Genetics – Major Concepts, Common Misconceptions, and Learning Activities1 Part I provides an outline of key concepts in genetics. Part II presents common misconceptions. Part III recommends an integrated sequence of learning activities to develop student understanding of the key concepts and counteract common misconceptions.2 Part IV suggests supplementary learning activities. Part I – Key Concepts Key Concepts from the Next Generation Science Standards (NGSS)3 Students will gain understanding of several Disciplinary Core Ideas: o LS1.A: Structure and Function – "All cells contain genetic information in the form of DNA molecules. Genes are regions in the DNA that contain the instructions that code for the formation of proteins." o LS1.B: Growth and Development of Organisms – "In multicellular organisms individual cells grow and then divide by a process called mitosis, thereby allowing the organism to grow. The organism begins as a single cell (fertilized egg) that divides successively to produce many cells, with each parent cell passing identical genetic material (two variants of each chromosome pair) to both daughter cells. Cellular division and differentiation produce and maintain a complex organism, composed of systems of tissues and organs that work together to meet the needs of the whole organism." o LS3.A: Inheritance of Traits – "Each chromosome consists of a single very long DNA molecule, and each gene on the chromosome is a particular segment of that DNA. The instructions for forming species' characteristics are carried in DNA." o LS3.B: Variation of Traits – “In sexual reproduction, meiosis can create new genetic combinations and thus more genetic variation. Although DNA replication is highly regulated and remarkably accurate, errors do occur and result in mutations, which are also a source of genetic variation.” For additional information about NGSS Performance Expectations, Crosscutting Concepts, and Science and Engineering Practices and how the recommended learning activities support these learning goals, see the Teacher Preparation Notes for each recommended learning activity and the summary tables at http://serendipstudio.org/exchange/bioactivities/NGSS. More Specific Key Concepts Genetics is primarily concerned with two questions: How do our genes influence our characteristics? How are genes transmitted from parents to offspring? This overview and the suggested learning activities will show how: understanding the functions of DNA and proteins provides the basis for understanding how genes influence an organism's characteristics (Key Concept 1 below) understanding meiosis and fertilization provides the basis for understanding how genes are transmitted from parents to offspring (Key Concepts 2 and 3 below). 1 By Dr. Ingrid Waldron, Department of Biology, University of Pennsylvania, 2019. These Teacher Notes are available at http://serendipstudio.org/exchange/bioactivities/GeneticsConcepts . 2 3 These learning activities are aligned with the Next Generation Science Standards, http://www.nextgenscience.org/ http://www.nextgenscience.org/sites/default/files/HS%20LS%20topics%20combined%206.13.13.pdf and http://www.nextgenscience.org/sites/default/files/Appendix%20G%20%20Crosscutting%20Concepts%20FINAL%20edited%204.10.13.pdf 1. Genes in DNA Proteins Characteristics Genes in DNA provide the information necessary to make proteins, and proteins carry out many biological functions and thus influence our characteristics. More specifically: nucleotide sequence in the DNA of a gene nucleotide sequence in messenger RNA (mRNA) transcription amino acid sequence in a protein translation structure and function of the protein (e.g. normal hemoglobin vs. sickle cell hemoglobin) person's characteristics or traits (e.g. normal health vs. sickle cell anemia)4 Different alleles (different versions of the same gene) code for different versions of a protein which can result in differences in phenotype (an organism's appearance or other observable characteristics). Differences in phenotype can also result from differences in gene expression and effects of the environment. A person is homozygous for a gene if both alleles for that gene are the same. A person is heterozygous if they have two different alleles for the gene. For some pairs of alleles, the phenotype of a heterozygous individual is the same as the phenotype of one of the two types of homozygous individual. The allele that results in the same phenotype for both a heterozygous individual and a homozygous individual is dominant. The other allele is recessive. In other cases, neither allele is completely dominant or completely recessive. In incomplete dominance, the phenotype of a heterozygous individual is halfway between the phenotypes of the two homozygous individuals. In codominance, both alleles affect the phenotype of the heterozygous individual. A single gene may influence more than one phenotypic characteristic. Many phenotypic characteristics are influenced by more than one gene. 2. Meiosis and Fertilization Inheritance The behavior of chromosomes during meiosis and fertilization provides the basis for understanding the inheritance of genes. As a result of meiosis, each egg receives one copy of each gene from the mother and each sperm receives one copy of each gene from the father. When the gametes unite in fertilization, the zygote that develops into the child receives one copy of each gene from the mother and another copy of each gene from the father. Repeated mitosis ensures that each cell in a child’s body has the same genes as the zygote. Because children get their genes from their parents, they tend to resemble their parents and their siblings. (Environmental influences also contribute to the similarity of parents and offspring.) However, meiosis results in genetically diverse sperm and eggs which, together with random fertilization, results in genetic diversity of the zygotes/children produced by the same mother and father. This can result in phenotypic diversity. 4 For information about the processes of transcription and translation, see pages 2-3 of http://serendipstudio.org/exchange/files/TranscriptionTranslationTN.pdf. 2 3. Punnett Squares Probabilistic Predictions of Inheritance The processes of meiosis and fertilization can be summarized in Punnett squares which can be used to predict the genotypes and phenotypes of offspring. Quantitative predictions from Punnett squares are accurate for large samples, but random variation in the genetic makeup of the sperm and egg that unite to form each zygote often results in substantial discrepancies between the Punnett square predictions and the outcomes observed in small samples such as individual families. Each fertilization event is independent of other fertilization events, so the genetic makeup of each child is independent of the genetic makeup of any siblings. Part II – Common Misconceptions5 Sometimes our teaching may inadvertently reinforce some of these misconceptions (especially b-e). The learning activities proposed in Part III are designed to counteract these misconceptions. a. Students often do not understand the distinctions between a chromosome, a gene and an allele. Similarly, students often do not understand the difference between a chromatid and a chromosome. b. Each trait is influenced by a single gene, and each gene influences only one trait (not recognizing how common polygenic traits and pleiotropy are). c. There are only two alleles for each gene. d. Genes are the sole determinants of traits (not recognizing environmental influences). e. Dominant traits are the most common traits (which is true for some genes, but not all). f. A person who doesn’t have a characteristic lacks the gene for this characteristic (not recognizing that the person has other alleles for this gene). g. All genetic conditions are inherited (not recognizing the important role of new mutations or mistakes in meiosis in causing some genetic conditions). h. All mutations are harmful (which is often true, but not always). i. Students often fail to recognize the probabilistic nature of Punnett square predictions and inheritance. Part III – Recommended Learning Activities The following integrated sequence of learning activities is recommended to help students develop a solid understanding of the key concepts. These learning activities will also help to counteract common misconceptions. The Teacher Preparation Notes for each of these activities explain how each activity is aligned with the Next Generation Science Standards (NGSS). This integrated sequence of learning activities begins with three activities to help students understand DNA structure and replication and the basic molecular biology of how genes influence characteristics. Some teachers may prefer to use only the first of these activities before beginning the discussion of mitosis, meiosis and fertilization and inheritance and then return to other aspects of basic molecular biology after completing the discussion of transmission genetics. Understanding the Functions of Proteins and DNA (NGSS) (http://serendipstudio.org/exchange/bioactivities/proteins ) This overview provides a sequence of learning activities to help students understand that proteins and DNA are not just abstract concepts in biology textbooks, but rather crucial components of our bodies that affect functions and characteristics that students are familiar with. Students learn about how proteins contribute to the digestion of food and to characteristics such as albinism, sickle cell anemia 5 These misconceptions are taken primarily from http://knowgenetics.org/common_misconceptions/ and https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2278104/ (especially tables 5 and 6). 3 and hemophilia. Then, students learn about the relationship between the genetic information in DNA and the different versions of these proteins. The discussion, web-based, and hands-on learning activities presented are appropriate for an introductory unit on biological molecules or as an introduction to a unit on molecular biology. DNA Structure, Function and Replication (NGSS) (http://serendipstudio.org/exchange/bioactivities/DNA) This analysis and discussion activity can be used to introduce your students to key concepts about DNA structure, function and replication or to review these topics. This activity includes hands-on modeling of DNA replication. If you prefer a hands-on activity in which students extract DNA, see “DNA” (NGSS) (http://serendipstudio.org/sci_edu/waldron/#dna). From Gene to Protein via Transcription and Translation (NGSS) (http://serendipstudio.org/exchange/bioactivities/trans) In this analysis and discussion activity, students learn (1) how genes influence characteristics such as albinism and sickle cell anemia and (2) how genes provide the instructions for making a protein via transcription and translation. To help students understand the processes of transcription and translation, this activity includes multiple figures, brief explanations, and questions, together with four recommended videos. This activity can be used to introduce students to transcription and translation or to reinforce and enhance student understanding. If you prefer a hands-on activity that uses simple paper models to simulate the molecular processes of transcription and translation, see “From Gene to Protein – Transcription and Translation” (http://serendipstudio.org/sci_edu/waldron/#trans). Mitosis and the Cell Cycle – How a Single Cell Develops into the Trillions of Cells in a Human Body (NGSS) (http://serendipstudio.org/exchange/waldron/mitosis) In this hands-on, minds-on activity students use model chromosomes and answer analysis and discussion questions to learn how the cell cycle produces genetically identical daughter cells. Students learn how DNA replication and mitosis ensure that each new cell gets a complete set of chromosomes with a complete set of genes. Students learn why each cell needs a complete set of genes and how genes influence phenotypic characteristics. Finally, students analyze exponential growth to understand how a single cell develops into the trillions of cells in a human body. This activity can be used as an introduction to mitosis or to reinforce understanding of mitosis. Meiosis and Fertilization – Understanding How Genes Are Inherited (NGSS) (http://serendipstudio.org/exchange/waldron/meiosis) In this hands-on, minds-on activity, students use model chromosomes and answer analysis and discussion questions to learn about the processes of meiosis and fertilization. As they model meiosis and fertilization, students follow the alleles of a human gene from the parents' body cells through gametes to zygotes; thus, students learn how a person inherits one copy of each gene from each of his/her parents. To learn how meiosis contributes to genetic variation, students analyze the results of crossing over and independent assortment. Students also compare and contrast meiosis and mitosis, and they learn how a mistake in meiosis can result in Down syndrome or death of an embryo. This activity can be used to introduce meiosis and fertilization or to review these processes. Genetics (NGSS) (http://serendipstudio.org/sci_edu/waldron/#genetics) The Genetics Student Handout begins with sections that help students to understand basic principles of genetics, including (1) how genotype influences phenotype via the effects of genes on protein structure and function and (2) how genes are transmitted from parents to offspring through the processes of 4 meiosis and fertilization. Then, a coin flip activity models the probabilistic nature of inheritance and Punnett square predictions. Additional concepts covered include polygenic inheritance, incomplete dominance, and how a new mutation can result in a genetic condition that was not inherited. The Genetics Supplement Student Handout includes (1) an alternative version of the introduction to genetic principles that does not require prior completion of our meiosis and fertilization activity; (2) an analysis of the genetics of sex determination that helps students understand the probabilistic nature of inheritance; and (3) analyses of the molecular basis of sickle cell anemia and sickle cell trait, including the multiple phenotypic effects of a single gene, plus a pedigree analysis. Part IV – Supplementary Activities6 Cell Differentiation and Epigenetics (NGSS) (http://serendipstudio.org/exchange/bioactivities/epigenetics) In this analysis and discussion activity, students answer minds-on questions as they learn about the differentiation of specialized cell types, including the role of changes in epigenetic control of gene expression during cell differentiation. Students also learn about environmental influences on epigenetic control of gene expression and the need for cell division and differentiation even in a fully grown adult. Soap Opera Genetics – Genetics to Resolve Family Arguments (NGSS) (http://serendipstudio.org/exchange/bioactivities/SoapOperaGenetics) This analysis and discussion activity contains three "soap opera" episodes that contribute to student understanding of the principles of inheritance and the relevance of genetics to everyday life. In the first episode, students explain the relevant biology to answer the probing questions of a skeptical father who wants to know how his baby could be albino when neither he nor his wife are albino. The second episode, "Were the babies switched?" covers the concepts of co-dominance, incomplete dominance, polygenic inheritance, and the combined effects of genes and the environment on phenotypic characteristics. In the third episode, students analyze sex-linked inheritance. Each episode can be used separately or with other episodes, depending on your teaching goals. Were the babies switched? – The Genetics of Blood Types (NGSS) (http://serendipstudio.org/sci_edu/waldron/#blood) In this minds-on, hands-on activity, students learn the genetics of the ABO blood type system. Students use simple chemicals to simulate blood type tests and then carry out genetic analyses to determine whether hospital staff accidentally switched two babies born on the same day. This activity reinforces student understanding of the fundamental concepts that genes code for proteins which influence an organism's characteristics and Punnett squares summarize how meiosis and fertilization result in inheritance. Students also learn about codominance and multiple alleles of a single gene. The first version of the Student Handout includes an introduction to the immunobiology of the ABO blood type system. The second version includes an analysis of the genetics of skin color in which students learn how fraternal twins could have very different skin colors, the concept of incomplete dominance, and how a single phenotypic characteristic can be influenced by multiple genes and the environment. The Molecular Biology of Mutations and Muscular Dystrophy (NGSS) (http://serendipstudio.org/exchange/bioactivities/mutation) In this analysis and discussion activity, students review basic molecular biology and learn how to use a codon wheel. Then, they analyze the molecular effects of different types of point mutations and deletion mutations and the reasons why deletion mutations generally have more severe effects. 6 Activities that are explicitly aligned with the Next Generation Science Standards are indicated by (NGSS). 5 Students use this background to analyze the different types of deletion mutations that cause the more severe Duchenne muscular dystrophy vs. the milder Becker muscular dystrophy. Genetic Engineering Challenge – How can scientists develop a type of rice that could prevent vitamin A deficiency? (NGSS) (http://serendipstudio.org/exchange/bioactivities/geneticengineer) This analysis and discussion activity begins with an introduction to vitamin A deficiency, rice seeds, and genetic engineering. Next, several questions challenge students to design a basic plan that could produce a genetically engineered rice plant that makes rice grains that contain pro-vitamin A. Subsequent information and questions guide students in developing an understanding of the basic techniques of genetic engineering. Students use fundamental molecular biology concepts as they think about how to solve a practical problem. This activity can be used to introduce students to genetic engineering or to reinforce basic understanding of genetic engineering. UV, Mutations, and DNA Repair (NGSS) (http://serendipstudio.org/sci_edu/waldron/#uvmutations) Students learn about the effects of UV light, mutations and DNA repair on the survival of prokaryotes and the risk of skin cancer. In the first experiment, students evaluate the effects of different durations of UV exposure on survival and population growth of Haloferax volcanii. This experiment also tests for photorepair of DNA damage. Students design the second experiment, which evaluates the effectiveness of sunscreen. In addition, students answer analysis and discussion questions that promote their understanding of molecular biology, cancer, and the interpretation of experimental results. Molecular Biology: Major Concepts and Learning Activities (NGSS) (http://serendipstudio.org/exchange/bioactivities/MolBio) This overview reviews key concepts and learning activities to help students understand how genes influence our traits by molecular processes. Topics covered include basic understanding of the important role of proteins and DNA; DNA structure, function and replication; the molecular biology of how genes influence traits, including transcription and translation; and the molecular biology of mutations. To help students understand the relevance of these molecular processes, the suggested learning activities link alleles of specific genes to human characteristics such as albinism, sickle cell anemia and muscular dystrophy. Suggested activities include hands-on laboratory and simulation activities, Web-based simulations, discussion activities and a vocabulary review game. DNA from the Beginning – An Animated Primer of 75 Experiments That Made Modern Genetics (http://www.dnaftb.org/) This online resource includes sections on classical genetics, molecules of genetics, and genetic organization and control. These provide an excellent introduction to a broader range of genetics concepts. Each concept and the related research evidence are explained with an animation, a video, and an engaging online problem. Several computer simulations can be used to help students learn and understand basic concepts of genetics. In Virtual Genetics Lab (available at http://vgl.umb.edu/) students develop explanatory models of genetic phenomena and test them. Biologica Web Labs include Dragon Genetics where students investigate the relationship between genotype and phenotype and Mendel's Peas where students learn the basic principles of meiosis, fertilization and inheritance (available at http://biologica.concord.org/webtest1/web_labs.htm ). 6 Cootie Genetics (available at http://biotech.bio5.org/cooties, with a helpful overview in The American Biology Teacher 76 (3): 189-193, 2014) In this hands-on, inquiry-based activity students investigate how traits are inherited. This activity is suggested as an introduction before learning the Mendelian laws of inheritance. Dragon Genetics – Understanding Inheritance (http://serendipstudio.org/sci_edu/waldron/#dragon2) In this simulation activity students mimic the processes of meiosis and fertilization to investigate the inheritance of multiple genes and then use their understanding of concepts such as dominant/recessive alleles, incomplete dominance, sex-linked inheritance, and epistasis to interpret the results of the simulation. This activity can be used as a culminating activity after you have introduced classical genetics, or it can serve as a formative assessment to identify any areas of confusion that require additional clarification. Should states repeal their laws banning first cousin marriages? -- Effects of first cousin marriage on health risks for their children (http://serendipstudio.org/exchange/bioactivities/GeneticsFirstCousins) This minds-on discussion/worksheet activity challenges students to analyze which types of genetic conditions will be more common among children of first cousin marriage and to use evidence concerning the magnitude of observed health effects to evaluate whether laws banning first cousin marriage in 25 states should be repealed. Genetics Jeopardy Review Game (http://serendipstudio.org/exchange/bioactivities/GeneticsJeopardy) 7