Atomic Structure, Molecular Structure & Bonding

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Introduction

&

Atomic Structure, Molecular

Structure and Bonding

Organic Chemistry: Introduction

What Is Chemistry?

Chemistry Is The Study Of Matter & The Changes It Undergoes

Two Main “Branches” of Chemistry

Organic

Chemistry

Term Coined by Berzelius ~ 1807

Matter Derived From Living Things

Study of Carbon Compounds (C,H,N,O)

Inorganic

Chemistry

Matter Derived From Nonliving Things

Vast Majority of the Periodic Table

2

Influence of Organic Chemistry

Organic Chemistry Is Important to Medicine: Ancient and Modern

Plant Extracts as Medicines…Active Ingredients are Organic Compounds

Prescription Drugs….Prepared by “Synthetic Chemists”

Organic Chemistry and Dyes:

1 st Solid Link of Industry and Research

$$ Derived From Research

Organic Chemistry and Materials Development:

Synthetic Fibers….Nylon

Synthetic Rubber….Neoprene

Chemistry of Polymers (Plastics)

3

Organic Chemistry and You?

Redox Reactions

Alcohols

Aldehydes

Ketones

Alkanes/alkenes

Ethers

Carboxylic acids

Concentration

Redox Reactions

Spectrometry

4

In this unit, we will review…

1. Atomic Structure

2. Lewis Dot Structures and Formal Charge

3. Ionic and Covalent Bonds

4. Electronegativity and Polarity

5. Molecular Geometry

6. Multiple Bonds

5

Modern Atomic Theory

Atoms have an internal structure consisting of one or more subatomic particles: proton

positive charge mass = 1.673 x 10

-27

kg neutron

no charge mass = 1.675 x 10

-27

kg electron

negative charge mass = 9.109 x 10

-31

kg

6

1

Most of the mass of an atom is concentrated in the

nucleus, which contains one or more positively charged protons and neutrons with no electrical charge.

proton

1

neutron

7

One or more negatively charged electrons are in constant motion outside the nucleus.

What is the overall electrical charge if the number of electrons equals the number of protons?

1

8

Valence and Core Electrons

Electrons contained in the outermost shell are called

________electrons.

All other electrons are called ______ electrons. eeeee-

How many valence electrons does this atom have? Core electrons? Which number matters more?

1

9

How many valence electrons (ve-’s) does carbon have? Calcium? What element is depicted in the image on the right?

10

1

Chemical Bonding

Chemical bonds are the forces that hold atoms together in compounds. We use Lewis Dot structures to represent these atoms and compounds.

C O C O

2

11

Drawing Lewis Dot Structures

1. Count total ve-’s available

2. Draw a Lewis sketch

– H is never central; C is often central

3. Draw in electrons to fulfill octet and duet rules

– C “likes” 8 electrons; H “likes” 2 electrons

4. Count ve-’s and compare to #2

5. If too many e-’s, make a double bond

6. Calculate formal charge (FC) to double check structure

– No or low FCs (e.g. +1) more likely than large FCs (e.g.

+2)

12

2

Example

NH

3

2

13

Formal Charge

Formal charge = ve-’s – (lone pairs + bonds)

In a neutral molecule, the sum of the FCs = zero. For an ion, the sum of the FCs = the charge of the ion.

2

14

Formal Charge –the easy way!

1. Circle the atom of interest.

2. Count the electrons inside the circle. If the circle

“breaks” a bond, only count one electron of the bond.

3. Take the ve-’s for the atom (its group number) and subtract #2.

FC of oxygen= 6 – (6) = 0

O C O

FC of carbon= 4 – (4) = 0

2

15

Resonance Structures

Resonance structures result when more than one valid Lewis dot structure can be drawn for one molecule.

– The positions of the nuclei can’t change (C, H, etc.)

– The positions of multiple bonds or lone pairs can move

– Low FCs are still favored

2

16

Carbon

C

Nitrogen

N

Oxygen

O

Halogens

X

C N O

C

C

Four bonds

No lone pairs

N

Three bonds

One lone pair

Two bonds

Two lone pairs

One bond

Three lone pairs

17

2

C rb

C

C

N itro n

N

N

N

N

N

O y n H lo s

O

X

O

O

2

18

Ionic versus Covalent

Bonds formed by the transfer of electrons from one atom to another are __________.

Example:

Sodium chloride (NaCl)

Na  Na + + e -

Cl + e  Cl __

Na + Cl  NaCl

+ + + +

_ _ _

+

_

+

_

+

_

+

+ + + +

19

3

Bonds formed by the sharing of electrons between two atoms are __________.

Example:

Glucose (C

6

H

12

O

6

)

3

20

Polar Covalent Bonds

Polar bonds are bonds between atoms created by sharing electrons unevenly.

4

H F

 

F F

Uneven sharing is the result of electron “greedy” atoms (i.e. more electronegative atoms).

21

Electronegativity

Electronegativity is a measure of the tendency of an atom to attract a bonding pair of electrons.

4

Polar Covalent Molecules

A polar molecule is a molecule that is electrically asymmetrical, resulting in charges at two points. The molecule is said to have a molecular dipole or dipole moment.

4

O

H H

O

H

C

H

23

Polar Covalent Molecules

Not all molecules that contain polar bonds will be polar molecules!

4

OCO

24

Molecular Geometry

Common geometries:

5

25

Acetone

C

3

H

6

O

Is acetone ionic or covalent?

What its geometry?

26

PQ

 Atomic orbitals (AOs)are the probability distribution about one atomic nucleus

(found using wave functions ψ)

 AOs relate to quantum numbers

(n, l, m l

, m s

)

 Each AO can have, at most, two e-

(Pauli Exclusion Principle)

 AOs are filled with e-’s from the lowest energy to the highest

(Aufbau Principle)

 The electron configuration with the highest number of unpaired spin is more stable

(Hund’s rule)

27

5

Atom

Boron

Electronic

Structure

1s

2

2s

2

2p

1

Electronic

Configuration

3 p

3 s

2 p

2 s

1 s

Lewis Dot

Structure

5

B

Phosphorus [Ne] 3s

2

3p

3

3 p

3 s

2 p

2 s

1 s

P

28

Scandium

5

29

Carbon

2s

1s

30

2p

Hybridized Orbitals

5

31

Hybridized Orbitals

When carbon double bonds, the 2s, 2p x and 2p carbon form three sp 2 hybrid orbitals. y orbitals on

The three hybrid orbitals form the points of a triangle.

C

A trigonal planar atom has sp 2 hybridization.

32

H

Double Bonds

H

C C

H H

The three sp2 hybrid orbitals of carbon and 1s orbitals of hydrogen make up the σ-framework of ethene.

33

6

Double Bonds

When the double bond is formed between the two carbons of ethene, a different type of bond is needed

(a π bond). This bond is formed with the remaining

2p z orbitals and is higher energy than the σ bonds.

6

34

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