The Organic Chemistry of Enzyme-Catalyzed Reactions Chapter 4 Monooxygenation Monooxygenation Table 4.1. Typical reactions catalyzed by monooxygenases R1 R2 C H R2 C R3 Ar R1 R1 H R3 C OH R3 R2 Ar OH R1 R1 C C R2 R4 R1 N OH N H R2 O O n R S S O R2 R2 n+1 :OH R1 2 R1 R1 O CH R2 R1 NH2 C NH2 B+ H O R2 R1 R3 C R2 + NH + 4 C O R4 Internal Monooxygenase Flavin-dependent Hydroxylases Reaction catalyzed by lactate oxidase from Mycobacteria HO CH3 C COOH + O2 E•FMN CH3COOH + CO2 + H2O H 4.1 Scheme 4.1 No external reducing agent required One Turnover Experiment (enzyme concentration in excess over substrate) The lactate oxidase reaction under anaerobic conditions FMN HO CH3 C FMNH2 COOH O CH3C COOH 4.2 H Acting like an oxidase Scheme 4.2 Reaction of Reduced Lactate Oxidase with Pyruvate and Oxygen E•FMNH2 + H3C 14 C COO- + O2 E•FMN + CH314COO- + H2O + CO2 O Scheme 4.3 If O2 is added first, then [14C]pyruvate, pyruvate is unchanged and H2O2 is formed. Therefore, pyruvate is an intermediate. Model study: CH3CCOOH + H2O2 O CH3COOH + CO2 + H2O Possible Mechanisms for Lactate Oxidase B: CH3 FMNH- FMN H C COOH CH3 OH C CH3 COOH R N COO- C NH O N H like DAAO O via a mechanism such as shown in Scheme 3.33 18O 2 R N N H B: NH O- O H 18O B+ CH3 - H218O R N N O a 18O - CH3C 18OH H O NH N H 18O O 4.5 N O - CO2 N O + via a mechanism such as shown in Schemes 3.43 or 3.44 OH R N H N O B+ CH3 C O b b electrophilic substrate C O- COOB: O C NH N H O flavin 18O 4.3 18O a H hydroperoxide acts as a nucleophile 4.4 FMN H -FMN B+ a b 18OH 18O + CO2 + CH3C O- CH3C C O O 4.6 Scheme 4.4 O b H3C C O COO- 18 18 O O : H2 18O 18O H Enzyme bound :B External Monooxygenases NAD(P)H reduction of flavin O2 activation R N N O NAD(P)H NAD(P)+ R N H N NH N O NH N H O O2 Scheme 4.5 O H2O2 Activated O2 is probably in the form of flavin hydroperoxide Nucleophilic Substrates Mechanism proposed for flavin-dependent hydroxylases Substrate E Substrate NADH E FAD FAD Substrate FADHE NADH NAD+ stopped-flow spectroscopic evidence for boxed intermediates flavin hydroperoxide acts as electrophile NAD+ R N N N H O O OH H N O H+ NH N H B+ R N O NH O2 N H O O O NH O OH -OOC -OOC H _ N see Scheme 3.33 O O OH electrophilic OOC aromatic substitution R N :B :B HO R N N NH N H O OH OH H O + OH O -OOC -OOC H B B: - H2O FAD Scheme 4.6 Hammett Study p-hydroxybenzoate hydroxylase X R N N NH N 4.8 O O log Vmax for hydroxylation vs pKa linear free energy relationship (Electron deficient mechanism) = -0.5 Consistent with electrophilic aromatic substitution Electrophilic Substrates Reaction catalyzed by bacterial luciferase RCHO FMN, O2 RCOOH + h NADH long-chain aldehydes (electrophilic substrates) Scheme 4.7 Nucleophilic Mechanism for Bacterial Luciferase R N N O on warming R N O O O NH N H :B H N B H H OH O O OH h R R N -H2O N FMN H B: O NH N Scheme 4.8 O NH N H :B O O H O H B isolated by cryoenzymology R electrophilic substrates (-30 C in mixed aqueous-organic media) * R N O - RCOOH NH N H N O OH detected spectrophotometrically However, with 8-substituted FMN analogues rate increases with decreasing one electron oxidation potentials of analogues Chemically Initiated Electron Exchange Luminescence (CIEEL) Mechanism for Bacterial Luciferase R N N N N H O B H O O B OH H R O O -H+ R H R OH C R NH O O H O C OH O R N N N H O O H -H2O OH FMN O Scheme 4.9 R OH O NH : : NH N H SET R N O Alternative One-electron Mechanism via a Dioxirane Dioxirane mechanism for bacterial luciferase R N N R N O N R N O N R N O rate NH N H O O O NH N H :B H SET O O B H O H H O N H O H O O O determining step N H O H O O O R R NH R H N O NH O H :B R h R N -H2O N FMN H B: kx/kh vs. p for 8-substituted flavins = -4 (facilitated by e- donation) N O O N H O H O O NH N * R N O NH OH R O Scheme 4.10 Inconsistent with Baeyer-Villiger mechanism ( values +0.2 to 0.6) Baeyer-Villiger Oxidation of Ketones O O O R R' + Ar C O O O R C O Scheme 4.11 R' RO O R' + ArCOO- Ar O Migratory aptitude - more e- donating group migrates (in the case above, R) Ketone Monooxygenases - an Example of a Baeyer-Villiger Oxidation Reaction catalyzed by cyclohexane oxygenase Scheme 4.12 O O 18 + NADPH + 18O 2 enzyme FAD O + H218O C4a-FAD hydroperoxide intermediate detected Other Reactions Catalyzed by Cyclohexanone Oxygenase O Me Ph Ph O Me O RCHO R = alkyl Scheme 4.13 RCOOH same migratory aptitudes as nonenzymatic reaction Cyclohexane Oxygenase Proceeds with Retention of Configuration (like nonenzymatic) O O H D O H D Scheme 4.14 Migratory Aptitude of Cyclohexanone Oxygenase-catalyzed Reaction O O O O O Scheme 4.15 Same migratory aptitude as nonenzymatic (3° > 2° > 1° > Me) O D D D D 4.9 no loss of D (like nonenzymatic reaction) Baeyer-Villiger-type Mechanism Proposed for Cyclohexanone Oxygenase R N N R N O NH N H O O O O N O O H H B O OH B: O electrophilic substrate Scheme 4.16 O NH N O O :B N -H2O NH N H H R N O O FAD Reaction of Cyclohexanone Oxygenase with Boranes O B(OMe)2 O B OMe OMe FAD O B OMe OMe OH hydrolysis same as nonenzymatic reaction Scheme 4.17 Reactions Catalyzed by Ketone Monooxygenase O R1 R1 O R2 4.10 O O R2 R2 R1 + 4.12 4.11 when R1 = R2 = Me R1 = H; R2 = Me O 1 1 : : 20 1 (same as nonenzymatic reaction) Scheme 4.18 Reactions Catalyzed by the Ketone Monooxygenase from A. calcoaceticus O R1 O R2 R1 O A. calcoaceticus R2 R2 H H 1S 4.10 O O 5R R1 + (1S,5R) R1 = H, R2 = CH3 (1S,5S) H 1R 5S 4.14 4.13 R1 = R2 = H H (1R,5S) >95% ee (1R,5S) >95% ee racemate Scheme 4.19 Reactions Catalyzed by the Ketone Monooxygenase from P. putida O R1 O R2 R2 O P. putida R1 R1 H H 1R 4.10 O O 5S R2 + (1R,5S) R1 = H, R2 = CH3 (1R,5R) H 1S 5R 4.16 4.15 R1 = R2 = H H 50% ee (1S,5R) >95% ee (1S,5R) >95% ee racemate Scheme 4.20 Pterin-dependent Monooxygenases aromatic hydroxylation pteridine ring N N N N 4.17 Tetrahydrobiopterin H N HO N NH2 H NH N H H3C H OH O 4.18 • Fe2+ also required for activity • Only a few enzymes require tetrahydrobiopterin • Important in biosynthesis of dopa, norepinephrine, epinephrine, and serotonin • Reactions similar to flavoenzymes Comparison of the Dihydrobiopterin and Tetrahydrobiopterin with Oxidized Flavin and Reduced Flavin R N N R N O NH N HO N NH N OH NH2 H N pteridine reductase (NADPH) R N O reduced flavin O 4.19 NH2 NH N H N dihydropteridine reductase (NADPH) R N H O 4.20 H N R Scheme 4.21 O NH N H O oxidized flavin N H N N H + NH2 H N NH O 4.21a N NH2 NH O 4.21b Reaction Catalyzed by Phenylalanine Hydroxylase X COO- X NH3+ + 18O 2 + H4-pterin X = 2H, 3H, Cl, Br, alkyl Phe hydroxylase H18O NIH shift [1,2] migration COONH3+ + H218O + H2-pterin Scheme 4.22 Similar to flavin hydroxylases except 2H washed out with flavoenzymes Possible Intermediate H N R N H N + NH2 NH O O O H 4.22 Mechanism of the Reaction Catalyzed by Tetrahydrobiopterin-dependent Monooxygenases R H N + NH2 NH N H H N + NH2 N H H2-pterin + 18O 2 see Scheme 3.33 R O B+ N H H H218O 18O + : H N H18O NH R X 18O R X O 4.23 18O H : R X H18O R nucleophilic substrate X B: H X H18O Scheme 4.23 R H18O NIH shift X R discussed with hemedependent enzymes Evidence for Arene Oxide Intermediate Reaction of dihydrophenylalanine with phenylalanine hydroxylase COO- Phe hydroxylase NH3+ 4.24 Scheme 4.24 COOO 4.25 NH3+ Arene Oxide Mechanism Proposed for Tetrahydrobiopterin-dependent Monooxygenases H 2H COO- Phe hydroxylase NH3+ 2H O COO- 2H COO- O COO- HO 2H NH3+ NH3+ O H Scheme 4.25 H Tyr NH3+ HO COO- 2H 2H COO- NH3+ NH3+ m-Tyr Incubation with [4-2H]Phe should favor formation of m-Tyr (isotope effect), and [3,5-2H2]Phe should favor Tyr, but they do not. Therefore, not an arene oxide intermediate Cationic Mechanism Proposed for Tetrahydrobiopterin-dependent Monooxygenases Fe COO- HO Y COO- X NH3+ O Phe COO- hydroxylase NH3+ as X is larger X X NH3+ HO COONH3+ Y O H X HO COO- COO- X NH3+ m-Tyr Scheme 4.26 NH3+ The larger the size of X, the more m-Tyr product R COOH NH2 = -5 (cation-like TS‡) Alternative Species H N R N N H O O H N NH2+ NH R O N H N NH2+ NH OH O O Fe4+ Fe2+ 4.25b 4.25a These species could account for alkyl hydroxylation products (heme chemistry), e.g. with H3C COOH NH2 hydroxylation here Heme-Dependent Monooxygenases Heme N N FeIII N N COOH COOH 4.26 Cytochrome P450s (>500 different isozymes) require NAD(P)H and O2 Protection from xenobiotics Reactions Catalyzed by Heme-dependent Monooxygenases Substrate Alkane Product Alcohol Alkene Epoxide Arene Arenol or arene oxide R2NH, R 2O, R 2S RNH 2, ROH, RSH + RCHO R3N, R 2S + + R3N-O, R 2S-O RCH 2X RCHO + HX RCH 2OH RCHO RCHO RCOOH Molecular Oxygen Activation by Hemedependent Monooxygenases (requires NADPH) In P450cam Thr-252 low-spin state H H FeIII N N N R-H N FeIII S FeIII more readily accepts e- N FMNH N N N N FeIII N S FMN NAD(P)H :O: N N N FeV N S S 4.33d 4.33c B O R-H O O FMN N FeIII N N N S S 4.30 R-O-H R-H : : O N FeIV N N O2 FeII FADH FAD 4.28 N FMN S N H O R-H R-H N N N 4.27 FMN R-H O N high-spin state NAD(P)+ 4.31 4.29 cytochrome P450 reductase B OH :O: N N N FeIV N 4.33b calculations favor this structure means isolated and characterized R-H :O: N S H N N FeIII N S 4.33a N N -H2O N O FeIII N N S 4.32 Scheme 4.27 Alkane Hydroxylation Two-step radical mechanism with oxygen rebound for alkane oxygenation by hemedependent monooxygenases 3° > 2° > 1° R R H :O: N N FeIV C N N OH R' R'' N N FeIV N C R' R'' N N oxygen rebound N N N FeIII S S S 4.33b 4.34 4.28 R HO C R' R'' retention of configuration Scheme 4.28 Intermolecular isotope effect < 2 Intramolecular isotope effect > 11 (suggests C-H cleavage is not the rate-determining step) C-H cleavage during catalysis Products from the Reaction of all Exo2,3,5,6-tetradeuterionorbornane with the CYP2B4 Isozyme of Cytochrome P450 D OH D D D D D D 4.36 CYP2B4 4.35 D Scheme 4.29 D 4.37 D 4.38 OH D H H D D OH D D D D D 4.39 Scrambling of stereochemistry supports 2-step radical mechanism OH Radical Clocks - detection of radical intermediates Radical clock approach for determination of reaction rates in radical rearrangement reactions substrate H substrate kOH substrate OH kr known rearranged substrate kOH = kr (substrate-OH / rearranged substrate-OH) rearranged substrate OH Scheme 4.30 The rate of hydroxylation can be calculated (lifetime of radical intermediate) Example of Radical Clock Cytochrome P450-catalyzed monooxygenation of a cyclopropane analogue kOH H :O: N IV N Fe N N S HO a OH kr N N FeIV N S N Scheme 4.31 OH b From kr = 2 109 s-1 and the ratio of a/b, can calculate kOH = 2.4 1011 s-1 Cytochrome P450-catalyzed Oxidation of Trans-1-methyl-2-phenylcyclopropane FeIV O H a HO FeIV OH a kOH 4.40 4.42 4.41 b 3 x 1011 s-1 kr FeIV OH OH 4.44 OH 4.43 Scheme 4.32 Perdeuteration (CD3) gives increased pathway b called metabolic switching Evidence against a True Radical Intermediate Another ultrafast radical clock reaction catalyzed by cytochrome P450 H H H b OH kOH FeIV O a 4.45 3 1011 s-1 Scheme 4.33 kr b OH very little kOH has to be faster than the decomposition of a TS‡ (6 1012 s-1); therefore propose carbocation after oxidation step A Hypersensitive Radical Probe Substrate to Differentiate a Radical from a Cation Intermediate Generated by Cytochrome P450 Scheme 4.34 CH2 CH3 O a Ph O 4.46 Ph O O HO HO Ph 4.47 Ph 4.48 b +CH2 Ph O 4.49 Ph O HO- Ph -tert-butanol OH O Ph Ph H H O 4.50 O 4.51 based on nonenzymatic reactions With CYP2B1 - mostly unrearranged, but small amount of both 4.48 and 4.51; therefore radical lifetime is 70 fs A Concerted, but Nonsynchronous, Mechanism Proposed for Cytochrome P450 H H R R H R 70 fs H R H R O O O O O Fe(IV) Fe Fe Fe Fe(III) Scheme 4.35 General conclusion: More than one oxidizing species involving more than one pathway with multiple highenergy heme complexes (radical and cation) Alkene Epoxidation Two-step radical mechanism with oxygen rebound for alkene oxygenation by hemedependent monooxygenases R R' R O :O: N FeIV N R' N N S N N FeIV N N N S 4.52 lifetime? Scheme 4.36 "oxygen rebound" N N R R' N FeIII S O Evidence for Short-lived Radical Cytochrome P450-catalyzed epoxidation of trans-1-phenyl-2-vinylcyclopropane O P450 Ph Ph 4.55 4.56 only O Ph N FeIV N N S Scheme 4.37 N cyclopropyl/carbinyl radical rearrangement not detected Arene Hydroxylation Isolation of first arene oxide Cytochrome P450-catalyzed formation of an arene oxide O P450 4.57 Scheme 4.38 Is it an intermediate or side product? Evidence for a Cyclohexadienone Intermediate A common intermediate in the oxygenation of naphthalene 2H O H O 2H H either H OH 2H (H) O H2 Scheme 4.39 4.58 same product and 2H incorporation from both isomers Should have observed 1- and 2hydroxynaphthalene because of an isotope effect Concerted (pathway a) and Stepwise (pathway b) Mechanisms for the Potential Conversion of an Arene Oxide to a Cyclohexadienone H O H H H a concerted b O O H H H stepwise O H Scheme 4.40 Evidence against concerted: 1) no deuterium isotope effect 2) Hammett plot shows large - (carbocation intermediate) Isotope Effect and Hammett Studies Indicate either Radical or Cation (or both) Intermediates, but not Arene Oxide Mechanism proposed for heme-dependent oxygenation of aromatic compounds a D D R a :O: :O: N FeIV N D R N N N N S b FeIV N R :O: reasonable electron transfer N N N S FeIII N N S unfavorable a 4.59a 4.59b NIH shift oxygen b rebound c favorable N O D R D R N N N FeIII H O S Electrophilic addition when R is o/p directing, get mostly p product when R is m-directing, get m and p products HO R D Scheme 4.41 Sulfur Oxygenation Electron transfer mechanism proposed for heme-dependent oxygenation of sulfides N FeIV N :O: .. .. :O: :O: N S S S N N N S FeIV N S R' R R' R R' R N N oxygen rebound N N N FeIII S X Scheme 4.42 S CH3 Linear free energy relationship: log kcat vs. one-electron oxidation potential as well as + N-Dealkylation Electron transfer mechanism proposed for heme-dependent oxygenation of tertiary amines R R N H H 4.60 N N .. :O: R'' FeIV N N S N N FeIV N S R R'' R' N :O: R' R R' N R' N R'' R'' 4.61 H H .. : OH N N N R N FeIV N oxygen rebound N R' H+ R'' S : HO: H 4.62 R' Scheme 4.43 R"CHO + R N H With primary and secondary amines hydrogen atom abstraction mechanism favored (see next slide) O-Dealkylation Hydrogen atom abstraction mechanism proposed for heme-dependent oxygenation of ethers R R O H R' O H .. : OH :O: N N FeIV N N N FeIV N S R H N H+ R' O oxygen rebound H HO: : S N R' N N N N FeIII S Scheme 4.44 R'CHO + ROH Not electron transfer mechanism-- oxidation potential for oxygen is too high C-C Bond Cleavage Reaction catalyzed by aromatase O O 19 CH3 3 O2 + HCO2H 3 NADPH O HO 4.63 androstenedione Scheme 4.45 4.64 estrone Fate of the Atoms during Aromatase-catalyzed Conversion of Androstenedione to Estrone also a substrate O CH3 C H HR HS H O H B O 4.63 NADPH +H+ -H2 H O 4.65 H -H2 2 NADPH +H+ H H O H D 2 A O H O O 4.66 4.67 also a substrate O2 NADPH +H+ O Scheme 4.46 H2O + HC OH + HO 4.64 First two oxygenation steps proceed by normal heme hydroxylation mechanism Three Possible Mechanisms for the Last Step in the Aromatase-catalyzed Oxygenation of Androstenedione heme peroxide Fe+3 O O O O O Fe+3 O OH O Fe+3 O H OH Fe+3 Fe+3 OH - HCOOH (1) O HO O O 4.64 like Fl-OO- addition to aldehydes Fe+4 O O Fe+4 OH H O O (2) 4.64 HO + Fe+4 OH C H Fe3+ + HCOOH HO O Fe+4 O Fe+4 O O O Fe+4 O O Fe+4 O H H CH O 4.64 + Fe+4 OH (3) O O Scheme 4.47 O HO Fe3+ + HCOOH CH Evidence for Heme Peroxide Mechanism Oxidation of pregnenolone, catalyzed by an isozyme of cytochrome P450 (P45017) H3C 21 retained O H H 17 HD 16 HO OH HD 17 O2 16 NADPH HO + H3CCOOH HO HO 4.68 4.69 Scheme 4.48 FeIV-O• would have abstracted a C21 CH3 hydrogen or a C16 or C17 H Hydrogen Atom Abstraction Mechanism, Using a Heme Iron Oxo Species, for the P45017-catalyzed Oxygenation of Pregnenolone H3C H2C O H FeIV O FeIV OH HD 17 H H HD 17 16 HD 17 16 HO HO O 16 HO HO + CH2=C=O HO HO 2H O 2 4.70 FeIV OH Scheme 4.49 4.71 H2C2HCOO2H FeIII retained H OH HD 17 16 HO HO In 2H2O, ketene would give H2C2HCOO2H; no 2H found in CH3 group of acetate, therefore not FeIV-O• Evidence for a Nucleophilic Mechanism, Using Heme Peroxy Anion Followed by a Radical Decomposition of the Heme Peroxide, for the P45017-catalyzed Oxygenation of Pregnenolone H H3C B O H3C OH O H O 17 H3C OH O O FeIII O-FeIII O FeIII O OH Scheme 4.50 CH3COOH O FeIII FeIII +H+ Mutation of Thr-302 (T302A) in P450 2B4 (needed for formation of iron oxo species) decreased hydroxylation activity, but increased deacylation (nucleophilic) activity H FeIII O OH O 302T FeIII O OH2 FeIV O Further Evidence for Heme Peroxide Nucleophilic mechanism, using heme peroxy anion followed by a Baeyer-Villiger rearrangement, for the lanosterol 14methyl demethylase-catalyzed oxygenation of lanosterol C8H15 C8H15 2 O2 14 2 NADPH C HO HO CH3 O C O H+ H O H O HO FeIII FeIII OO 4.72 Baeyer-Villiger rearrangement C8H15 C8H15 no O2 /NADPH - HCO2H - H2O HO Scheme 4.51 H 4.74 H O O HO 4.73 –O FeIII H isolated, also a substrate Nucleophilic Mechanism, Using Heme Peroxy Anion, Followed by a Radical Decomposition of the Heme Peroxide, for the Lanosterol 14-Methyl Demethylase-catalyzed Oxygenation of Lanosterol Would Not Give the Baeyer-Villiger Product C8H15 C8H15 2 O2 2 NADPH 14 C HO CH3 O H+ C HO H O H O HO FeIII OO -HCOOH C H HO 4.74 Scheme 4.52 C8H15 C8H15 -FeIII-OH HO O FeIII 4.72 C8H15 H HO O FeIII H O O H O FeIII No formate ester formed H O O O O 4.75 Synthesized to test Baeyer-Villiger mechanism with aromatase - no estrone Maybe aromatase and P45017 have different mechanisms from that of lanosterol 14-methyl demethylase Model Studies on the Mechanism of Aromatase O OTHP OTHP H2O2 gives aromatase product + HCO2H TBDMSO TBDMSO 4.76 O OTHP O H2O2 no estrone O O 4.77 Scheme 4.53 OTHP O Revised Aromatase Mechanism Mechanism proposed for aromatase initiated by dienol formation O O O O FeIIIO O O OH FeIIIO OH O O FeIIIOO H B B O H HO HO HO 4.78 -HCOOH O Ha HO Scheme 4.54 FeIIIO -FeIIIOHb O Hb Ha HO 4.79 Nonheme Iron Oxygenation Methane monooxygenases Glu243 O binuclear iron cluster Glu114 COO O H2 O OOC FeIII His147 N Glu209 FeIII His246 O O H O N N N Glu144 4.80 CH4 CH3OH Binuclear Ferric Cluster of Methane Monooxygenase 2 NADPH H O FeIII FeIII 4.81 2 NADP+ H H O FeII 2 FeII O FeIII * FeIII H O FeIV FeIV 4.82 4.84a 4.83a +2H+ -H2 Scheme 4.55 H O FeIII soluble methane monooxygenase 4.83b H FeIII O FeIV FeIV 4.84b XAS and Mössbauer spectroscopy support 4.83a, not 4.83b Studies with the hypersensitive cyclopropane probe (4.46, Scheme 4.34) and methylcubane indicate a cation, not radical, intermediate Therefore mechanism like P450 Copper-dependent Oxygenation Reaction catalyzed by dopamine -monooxygenase from ascorbic acid + O2 HO NH2 HO H 2e2H+ HO + H2O NH2 HO 4.85 OH 4.86 Scheme 4.56 Optimal activity with 2 CuII per subunit one CuII catalyzes e- transfer from ascorbate one CuII catalyzes oxygen insertion into substrate Mechanism Proposed for Dopamine -Monooxygenase CuII CuII CuII O O O O H O H H2O H H Ar NH3+ Ar CuII CuII CuII Ar O 4.88 4.87 OH NH3+ Ar NH3+ H O O HO NH3+ +H+ Ar O HO H NH3+ Ar O NH3+ Scheme 4.57 Hammett plot = -1.5 fits better to than +, suggesting a radical with a polar TS‡