Chapter 3 Cell Structure BIOLOGY: Today and Tomorrow, 4e starr evers starr 3.1 Food For Thought Bacteria in our intestines make vitamins and keep us healthy – other bacteria make toxins that can contaminate foods and even kill us Example: Each year, about 265,000 people in the United States become infected with toxin–producing E. coli Toxin-producing bacteria 3.2 What, Exactly, Is a Cell? Cell theory is the fundamental theory of biology Cell theory All organisms consist of one or more cells The cell is the smallest unit of life Each new cell arises from another cell A cell passes hereditary information to its offspring Components of All Cells Plasma membrane Surrounds the cell and controls which substances move in and out (selectively permeable) Proteins embedded in a lipid bilayer or attached to one of its surfaces carry out membrane functions Cytoplasm Semifluid substance enclosed by cell’s plasma membrane Metabolic functions Components of All Cells Organelle Structure that carries out a specialized metabolic function inside a cell Membrane-enclosed organelles compartmentalize tasks such as building, modifying, and storing substances All cells start out life with DNA Eukaryotic cells have a nucleus that contains DNA Cells cytoplasm A) A bacterial cell. DNA plasma membrane Cells DNA nucleus cytoplasm B) A eukaryotic (plant) cell. Only eukaryotic cells have a nucleus. plasma membrane Surface-to-Volume Ratio Cells must be small to efficiently exchange materials with their environment Surface-to-volume ratio limits cell size and influences cell shape Surface-to-volume ratio Relationship in which the volume of an object increases with the cube of the diameter, but the surface areas increases with the square Surface-to-Volume Ratio Diameter (cm) 2 3 6 Surface area (cm2) 12.6 28.2 113 Volume (cm3) 4.2 14.1 113 Surface-to-volume ratio 3:1 2:1 1:1 How Do We See Cells? No one knew cells existed until microscopes were invented Different types of microscopes use light or electrons to reveal different details of cells: Light microscope (phase contrast) Light microscope (reflected light) Fluorescence microscope Transmission electron microscope Scanning electron microscope Common Units of Length Relative Sizes electron microscopes small molecules lipids carbohydrates proteins 0.1 nm viruses molecules of life 1 nm mitochondria, chloroplasts DNA 10 nm 100 nm 1 µm most bacteria Relative Sizes light microscopes mitochondria, chloroplasts 1 µm most bacteria most eukaryotic cells 10 µm 100 µm Relative Sizes human eye (no microscope) frog eggs 100 µm 1 mm largest organisms small animals 1 cm 10 cm 1m 10 m 100 m Same Organism, Different Microscopes A) Phase-contrast light microscopes yield high-contrast images of transparent specimens. Dark areas have taken up dye. Same Organism, Different Microscopes B) Reflected light microscopes capture light reflected from the surface of specimens. Same Organism, Different Microscopes C) This fluorescence micrograph shows fluorescent light emitted by chlorophyll molecules in the cells. Same Organism, Different Microscopes D) Transmission electron micrographs reveal fantastically detailed images of internal structures. Same Organism, Different Microscopes E) Scanning electron micrographs show surface details. SEMs may be artificially colored to highlight specific details. 3.4 The Structure of Cell Membranes A cell membrane is a mosaic of proteins and lipids (mainly phospholipids) that functions as a selectively permeable barrier that separates an internal environment from an external one Fluid mosaic model A cell membrane can be considered a two-dimensional fluid of mixed composition Phospholipids phosphate group hydrophilic head two hydrophobic tails A) Phospholipids are the most abundant component of eukaryotic cell membranes. Each phospholipid molecule has a hydrophilic head and two hydrophobic tails. Cell Membrane Structure one layer of lipids one layer of lipids B) In a watery fluid, phospholipids spontaneously line up into two layers: the hydrophobic tails cluster together, and the hydrophilic heads face outward, toward the fluid. This lipid bilayer forms the framework of all cell membranes. Many types of proteins intermingle among the lipids—a few that are typical of plasma membranes are shown opposite. Membrane Proteins Proteins associated with a membrane carry out most membrane functions Adhesion proteins help cells stick together Recognition proteins tag cells as “self” Receptor proteins bind to a particular substance outside the cell Transport proteins passively or actively assist specific ions or molecules across a membrane Membrane Proteins C) Recognition proteins such as this MHC molecule tag a cell as belonging to one’s own body. D) Receptor proteins bind substances outside of the cell. This one is a B cell receptor. B cell receptors help the body eliminate toxins and infectious agents such as bacteria. E) Transport proteins bind to molecules on one side of the membrane, and release them on the other side. This one transports glucose. F) This transport protein, an ATP synthase, makes ATP when hydrogen ions flow through its interior. Extracellular Fluid Lipid Bilayer Cytoplasm 3.4 Introducing Prokaryotic Cells Domains Bacteria and Archaea make up the prokaryotes Prokaryotes are the smallest and most metabolically diverse forms of life Prokaryotes inhabit nearly all regions of the biosphere – many archaeans are adapted to extreme environments Prokaryotes are single-celled organisms with no nucleus, but many have a cell wall and one or more flagella or pili Prokaryote Diversity: Bacteria A) Protein filaments, or pili, anchor bacterial cells to one another and to surfaces. Here, Salmonella typhimurium cells (red ) use their pili to invade human cells. B) Ball-shaped Nostoc cells are a type of freshwater photosynthetic bacteria. The cells in each strand stick together in a sheath of their own jellylike secretions. Prokaryote Diversity: Archaea C) The square archaea Haloquadratum walsbyi thrives in brine pools saltier than soy sauce. Gas-filled organelles (white structures) buoy these highly motile cells, which can aggregate into flat sheets reminiscent of tile floors. D) Ferroglobus placidus prefers superheated water spewing from the ocean floor. The durable composition of archaeal lipid bilayers (note the gridlike texture) keeps their membranes intact at extreme heat and pH. Prokaryote Body Plan The cytoplasm contains ribosomes, a circular DNA molecule in a nucleoid region, and may contain additional genes as plasmids Ribosome Organelle of protein synthesis Prokaryote Body Plan Cell wall Semirigid but permeable structure that surrounds the plasma membrane of some cells Consists of peptides and polysaccharides (in bacteria) or proteins (in archaeans) In some bacteria, a sticky capsule of polysaccharides surrounds the cell wall Prokaryote Body Plan Surface extensions allow certain actions Pili Protein filaments used to help cells cling to or move across surfaces, or for plasmid transfer Flagella Long, slender cellular structures used for mobility 1 cytoplasm, with ribosomes 2 DNA in nucleoid 3 plasma membrane 4 cell wall 5 capsule 6 pilus Prokaryote Body Plan 7 flagellum Biofilms Biofilms are shared living arrangements among bacteria and other microbial organisms that provide various advantages to the community Biofilm Community of different types of microorganisms living within a shared mass of slime A biofilm: dental plaque 3.5 A Peek Inside a Eukaryotic Cell Protists, fungi, plants, and animals are eukaryotes All eukaryotic cells start life with a nucleus, ribosomes, organelles of the endomembrane system (including endoplasmic reticulum, vesicles, Golgi bodies), mitochondria, and other organelles The Nucleus Pores, receptors, and transport proteins in the nuclear envelope control the movement of molecules into and out of the nucleus Nuclear envelope A double membrane that constitutes the outer boundary of the nucleus Nucleus of a cell nuclear envelope mitochondrion DNA in nuclear rough nucleus pore ER The Endomembrane System The endomembrane system includes rough and smooth endoplasmic reticulum, vesicles, and Golgi bodies Endomembrane system Series of interacting organelles between the nucleus and plasma membrane Makes and modifies lipids and proteins Recycles molecules and particles such as worn-out cell parts, and inactivates toxins The Endomembrane System Endoplasmic reticulum (ER) A continuous system of sacs and tubes that is an extension of the nuclear envelope Rough ER is studded with ribosomes (for protein production) Smooth ER has no ribosomes The Endomembrane System Vesicle Small, membrane-enclosed, saclike organelle Stores, transports, or degrades its contents Vacuole A fluid-filled organelle that isolates or disposes of wastes, debris, or toxic materials Lysosome Vesicle with enzymes for intracellular digestion The Endomembrane System Peroxisome Enzyme-filled vesicle that breaks down amino acids, fatty acids, and toxic substances Golgi body Organelle that modifies polypeptides and lipids Sorts and packages the finished products into transport vesicles Bacteria-Like Organelles: Mitochondria and Chloroplasts Mitochondria and chloroplasts have their own DNA – they resemble bacteria and may have evolved by endosymbiosis Mitochondrion Double-membraned organelle that produces ATP Chloroplast Organelle of photosynthesis Mitochondrion outer membrane outer compartment inner compartment inner membrane Chloroplast two outer membranes stroma inner membrane The Cytoskeleton Cytoskeleton Dynamic network of protein filaments that support, organize, and move eukaryotic cells and their internal structures The cytoskeleton interacts with accessory proteins, such as motor proteins Cytoskeletal Elements Microtubules Cytoskeletal elements involved in movement Hollow filaments of tubulin subunits Microfilaments Reinforcing cytoskeletal elements Fibers of actin subunits Intermediate filaments Elements that lock cells and tissues together Cytoskeletal Elements Motor Proteins Motor proteins are the basis of movement – they interact with microfilaments in pseudopods or microtubules in cilia and eukaryotic flagella Motor proteins Energy-using proteins that interact with cytoskeletal elements to move cells parts or the whole cell Example: Motor protein moves a vesicle along a microtubule Motor Protein Cilia Cilia Short, hairlike structures that project from the plasma membrane of some eukaryotic cells Coordinated beating stirs fluid, propels motile cells Moved by organized arrays of microtubules Example: clears particles from airways Flagella Eukaryotic flagella whip back and forth to propel cells such as sperm through fluid Pseudopods Temporary protrusion that helps some eukaryotic cells move and engulf prey Moved by motor proteins attached to microfilaments that drag plasma membrane Example: amoebas Components of an Animal Cell 3D ANIMATION: Tour of an Animal Cell ANIMATION: Eukaryotic evolution (formerly "endosymbiont theory") 3.6 Cell Surface Specializations Extracellular matrix (ECM) Complex mixture of substances secreted by cells Supports cells and tissues Functions in cell signaling Cuticle Type of ECM secreted by cells at a body surface Found in plants and arthropods Cell wall ECM that protects, supports, and imparts shape Plant ECM cuticle outer cell of leaf photosynthetic cell inside leaf Animal Cell Junctions Cell junctions Connect a cell to another cell or to ECM Tight junction Array of fibrous proteins that joins epithelial cells and prevents fluids from leaking between them Adhering junction Anchors cells to each other or to extracellular matrix Gap junction Channel across plasma membranes of adjoining cells Animal Cell Junctions tight junctions gap junction basement membrane Tight Junctions Around Kidney Cells adhering junction Cell Junctions in Plants In plants, plasmodesmata connect the cytoplasms of adjoining cells Plasmodesmata Open channels that extend across the primary walls of adjoining cells Allow materials such as water, nutrients, and signaling molecules to flow through 3.7 The Nature of Life Six properties characterize living things as different from nonliving things: 1. Make and use organic molecules of life 2. Consist of one or more cells 3. Self-sustaining biological processes such as metabolism 4. Change over their lifetime (develop, mature, age) 5. Use DNA as hereditary material when they reproduce 6. Have the collective capacity to change over successive generations Life 3.8 Food For Thought (revisited) Some think the safest way to protect consumers from food poisoning is by sterilizing food to kill toxic bacteria Example: Recalled, contaminated ground beef is typically sterilized, then processed into ready-to-eat products Digging Into Data: Organelles and Cystic Fibrosis