3OCH2CH3 methoxyethane CH3COCH3 propanone CH3COOCH3 methyl ethanoate HCOOC2H5 ethyl methanoate STEREOISOMERISM • Isomers with same structural formula but they have different spatial arrangements of their atoms. • Divided into two categories: i) cis-trans isomerism ii)optical isomerism cis-trans (geometrical) isomerism • Occurs in compounds in which free rotation is prevented by the presence of a carbon-carbon double bond or a cyclic structure which hinders or obstructs the rotation of a C-C single bond in the ring. • Known as geometrical isomerism. • Same structural formula, differ only in how the atoms or groups are orientated in space. • Example: - alkenes: 2-butene exists has two cis-trans isomers. H3C CH3 C C H H cis-2-butene (bp: 4o) H CH3 C C H H 3C trans-2-butene (bp: 1o) (two methyl groups are on the (two methyl groups are on the same side of the double bond) opposite side of the double bond) cis-trans (geometrical) isomerism • Have same functional group, thus have same chemical properties. • Have different physical properties as a result of the different spatial arrangements of the groups. • For example: - boiling point of cis-2-butene is 3.7oC but boiling point of trans-2butene is 0.9oC. • cis isomers have higher bp compared to trans isomer due to more polarised nature. • trans isomer have higher melting points - more linear structure that enables them to form a more denselypacked crystalline structure. CH3 C C H CH3 H CH3 H C C H CH3 cis-2-butene trans-2-butene bp: 3.7oC bp: 0.9oC μ = 0.33 D μ=0D cis-trans (geometrical) isomerism • Cannot occur if one of the carbons atoms in the double bond or the ring structure has two identical atoms or groups. • Example: - 1,2-dichloroethene shows cis-trans isomerism but 1,1-dichloroethene and 1,1,2-trichloroethene do not show cis-trans isomerism. Cl Cl H Cl C C C C H H cis-1,2-dichloroethene H Cl trans-1,2-dichloroethene exhibit cis-trans isomerism H Cl C C Cl H 1,2-dichloroethene Cl Cl C C H Cl 1,1,2-trichloroethene do not exhibit cis-trans isomerism • Examples of cyclic compounds that show cis-trans isomerism: H H CH3 CH3 cis-1,4-dimethylcyclohexane H H CH3 CH3 cis-1,2-dimethylcyclohexane Cl Cl H CH3 cis-1,3-dichlorocyclohexane H trans-1,4-dimethylcyclohexane H CH3 CH3 H trans-1,2-dimethylcyclohexane H Cl Cl H H CH3 H trans-1,3-dichlorocyclohexane Optical isomerism • Optical activity is the ability of certain crystals or solutions of certain substances to rotate the plane of plane-polarised light. • The substances are said to be optically active. • Optical isomers: optically active substances which possess the same structural formula but differ in their effect on plane-polarised light. • Isomers which rotates the plane of polarisation to the right (in clockwise direction) – dextrorotatory isomer or the (+)isomer. • Isomer that rotates the plane of polarisation to left (anti-clockwise direction) – laevorotatory or the (-)isomer. Dextrorotatory (+) laevorotatory (-) CHIRALITY • Chiral: - molecule that have different mirror image (nonsuperimpose). - must have an enantiomers. • Achiral: - a molecule that do not have chiral carbon - identical with its mirror image - optically inactive - not chiral same compound different compounds HH HH Cl H H Cl Cl Cl Cl Cl H Cl Cl H cis-1,2-dichlorocyclopentane (achiral) trans-1,2-dichlorocyclopentane (chiral) CHIRALITY CENTRE AND ENANTIOMERS • An organic molecule will exhibit optical isomerism or optical activity if it contains at least one chiral carbon atom. • Chiral carbon atom or asymmetric carbon atom (C*): carbon atom attached to four different atoms or groups. • Enantiomers / optical isomers: - A molecule that contains an asymmetric carbon atom and have a mirror image that cannot be superimposed on it. - have same structural formula but different spatial arrangement of the atoms. - optically active. • Diastreoisomers: - stereoisomers that are not mirror image of each other. - include cis-trans isomers. mirror plane CH3 C* H C2H5 OH CH3 C2H5 C* HO H C* = chiral carbon optical isomerism of 2-butanol (enantiomers) Write the expanded formula for each of these molecules and mark the chiral carbon or stereogenic centre in each of the molecule with an asterisk (*): a) 2-bromopentane b) 1,2-dibromobutane c) 4-ethyl-4-methyloctane Isomerism (same molecular formula) Constitutional isomerism (different structural formula; different spatial arrangement of atoms) Chain isomerism Positional isomerism Stereoisomerism (same structural formula; different spatial arrangement of atoms) Functional group isomerism cis-trans isomerism Optical isomerism THREE-DIMENSION (3D) FORMULA H C Cl H H Cl Cl C H Cl The 3-dimensional line-wedge-dash structure and the expanded structural formula of dichloromethane (CH2Cl2) represents the covalent bond coming out of the plane of the paper represents the bond behind the plane of the paper represents the covalent bond lying in the plane of the paper RACEMATE • Racemate or racemic mixture: - an equimolar mixture (+) and (-) isomers. • Does not rotate the plane of polarised light (optically inactive). • Example: 50% (+)-gliseraldehyde + 50% (-)-gliseraldehyde = (±)-gliseraldehyde Reaction of Organic Compounds • Covalent bond cleavage - during the organic reaction, chemical bonds have to be broken in order that new compounds may be formed. - the breaking of chemical bonds is called fission. - When organic compounds react, their bonds can split up in the following ways: XY X XY Y XY X X X X X XY Y X X XY X X XY Y X X Y Y Y Y Y Y Y Y Y - Each atom retains one of the electrons present in the covalent bond. - known as homolytic fission / homolytic cleavage - either X or Y retains both electrons - known as heterolytic fission / heterolytic cleavage HOMOLYTIC FISSION (RADICAL CLEAVAGE) • Homolytic fission: two shared electrons of the covalent bond are split equally between the two atoms joined by the bond. • Also known as homolysis. • One electrons goes to X and the others goes to Y. • The resulting species is called free radicals. XY XY X Y Free radicals X Y • Examples of free radicals: i) hydrogen radical, H• ii)chlorine radical, Cl• iii)methyl radical, •CH3 or CH3• iv)ethyl radical, •CH3CH2 or CH3CH2• • Free radicals are reaction intermediates. • They are very reactive and many may only exist for a split second. • The movement of a single electron in homolytic fission is shown by a curved half-arrow. C CI C CI • Occurs in reactions which take place in the gas phase or in nonpolar solvents. • The reactions are often catalysed by sunlight, ultraviolet light or high temperatures. HETEROLYTIC FISSION (IONIC CLEAVAGE) • Heterolytic fission: the breaking of a covalent bond in which both electrons remain on one of the atoms. • Known as heterolysis. • Produces positive and negative ions. • The breaking of the bond (C-Y) can happen in 2 ways, depending on the electronegativities of the carbon atom and the atom Y. C C Y heterolysis cation C anion Y (Y is more electronegative than C) anion Y cation (C is more electronegative than Y) • Carbonium ion or carbocation: - an organic ion which contains a carbon atom with a positive charge (C+) - electrophiles (lewis acid) • Carbanion: - an organic ion which contains a carbon atom with negative charge (C-) - has a lone pair of electrons • Heterolytic fission is more common where a bond is already polar. • For example: H δδ+ H C Br H Bromomethane has a polar C-Br bond H Br H C H methy carbocation δ+ = low electron density δ- = high electron density THE EFFECT OF ALKYL GROUPS ON THE STABILITY OF FREE RADICALS, CARBOCATIONS AND CARBANIONS • Free radicals can be designated as primary (1o), secondary (2o) and tertiary (3o). • For example: CH3 H CH3 C CH3 H CH2 C H propyl radical (primary) CH3 1-methylethyl or isopropyl radical (secondary) CH3 C CH3 tert-butyl radical (tertiary) • Free radicals are stabilized by alkyl groups that donate to the trivalent carbon atom. H H CH methyl radical H R C H primary radical R R CH R R C R secondary tertiary radical radical stability increases • A secondary carbocation is more stable than primary carbocation due to the electron donating effect of alkyl groups. • The greater the number of the alkyl groups on the carbon atom that bears the positive charge, the greater its stability. H H CH R R C R H R CH R R CH primary carbocation secondary tertiary carbocation carbocation stability of the carbocation increases • The alkyl group decreases the stability of a carbanion. • The greater the number of the alkyl groups on the carbon atom that bears the negative charge, the less stable the carbanion. H H CH H R CH R R CH primary carbanion secondary carbanion R R C R tertiary carbanion stability of the carbanion decreases ELECTROPHILE AND NUCLEOPHILE • Reagents in organic reactions can be classified either electrophiles or nucleophiles depending on whether they attack regions of high electron density (δ-) or regions of low electron density (δ+). • regions of low electron density (δ+) also known as electrondeficient sites. • Electrophiles: - a species (ion or molecule) which attacks a negatively charged carbon atom by accepting an electron pair. - Lewis acid -positive ions or molecule that have an electron-deficient atom (δ+). - known as electrophilic reagents • Nucleophile: - a species (ion or molecule) that attacks a positively charged carbon atom by donating an electron pair to form a dative covalent bond. - known as nucleophilic reagents - Lewis bases - negative ions or molecules that have at least one lone pair of electrons. Examples of nucleophiles and electrophiles nucleophiles (donors of electron pairs) electrophiles (acceptors of electron pairs) OH, RO H+ (or H3O+), NO2+ (nitronium ion) CI, Br, I Cl2, Br2 C + (carbanion) C NH3, RNH2 H2O Reducing agents CN- (carbocation) RN2+ R-OH C C BF3 AlCl3 FeBr3, ZnCl2 Oxidising agents Cl+, Br+, I+ • Example: H CH3 N H nucleophile δ+ CH3CH2 Cl electrophile δ- H CH3 N CH2CH3 H Cl TYPES OF REACTIONS • • • • • Addition reactions with electrophilic reagents Addition reactions with nucleophilic reagents Substitution reactions with electrophilic reagents Substitution reactions with nucleophilic reagents Elimination reactions ADDITION REACTIONS • Addition reaction: a reaction in which an unsaturated molecule becomes saturated by the addition of a molecule across a multiple bond (C=C in alkenes, -C≡C- in alkynes, C=O in aldehydes and ketones) • Addition reactions to double bonds have these 3 characteristics: i) the π bond of the double bond is broken and two single bonds are formed ii) only one product is obtained at the end of the reaction iii) the product obtained is a saturated organic compound C C unsaturated X Y addition reaction C C X Y saturated Addition reactions • Addition reactions can be classified as: i) electrophilic addition reactions ii)nucleophilic addition reactions Electrophilic addition reactions 1) Addition reactions with electrophilic reagents. • Examples: i) Reaction of propene with bromine to give 1,2dibromopropane. -Bromine acts as the electrophile H CH3 C H CH propene δ+ δBr Br electrophile H H CH3 C C H Br Br 1,2-dibromopropane or C C alkene X X electrophile X = halides (Cl, Br or I) C X C X ii) Reaction of ethene with hydrogen bromide (HBr): H H H C C H ethene H Br H H C H H C H Br electrophile or C C alkene H X electrophile X = halides HX = HCl or HBr or HI C H C X 2) Addition reactions with nucleophilic reagents. • Examples: i) Aldehydes and ketones undergo nucleophilic addition hydrogen cyanide (HCN) to form cyanohydrins. H CH3 C O H CH3 C OH CN HCN ethanal (an aldehyde) nucleophile cyanohydrin Mechanism for formation of cyanohydrin Step 1: Cyanide addition O C R R' ketone or aldehyde C N Step 2: Protonation O R C R' C N intermediate H C N OH R C R' C N cyanohydrin SUBSTITUTION REACTIONS • A reaction in which one atom or group replaces another atom or group in a molecule. • Example: the conversion of an alcohol into haloalkane CH3CH2OH PCl5 CH3CH2Cl POCl3 • The hydroxyl group (-OH) in the alcohol molecule is replaced by the chlorine atom. • Three types of substitution reactions: i) electrophilic substitution reactions ii)nucleophilic substitution reactions iii)free radical substitution reactions HCl 1) Substitution reactions with electrophilic reagents • A reaction where electrophiles attack an aromatic ring and replace one of the hydrogen atoms on the ring in a reaction. H + E an electrophile E H+ • Aromatic compounds such as benzene (C6H6), methylbenzene (C6H5CH3), phenol (C6H5OH), and phenylamine (C6H5NH2) undergo electrophilic substitution with chlorine under suitable conditions. • For example: i) chlorination of benzene - benzene reacts with chlorine gas in the presence of FeCl3 (Lewis acid catalyst) to form chlorobenzene and hydrogen chloride. H Cl Cl2 FeCl3 benzene electrophile HCl chlorobenzene hydrogen chloride ii) bromination of benzene H Br Br2 FeBr3 benzene electrophile HBr bromobenzene hydrogen bromide iii) nitration of benzene NO2 H HNO3 H2SO4 H2O nitrobenzene + NO3 (nitronium ion) = electrophile 2) Substitution reactions with nucleophilic reagents - any reaction in which one nucleophile is substituted for another. - General equation : - Nu R R C X R nucleophile substitution R Nu C R R X- - Nu = nucleophile X- = leaving group - substitution take place on an sp3 hybridized carbon atom. • Examples: i) haloalkanes / alkyl halides undergo nucleophilic substitution with hot aqueous sodium hydroxide to form alcohols and halide ions. - hydroxide ion (OH-) acts as nucleophile - heterolytic fission of the C-Cl covalent bonds occurs. CH3CH2Cl OH ethyl chloride reflux CH3CH2OH ethanol Cl- CH3CH2OH alcohol X OH- (hydroxide ion) = nucleophile or CH3CH2X - OH reflux Alkyl halides OH- (hydroxide ion) = nucleophile - ii) reaction of alkyl halides with cyanide ion - R-X alkyl halide C N R-C N cyanide (nucleophile) - X nitrile Example: CH3CH2CH2I 1-iodopropane - C N cyanide (nucleophile) CH3CH2CH2CH2CN butanenitrile I- ELIMINATION REACTIONS • A small molecule is removed from a larger molecule to produce a double bond or a triple bond. • Reverse of addition reactions. • Examples: i) dehydration (removal of H2O) of alcohol to form alkene. C C H OH alcohol C C H2O alkene Example: H H H C C H H OH ethanol H H H C C H ethene H2O ii) dehydrohalogenation (removal of hydrogen and a halogen atom) of alkyl halide to form alkene. C C H X alkyl halide C C HX alkene HX = HCl or HBr or Hl Example: H H CH3 C C H H Cl chloropropane H H CH3 C C H propene HCl