ESC471H1 Engineering Science Capstone Design Optical Tweezers Team Proposal Date October 1st, 2010 Group Members Maryam Badakhshi Shannon O’Keefe Laura Poloni Hasmita Singh Instructors Professor Foster Professor Nogami Table of Contents Date ............................................................................................................................................................... 0 Group Members ............................................................................................................................................ 0 Instructors ..................................................................................................................................................... 0 1. Executive Summary ................................................................................................................................... 3 2. Background and Issues.............................................................................................................................. 3 3. Requirements, Criteria and Constraints.................................................................................................... 4 3.1 – Requirements of Proposed Solution ................................................................................................ 4 3.1.1 Laser Safety .................................................................................................................................. 4 3.2 – Criteria and Constraints for Proposed Solution ............................................................................... 5 3.2.1 Technical Constraints ................................................................................................................... 5 3.2.2 Experimental Constraints and Criteria ......................................................................................... 5 4. SURVEY OF EXISTING SOLUTIONS ............................................................................................................. 8 4.1 – Laser Safety Solutions ...................................................................................................................... 8 4.1.1 Engineering Controls .................................................................................................................... 8 4.1.2 Administrative Controls ................................................................................................................... 8 5. PROPOSED SOLUTION ............................................................................................................................... 9 5.1 – Laser Safety of Optical Tweezers System ......................................................................................... 9 5.1.1 – Protection of Laser: Enclosing the Fiber Optic Wire ................................................................. 9 5.1.2 – Safety of Users from Laser: Enclosing the open-beam region ................................................ 10 5.1.2.3 –Potential Solution #3 ............................................................................................................. 12 5.2 – Laboratory Experiment: Determination of Trap Stiffness.............................................................. 15 5.2.1 – Deliverables ............................................................................................................................. 15 6. PROJECT SCHEDULE ................................................................................................................................ 16 7. CONCLUSION ........................................................................................................................................... 16 8. REFERENCES ............................................................................................................................................ 17 APPENDIX A – Technical Components of Optical Tweezer System ............................................................ 18 APPENDIX B – Existing Experiments for Optical Tweezer System .............................................................. 21 APPENDIX C – Team Qualifications ............................................................................................................. 25 Relevant Educational Experience............................................................................................................ 25 Relevant Industry Experience ................................................................................................................. 26 1 ESC471 – Optical Tweezers Team Proposal Particular Technical Competencies and Other Relevant Experience...................................................... 28 Appendix D –Schedule for Implementation of Proposed Solution ............................................................. 30 2 ESC471 – Optical Tweezers Team Proposal 1. Executive Summary This proposal outlines the requirements and associated procedures necessary to ensure that the newly acquired Optical Tweezer system for the Advanced Physics Laboratory at the University of Toronto is safe for undergraduate student use. This cutting-edge research apparatus has been newly acquired by the Physics Department and will provide students with the opportunity to combine theoretical physics, nanoengineering, and bioengineering in a modern research environment. However, prior to deployment of the experiment, provisions must be made to ensure that the laser beam used in the experiment is secure and will not cause harm to the user. We will eliminate the hazards associated with the laser source of the Optical Tweezer system by implementing engineering and administrative laser safety controls. Our solution consists of enclosing the portions of the system in which there is an open laser beam, while providing a mechanism that allows the students to access these areas to align the laser at a reduced power. This will ensure that the optical trapping apparatus is safe for students unfamiliar with the significance of laser safety. As well as fulfilling the technical laser safety constraints, our experimental design also ensures that students will still be able to manipulate the apparatus and employ the optical tweezers setup to determine trap stiffness. A complete experimental protocol, mark composition, and teaching assistant lab manual will also be provided. 2. Background and Issues The Optical Tweezers Advanced Physics Laboratory will provide students with the unique opportunity to practically apply sophisticated theory regarding both laser emission and beam calibration in addition to that of optical trapping. Lasers are common tools in contemporary academic research, often applied to spectroscopy, laser cooling, and microscopy techniques. Thus, this laboratory experiment provides students with exposure to a modern field of research which will be integrated into the academic curriculum. The optical tweezers apparatus itself is cutting edge research technology, used most often for biological applications, such as cell sorting and cell motility. Utilization of this equipment will therefore expose undergraduate students to both modern physical and biological research tools and applications. The extensive range of applications for this apparatus makes the experiment ideal for the diverse assortment of undergraduate students who currently participate in the Advanced Physics Laboratory. Students majoring in the Nanoengineering and Physics Majors through the Engineering Science program, as well as students majoring in Physics through the Faculty of Arts and Science will greatly benefit from this experiment since it is directly applicable to their current academic studies. The existing optical tweezers apparatus, Optical Trapping Kit by Thorlabs, is a new lab within the Department of Physics that has been designed for use in an advanced teaching laboratory. The equipment has been tested; however, there is currently no provision for laser safety. The optical tweezers employ a 980nm trap laser with a maximum power output of 330mW. According to the manufacturer, the laser beam is predominantly encased by lens tubes, is not operated at the maximum power, and an exposed beam diverges after encountering the sample. As such, the system is considered to be a Class 1 laser when fully assembled and functioning appropriately [6]. A Class 1 laser is enclosed to prevent contact between a person and the exposed laser beam [5]. High-powered lasers are also 3 ESC471 – Optical Tweezers Team Proposal included in this classification, so long as the enclosure prevents exposure and cannot be opened without turning off the laser. If the trap is not completely assembled or the laser beam is exposed, the system is classified as a Class 3B laser (power is 5-500mW) and is considered hazardous. This may be the case while a user performs beam alignment. Thus, this apparatus requires the inclusion of an interlock system in order to be classified as a Class 1 laser, deeming it suitable for undergraduate use. Furthermore, a protocol for the optical tweezers experiment was developed in Professor William Ryu’s lab. This experiment will be utilized by the Department of Physics for the 3rd/4th year Advanced Physics Laboratories (Engineering - PHY327/427/428/429, Arts and Science PHY424/426/428/429) which is offered to students from various departments within the University of Toronto [7]. Thus, the provision of laser safety is critical and will enable a diverse range of students to utilize the apparatus. The existing protocol will be updated to include safety precautions and additional details as deemed necessary. 3. Requirements, Criteria and Constraints 3.1 – Requirements of Proposed Solution 3.1.1 Laser Safety The Laser Safety program at the University of Toronto was developed to assist the University community in the control of laser hazards, and must meet the following regulatory requirements [17]: U of T Health and Safety Policy Occupational Health and Safety Act of Ontario ANSI standard Z136.1 ANSI standard Z136.1 for educational institutions The laser diode that serves as the source for the Optical Tweezer system being improved has an output power of 330 mW [8]. Therefore, this laser source is classified as a Class 3B laser and can pose many risks to users of the system since a portion of the Optical Tweezer system has an open beam. In order to remain compliant with laser safety regulations, anyone who uses the Optical Tweezer system must participate in the University’s Laser Safety Program training prior to operating or working with the system and participate in the University’s medical surveillance program. Since this lab will be part of the third and fourth year Advanced Physics labs, in which the experiment would be carried out by a maximum of three students, each for a three-week period, it is not feasible for the students to receive this training. Therefore, the system must be reconfigured so that the laser beam cannot be exposed at full power. In order to do this, the output power of the laser must be lowered to a maximum of 5mW, thus making the laser risk a Class 3R, for which there is a low probability of injury, and the students using the system will not be required to attend the full-day laser safety course. 4 ESC471 – Optical Tweezers Team Proposal 3.2 – Criteria and Constraints for Proposed Solution 3.2.1 Technical Constraints Table 1 lists the technical constraints for the optical tweezers apparatus, developed in consultation with Professor Bailey, Professor Ryu, and Dr. Sandu Sonoc (Certified Laser Safety Officer, Radiation Protection Service): Table 1 Technical Constraints Item Description of Constraint ID T1 The Optical Tweezers experiment must be made safe for undergraduate students who have not taken the full day laser safety course and should be classified as a Class 1 laser. The optical tweezers system employs a 980nm laser with a maximum power output of 330mW. If the laser is exposed, it is considered a Class 3B laser. Appropriate measures must be taken to enclose the optical path of the beam. If the enclosure is opened for beam alignment, the laser power output must be reduced to 5mW (Class 1). T2 The light path where the beam is exposed to air should be enclosed. T3 The fibre optic should be enclosed. It would be helpful to be able to observe the fibre optic under the enclosure. T4 The reflected beam should not leak out from the sample stage, and the user must be able to move the sample stage using the knobs. There are x, y, and z knobs for sample stage movement. These must be accessible when the beam is on. T5 Budgetary constraints: Additional components added onto the existing apparatus should not exceed CDN $1000. T6 The design must prevent students from inserting an object into the path of the laser which could cause the beam to diverge. 3.2.2 Experimental Constraints and Criteria The optical tweezers experiment is designed for use by students in the Undergraduate Advanced Physics Laboratories (APL). The goals for the APL include presenting the student with the “opportunity to work on interesting and challenging experiments, deepen their understanding of the underlying Physics, and to further develop laboratory, analysis and communication skills.” [7]. Additionally, the “experiments in this course are designed to form a bridge to current experimental research. A wide range of experiments are available using contemporary techniques and equipment. Many of the experiments can be carried out with a focus on instrumentation.” [11]. As such, the following development of constraints that constitute a “good laboratory experiment” ranging from experimental constraints, to the experimental protocol and method of evaluation will reflect the objectives of the APL as well as approaches considered in educational journals. 5 ESC471 – Optical Tweezers Team Proposal 3.2.2.1 Experiment Constraints Table 2 lists the Experimental Constraints for the proposed solution. Table 2 Experimental Constraints Item Description of Constraint ID E1 The experimental procedure should be within 18 hours over the course of 3 weeks. Advanced Physics Laboratory structure. E2 The room door must be closed and locked with a temporary “Laser Work in Progress” sign placed outside the room door. This sign can be provided by Sandu Sonoc, the Senior Radiation Safety Officer. E3 Appropriate laser safety glasses must be worn at all times when using the equipment. E4 The beam will not be pre-aligned prior to the student commencing the lab. E5 The beam should be turned off when changing samples. Changing the sample involves moving somewhat reflective material in and out of the beam path. The beam must be turned off when this occurs. Normally, no light should reflect out when changing the sample, but there is a chance that if someone sticks something in (eg. A pen to indicate the beam position), then inserting an object may cause the beam to reflect wildly. E6 The laser power supply key should be kept by the technologist. E7 The experiment should be carried out individually. In accordance with APL structure. 3.2.2.2 Student Assessment Criteria Table 3 lists the Student Assessment Criteria for the experiments to be carried out on the Optical Tweezers System. Table 3 Student Assessment Criteria Item Description of Criteria ID SA1 The mark composition for the laboratory should not be completely data-driven, and should include a combination of data analysis within the student’s lab notebook as well as more general questions pertaining to the lab that assess the student’s understanding. It should also include a discussion with the TA/Professor regarding the results obtained. This is in accordance with APL structure, and the consultation with the TA/Professor would enhance oral and written communicability of technical material [12]. SA2 Adequate time must be provided to the student for completion of the lab write-up. SA3 The write-up should include a brief discussion of a research paper that utilizes Optical Tweezers to bridge the experiment to current experimental research [11]. 3.2.2.3 Experimental Protocol Criteria Table 4 outlines the criteria for the Experimental Protocol that will accompany any experiment to be carried out on the Optical Tweezers System. 6 ESC471 – Optical Tweezers Team Proposal Table 4 Experimental Protocol Criteria Item Description of Criteria ID EP1 Clear and succinct safety instructions must be given to the students through the experimental write-up, from the instructor, and displayed on the wall near the equipment. EP2 The experiment should present a challenge in figuring out the instrumentation and include more general instructions rather than a detailed procedure so as to be more engaging. This is in accordance with the APL structure. EP3 The entire experiment should be divided into sections or a series of experiments that investigate different concepts such that they can be carried out over the course of the 3-week lab. The experiment should not be repetitive or tedious. EP4 A more detailed experimental protocol should be provided to the TA/Professor to enable them to assist the students when necessary. This should detail the potential pitfalls that may be encountered [10]. EP5 The protocol should include the background and theory pertaining to the lab, as well as clearly detailed schematics of the apparatus. [10] EP6 A list of relevant websites that will aid the student in understanding the laboratory concepts or equipment should be included. EP7 The experiment should incorporate a variety of skills and techniques [10]. 3.2.2.4 Training Criteria Table 5 lists the criteria pertaining to the training that a user of the Optical Tweezers System will require. Table 5 Training Criteria Item Description of Criteria ID Tr1 The TA/Professor present during the laboratory session should be well acquainted with the experimental procedure and apparatus and should be available for assistance. Tr2 The student must require minimal initial training in order to execute the lab. Tr3 An introduction to the lab should be given by the TA/Professor to acquaint the student with the lab concepts, the equipment, expectations and clearly stated safety instructions. 7 ESC471 – Optical Tweezers Team Proposal 4. SURVEY OF EXISTING SOLUTIONS 4.1 – Laser Safety Solutions In order to control laser hazards, the design and implementation of engineering and administrative controls are necessary. Engineering controls consist of physical barriers designed to reduce the possibility of exposure of the eyes and skin and of other hazards associated with laser operation [8]. Examples of such controls include protective housing around open beams, interlocks on removable protective housing, key control, and the use of beam stops or attenuators. Administrative controls are used to ensure the proper implementation of engineering controls. These include controls such as standard operating procedures, output emissions limitations, training, and alignment procedures. 4.1.1 Engineering Controls The most common form of an engineering control for laser safety is the implementation of interlocks. An interlock is a method of preventing a certain state in a machine. In terms of laser safety, interlocks typically consist of physical barriers that must be in place in order for the laser to operate at full power. For example, a laboratory door interlock would ensure that the laboratory door must be closed in order for the laser to be turned on, thus preventing a person not wearing the proper protective equipment from entering the room while the laser is being operated [8]. 4.1.2 Administrative Controls Administrative controls include Standard Operating Procedures (SOPs), use of personal protective equipment (PPE), warning signs, laser hazard labels, and limited accessibility. SOPs for hazardous equipment must begin with laser identification information and a list of possible hazards, and the procedure must specify each step necessary to ensure that the laser is being used safely. Additionally, laser protective eyewear must be worn for the specific wavelength and optical density of the laser being used, and must be inspected before each use to ensure the integrity of the equipment. Other personal protective equipment can include face shields, gloves, lab coats and jackets, depending on the laser being used. Warning signs should be placed on the system that uses a laser, as well as in the area surrounding the equipment. 8 ESC471 – Optical Tweezers Team Proposal 5. PROPOSED SOLUTION There are two main components to the proposed solution: the laser safety component and the experimental component. The majority of the focus will be devoted towards ensuring laser safety for undergraduate student use, so as to eliminate the need for enrolling in the full-day laser safety training session. The experimental focus lies in the addition of the laser safety procedure to the pre-existing experiment, following by a walk-through of the experiment to ensure that the interlock system developed integrates well with the experiment. 5.1 – Laser Safety of Optical Tweezers System The safety of the laser consists of two primary goals: making the laser safe for students to use and also assuring that the laser itself is protected while in use. 5.1.1 – Protection of Laser: Enclosing the Fiber Optic Wire The trapping source (1 in Figure 1) in the OTKB Optical Trapping Kit is a temperature stabilized 330 mW (max) SM fiber-pigtailed laser diode with a central wavelength of 980 nm. The output of the laser is collimated using a FiberPort (2 in Figure 1), which allows the aspheric collimation lens to be precisely positioned along 5 axes (X, Y, Z, Pitch, and Yaw)[13]. The fiber optic wire connecting parts 1 and 2 is usually made of very thin layers of glass like material (usually Silica), but other materials such as fluorozirconate, fluoroaluminate, and chalcogenide glasses can also be used [14]. This wire must be handled with extra caution due to its sensitive material. There are numerous ways to harm this wire, including: pulling on the fibers, exceeding the maximum loading rate and bend radius, or twisting the cable and dropping an object on the fibre [15]. Due to the potential occurrence of these situations, it is an essential part of our design to enclose this section of the laser with a protective box. This protective box will be mounted on top of parts 1 and 2, including the fiber optic wire. 9 ESC471 – Optical Tweezers Team Proposal Figure 1 Ray Optics schematic of Thor Labs Optical Trapping Kit [13] It will also be controlled by a control button from the outside; students may only open the box when the laser is on by pressing the button. This button is controlled by an internal switch that will be discussed later. 5.1.2 – Safety of Users from Laser: Enclosing the open-beam region As previously noted, this laser is currently classified as a Class 3B laser when the laser beam is not covered by a physical barrier [16]. This occurs in the Optical Tweezers system between sections 2 and 4 as depicted in Figure 1. Persons operating an open-beam Class 3B laser are required to participate in the full day laser training session [18], which is not feasible for students in the Advanced Physics Laboratory course. If the open-beam sections of the apparatus are covered by an optically dense material, this laser can be re-classified as a Class 1 laser and it can be handled by students wearing appropriate laser safety goggles, and the laser safety training would not be necessary. However, for polarization applications, the keyway on the FiberPort can be rotated about the optical axis so that the orientation of a linearly polarized collimated beam can be set. A 2X beam expander (3 in Figure 1) is used to fill the aperture of the focusing objective (6 in Figure 1) [13]. The laser diverges at this section and thus increases the probability of occurrence of a harmful situation while re-aligning is being performed. In addition, since the light in this wavelength (980 nm) is not visible to the human eye, there is a high probability for harmful effects to occur without the knowledge of the student. 10 ESC471 – Optical Tweezers Team Proposal Therefore, it is necessary to enclose the open-beam region of the apparatus while the laser is being operated at full power. However, it is also necessary that students are able to remove this enclosure to align the laser, at which point the power output of the laser would have to be reduced to 5mW (Class 3R laser) so that laser hazards are eliminated. 5.1.2.1 – Potential Solution #1 Electromechanical: Control of laser depending on enclosure state (open/closed) It is one of our goals to make the laser safe for students by limiting the amount of power going through the laser after it has gone through Fiber Controlled Laser Source (part 1 in Figure 1) and the fiber optic wire. This can be done by inserting an optical density filter between the Fiber Port Collimator (part 2 in Figure 1) and the Beam Expander (part 3 in Figure 1). The optical density filter would reduce the power of the laser beam to the desired 5mW. This filter can be purchased from Thorlabs and mounted on the laser [19] using the Magnetic Mount already available to us. It is required by our clients that the students should not be able to open the enclosure around parts 1 and 2 when the laser is on and the power through the laser is more than 5mW. In order to address this, we would attach a touch sensor plan on top of the magnetic mount of the filter that will be turned on when the box is closed. The output of this touch sensor is input to an external control button. This control button will allow students to open the enclosure when the laser is on. For example, if the box is closed, the laser is on, and the magnetic mount is not inserted, the touch sensor will open the control button’s circuit and the latch that is controlled by the button will not work. Below is a rough schematic that demonstrates the connections: Figure 2 Block diagram of the laser enclosure, the magnetic mount, and connection to the touch sensor and control button Figure 3 demonstrates how the latch is controlled by the touch sensor: 11 ESC471 – Optical Tweezers Team Proposal Figure 3 Control of Latch using Touch Sensor The addition of the enclosure to the pre-existing apparatus is estimated to be about CDN $100, including the material and the latch. Since the magnetic mount has already been purchased, it will not be an additional cost. The sensor is priced at about CDN $50 on the Thorlabs website, and other parts that may need to be purchased (including circuit components, the control button, etc.) will cost about CDN $200. We estimate the total cost to be about CDN $500, which meets the budgetary constraints of CDN $1000. 5.1.2.2 –Potential Solution #2 Microcontroller: Control of laser depending on enclosure state (open/closed) Another method of controlling the laser power output would be through a microcontroller design. The controller (ITC510) would be interfaced with the IEEE488 that is based on the IEEE488.2 standard. This includes the IEEE488.1 standard for the hardware settings [20]. This interface can be used to control whether the laser is on or off by taking advantage of built in hard codes that can control the operation status of the laser [20]. The microcontroller device would be controlled based on an electrical connection made when a magnetically-mounted optical density filter (described in Potential Solution #1) is inserted in the laser pathway. When the optical density filter is inserted in front of the laser, the microcontroller receives the positive signal that the laser is safe. This would allow the laser to operate at its maximum power. If the mount is removed while the laser is in “on” mode at full power, a negative signal will be sent through the connection to the microcontroller which will result in a reduction of power or shut off the laser completely. Through this direct control of the state of the laser through the microcontroller, the experiment would be considered laser safe as the laser would be turned off in appropriate circumstances. As in Proposed Solution #1, the addition of the enclosure to the pre-existing apparatus is estimated to be about CDN $100, including materials and fabrication. The cost of the microcontroller is estimated to be CDN $100, with additional electrical components costing another CDN $50. This brings the total cost of this proposed solution to CDN $250, which is within our budgetary constraints. 5.1.2.3 –Potential Solution #3 Mechanical: Control of laser depending on enclosure state (open/closed) A third possible solution for ensuring the safety of the users from the laser depending on the enclosure state is to use an enclosure that consists of two components: 1) A left half of box which would be fully enclosed with plexiglass, and 2) A right half which consists of an optical filter and is not enclosed at the top (Figure 4). These two components would be connected and placed on a track, which would allow 12 ESC471 – Optical Tweezers Team Proposal movement of the box along the track. When the experiment is in operation once the beam has been aligned, component 1 would be in front of the beam as it is a fully enclosed box. It would protect laser beam from being exposed to the human eye and causing harmful effects, as it will be operating at full power (330mW). When the laser beam alignment takes place, the box must be slid along the track so as to place component 2 in front of the beam. This component would filter the high power beam and enable the student to safely perform beam alignment. The exposed top would allow appropriate access to the apparatus once the filter reduces the power of the beam to the acceptable value of 5mW. Thus, while the experiment is being carried out, the enclosed box would prevent exposure to the beam, and while beam alignment is taking place, the optical filter will reduce the laser beam power. This would enable the re-classification of the system to a Class 1 Laser. In addition, to prevent foul play, the entire enclosure will slide along a T-Track which will include barriers at either end. This physically prevents the box from being removed from the track and disables students from fiddling with the proposed interlock system, ensuring their safety at all times (Figure 4). The addition of the multi-component enclosure to the pre-existing apparatus is estimated to be about CDN $250, including materials for the plexiglass and tracks, as well as fabrication of the unique design. The cost of the optical density filter is estimated to be CDN $50. This brings the total cost of this proposed solution to CDN $300, which is within our budgetary constraints. Figure 4 Design of Proposed Solution #3; Mechanical Solution with 1) Fully enclosed plexiglass component, and 2) Optical filter component 5.1.2.4 Comparison of Proposed Solutions In order to select the most appropriate solution for the user safety design, there are a few key factors that must be considered: timeline constraints, team member qualifications, simplicity, feasibility, cost, and adaptability. 13 ESC471 – Optical Tweezers Team Proposal Timeline constraints are extremely critical to the successful implementation of any of the proposed solutions. As seen in the schedule in APPENDIX D, the final run-through of the altered experiment will take place in early December 2010. This allows the team one and a half months to implement the design change to the system while allowing a sufficient amount of time to complete the deliverables for the experimental portion of the design. Team member qualifications are also extremely critical due to the timeline constraints. Team member qualifications are summarized in APPENDIX C. Simplicity is necessary for the maintenance of this system once it is implemented in the Advanced Physics Laboratory courses, and feasibility is significant in having a successful solution by the end of the term so that the system can be used as soon as possible. The adaptability of the solution refers to the ability of the solution to successfully satisfy the design requirements and constraints in the case that further modifications are made to the system. For example, the Optical Tweezers system has an Atomic Force Microscope add-on that is currently not being used. If this were to be added to the system in the future, it would be necessary for the laser safety solution to be able to accommodate such a change. For each factor, the proposed solutions were ranked from 1-3, 1 being the most preferred solution and 3 being the least preferred solution. The results from this analysis are shown in Table 6. Cost was not included in this comparison since each proposed solution was estimated to cost much less than our budgetary constraint. Table 6 Comparison of Potential Solutions Factors for Consideration Timeline Constraints Team Member Qualifications Simplicity Feasibility Adaptability TOTALS Proposed Solution #1 Proposed Solution #2 Proposed Solution #3 2 2 3 3 1 1 3 2 3 12 2 3 2 12 1 1 1 6 5.1.2.5 Selection of Proposed Solution As seen from Table 6, Proposed Solution #3 is the most viable solution since its final viability score is 6. Since 3 out of the 4 members of the Optical Tweezers Team have previous experience with electromechanical processes through the AER201H1: Engineering Design course, this solution is the most feasible given the time constraints. Also, due to the lack of electrical components that would need to be modified in the case of future additions to the system, this is also the most adaptable design. Due to the high dependence on electrical components that can be interfered with by students using the system, the Proposed Solution #1 received a ranking of 3 for Simplicity. This solution also received a low 14 ESC471 – Optical Tweezers Team Proposal ranking for Adaptability, since changes to the circuitry in the future would require a lot of work (more so than changing the code for the microcontroller solution). Overall, this solution received a final viability score of 12. Since none of the team members are well-acquainted with hardware programming languages, the use of a microcontroller device (Proposed Solution #2) would be a goal that may not be achievable in the short period of time available to complete the laser safety procedure, perform the experiment and obtain meaningful results. Due to this, this solution has received a ranking of 3 (least preferred) for Timeline Constraints, Team Member Qualifications, and Feasibility, for an overall viability score of 12. 5.2 – Laboratory Experiment: Determination of Trap Stiffness As this laboratory experiment was previously developed by a student under the supervision of Professor Ryu in the summer of 2010, our client does not have a need for the development of additional laboratory activities. The existing laboratory design can be found in Appendix II. Rather than creating a new experiment and duplicating the work our client has previously produced, we will instead improve upon the existing structure by providing our client with a more detailed procedure for students and laboratory assistants. Through the provision of greater detail, we will ensure that students complete the lab in a safe and secure manner. 5.2.1 – Deliverables The following deliverables will accompany the reconfigured Optical Tweezer system. 5.2.1.1 Updated protocol including safety instructions The laboratory experiment that has been developed does not include any instructions regarding proper safety procedures. This document will be updated to include the relevant laser information and potential hazards, and a detailed Standard Operating Procedure (SOP) will be provided for turning the laser on/off and laser alignment. Any changes to the current apparatus will be included in the current instructions. 5.2.1.2 Proper Signage As a final step in ensuring that the Optical Tweezer system is laser safe, proper signage will be implemented. This will include signs on the door to the room in which the system is placed as well as warning signs on the system itself. 5.2.1.3 Evaluation of Existing Experiment Since the existing experiment has not been carried out by students taking the Advanced Physics Lab course, an evaluation of the existing experiment will be provided. This evaluation will focus on ensuring that there is no way to work around the designed controls for laser safety at every step throughout the experiment. This will also ensure that the implemented laser safety controls do not interfere with the functionality of the system. 15 ESC471 – Optical Tweezers Team Proposal 5.2.1.4 Teaching Assistant (TA) manual Since this is a new experiment, the TA may not have experience with using the Optical Tweezer system. Therefore, after evaluating the existing experiment, a detailed TA manual will be provided, containing hints such as which settings to use, software usage, etc. Additionally, a detailed explanation regarding how the laser safety controls work will be provided in this manual. These details will be left out of the “student” version of the experimental procedure to prevent students from fully understanding how the controls work, which would disable them from being able to work around the controls. 6. PROJECT SCHEDULE See APPENDIX D for the Project Schedule. This schedule includes the implementation of the proposed solution, the completion of the deliverables, and ESC471H1 assessment milestones. 7. CONCLUSION Through this proposal, a solution was presented that would ensure the newly acquired Optical Tweezer system for the Advanced Physics Laboratory at the University of Toronto is safe for undergraduate student use. This solution consists of an enclosure around the open-beam portion of the apparatus that consists of two components: one that allows the student to be fully protected from the laser while it is operating at full output power, and another that allows the student with access to the open-beam for alignment purposes with the laser at a reduced output power. This solution will ensure that the optical trapping apparatus is safe for students unfamiliar with the significance of laser safety, without requiring that the students participate in the full-day laser safety training. As well as fulfilling the technical laser safety constraints, our experimental design also ensures that students will still be able to manipulate the apparatus and employ the optical tweezers setup to determine trap stiffness. An updated experimental protocol will be provided, including all relevant laser safety and operation procedures, as well as proper laser safety signage and a teaching assistant lab manual. 16 ESC471 – Optical Tweezers Team Proposal 8. REFERENCES [1] Neuman KC, Block SM (2004). "Optical trapping". Review of Scientific Instruments 75 (9): 2787– 2809. [2] Ethier C. Ross, Simmons Craig A. (2007). “Introductory Biomechanics: From Cells to Organisms.” Cambridge, New York. 41-42. [3] Ashkin, A. (1970). "Acceleration and Trapping of Particles by Radiation Pressure". Phys. Rev. Lett. 24: 156–9. [4] Gordon JP (1973). "Radiation Forces and Momenta in Dielectric Media". Physical Review A 8 (1): 14–21. [5] “An Overview of the LED and Laser Classification System in EN 60825-1 and IEC 60825-1.” Lasermet Ltd. http://www.lasermet.com/resources/classification_overview.php [6] -http://www.thorlabs.com/newgrouppage9.cfm?objectgroup_id=3959 [7] http://www2.physics.utoronto.ca/~phy326/ [8] Laser Safety Course, Radiation Protection Service, University of Toronto. [9] http://www.thorlabs.com/thorProduct.cfm?partNumber=PL980P330J [10]E. Bell, “Laboratory Exercises”, Biochemistry and Molecular Biology Education, vol. 29, no. 3, 2001. [Online]. Available: http://onlinelibrary.wiley.com/doi/10.1111/j.15393429.2001.tb00086.x/pdf. Accessed Sept 26, 2010. [11]Engineering Academic Calendar 2010 – 2011. http://www.undergrad.engineering.utoronto.ca/Assets/UndergradEng+Digital+Assets/calendar1 011/Chapter+8.pdf [12]Panel on Undergraduate Engineering Education, Committee on the Education and Utilization of the Engineer, Commission on Education and Technical Systems, National Research Council. Engineering Undergraduate Education. Washington, DC: National Academy Press, 1986, pp.82. [Online]. Available: http://www.nap.edu/openbook.php?record_id=589&page=82. Accessed Sept 26, 2010. [13]Optical Trap Application Setup, Thorlabs Inc., 435 Route 206, Newton, NJ 07860 [14]Wikipedia [Online], Available: http://en.wikipedia.org/wiki/Optical_fiber [15]LANshack.com [Online], Available: http://www.lanshack.com/fiber-optic-tutorial-cable.aspx [16]D. C. Appleyard, K. Y. Vandermeulen, H. Lee, M. J. Lang, Optical trapping for undergraduates, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, 22 September 2006 [17]Wikipedia [Online], Available: http://en.wikipedia.org/wiki/Laser_safety [18]University of Toronto Environmental Health and Safety [Online], Available: http://www.ehs.utoronto.ca/services/laserpg/laserhome.htm [19]Thorlabs.com [Online], Available : http://www.thorlabs.com/NewGroupPage9.cfm?ObjectGroup_ID=3328 [20] Operation Manual ,Thorlabs Instrumentation,Laser Diode Combi Controller, Thorlabs Inc., 435 Route 206, Newton, NJ 07860 [21]Hartville Tool [Online], Available: http://www.hartvilletool.com/product/11036 17 ESC471 – Optical Tweezers Team Proposal APPENDIX A – Technical Components of Optical Tweezer System The following information has been obtained from the “Optical Trap” laboratory manual, published August 9, 2010, by the lab of Professor William Ryu, of the Department of Physics at the University of Toronto. Basic Trapping components: The collimated IR beam (980 nm) from the _ber laser -red lines - is expanded by the two Relay Lens to _t the objective lens and give the beam a higher Numerical aperture (NA) - refer to [8] for an explanation of why the NA needs to be consider for optical traps. A beam focused by the objective will trap objects near its bean waist which is adjusted to be slightly upstream from the focal plane of the lens because scattering forces tend to push a beads upstream. The beam is then collimated again by the Condenser and focused onto the Quadrant Detector so that high frequency positional data may be recorded. The broad spectrum LED Light Source -blue lines-is separated from the trapping light by the two Dichroic Mirrors and illuminates the image for the CCD Imaging Detector. LD and TEC Controller: The THORLABS ITC502 Laser Diode Combi Controller is responsible for controlling current to the _ber laser and thermoelectric cooling unit (TEC). The full operations manual may be found on-line at the Thor Labs website. Figure 1: Laser Diode Combi Controller. Thorlabs, 2006. Instructions to turning on the trapping laser: Contact an instructor before turning on the laser to ensure that all safety precautions are taken. 18 ESC471 – Optical Tweezers Team Proposal Turn the Mains Control Switch to the ON position. Use Display Selections keys to select ITEC LIM and make sure that it is around 7 Amps. Select TSET and set the value to 10 k using the Main Dial TEC. Power on the TEC. Select ILD LIM and make sure that it is around 800 Amps. Select ILD and set the value to 0 using the Main Dial LDC. Power on the Laser Turn the Main dial LDC adjust the strength of the trapping laser. Note: While currents of > 85 mA are needed to maintain a trapped bead, higher currents > 200 mA are usually needed for the initial trapping. Piezo sample stage: The NanoMax MAX311 piezo transition stage allows nanometric movements of the sample in all three dimensions using piezo actuators. The stage is controlled through a T-Cube controller on the THORLABS T-Cube USB Controller Hub. Two axis (X and Y ) of the stage's piezo actuators operate in closed loop con_guration with strain gauge readers to give high precision position control. The system maybe controlled through the APT software and LabView ActiveX VI's. For the purpose of this lab, only the LabView VI OTcontroller.vi will be used. OTKBFM module: The Force Measurement Module uses a quadrant detector and a high frequency Data Acquisition (DAQ) Device to obtain force, sti_ness and position data from the base optical trap system. The analog signal transferred as a digital signal to the computer by the DAQ device which is capable of recording the data at over 10; 000 MHz. Controlling the sample stage: All of the APT controls required in this lab may be found in the OTControls.vi virtual instrument. The z-component must be controlled using the built in micrometer but the other two components may be controlled to nanometer precision by the software. The output of the position is set to 1-100% of the maximal extension of the piezo actuators which is 20 microns. When the program is in Sine mode, you may change the SineO_set and SineAmplitude slowly to make sure that the voltage output for the actuator is between �7 and +75 Volts. CCD camera: The CCD camera is controlled through the uc480viewer software. After opening the software, press the Open camera button to display the image, then press the Camera properties button to con_gure the camera. Under the Format tab, the debayering method Direct raw bayer (Y8) and the Hardware con_guration 3_3 should be selected. Once a bead is trapped, you should crop the image by accessing the Size tab and changing both Width and Height to 120 pixels and adjusting Left and Top accordingly to capture the trapped bead in the _eld of view. The Exposure time may be controlled under the Camera tab should the need arise. To record a video from the CCD camera go to File>_>Record video sequence and press the Create button. Once a _le path has been set, Change the JPEG Quality to 100 and Max Frames to 500 then press Record. The data will be saved in .avi format which may be processed by positions.m (Appendix D). Calibrating and using the quadrant detector: The quadrant detector is made up of four photo diodes that divide the detector surface into 4 quadrants. The output XDi_ and YDi_ reports the combined 19 ESC471 – Optical Tweezers Team Proposal voltage di_erence between the X and Y quadrants respectively. The detector also measures the total voltage for all four sectors -Sum- which will be divided into the XDi_ and YDi_ value to normalize them. The data is sent to the computer through both the T-Cube USB Controller Hub and the DAQ device. The lower speed USB data is displayed inside the OTControls.vi software while the high speed data will be captured by the DAQ device when you press the Record button in the software. To calibrate the voltage vs. position relationship of the quadrant detector, you will need to use a bead that is stuck to the coverslip. Use the position controls to center bead in the trap - if the bead is centered, you should notice linear de_ections in the X voltage as you tune the X positions and only very small changes in the Y voltage. Once the bead is centered, change the controller to Sine mode and oscillate the bead at a very low frequency and high amplitude and record the position and voltage data. You may linearize the relationship around the center to get the normalized voltage to position conversion. Figure 2: Calibrating the quadrant detector. Appleyard, 2007. 20 ESC471 – Optical Tweezers Team Proposal APPENDIX B – Existing Experiments for Optical Tweezer System The following information has been obtained from the “Optical Trap” laboratory manual, published August 9, 2010, by the lab of Professor William Ryu, of the Department of Physics at the University of Toronto. Experiments Optical traps operate best when the trapping laser wavelength and the diameter of the trapped bead are comparable [4]. In this regime, neither of the two approximations are valid and theories regarding trapping in this regime are very complex. Hence the stiffness of traps working in this regime cannot be accurately predicted. Given the fact that different beads and laser powers will often be required during experiments, empirical methods of determining the stiffness of an optical trap is crucial. The calibration experiments outlined in this lab will take you through a variety of methods to determine the trap stiffness. The first method will employ the equipartition theorem for a trapped bead undergoing thermal fluctuations; the second method will seek to measure the detection of the trapped bead under external forces produced by Stokes' drag; the third method will take advantage of the high data acquisition rates offered by the quadrant detector to produce the power spectrum of a trapped bead and infer the stiffness from theoretically predicted features. Figure 3. Linear relationship of the displacement and velocity Appleyard 2007. 21 ESC471 – Optical Tweezers Team Proposal 1) Equipartition For each degree of freedom in the motion of particle, there will be 1/2kBT of thermal energy, where kB is the Boltzmann constant and T is the temperature in Kelvin. When the bead is not trapped, the thermal energy is converted into kinetic energy and the bead will undergo random walk in the medium. If the bead is in a harmonic trap, the thermal energies become potential energies manifested in a small displacement. Over large sample sizes the fluctuations will give the result: (1) where {x2} is the variance of the x displacements (Instructions on recording .avi videos from CCD camera are given in Appendix A and instructions on converting the videos to positional data are in Appendix D). 2) Stokes' Drag A more direct way of measuring the stiffness is simply to apply an external force and measure the deflection. At low Reynolds numbers, external force may be applied to the trapped bead by oscillating the sample stage. The liquid inside the will move in unison with the sample stage and for liquid velocity v the drag force applied to the bead will be: (2) Since the strength of the optical trap decreases as you move further into the medium, the optimal working distance for the optical trap is a few microns above the coverslip. Because of the proximity of the trapped bead to the boundary, Stokes' drag will not be suffcient in calculating the drag coefficient B. For a better approximation of the drag coefficient you will have to correct for wall effects with the formula: (3) where r is the radius of the bead and h is the height of the center of the bead with respect to the coverslip surface. (Directions on finding the height, h, are given in Appendix C). Once the bead is trapped, you can begin recording the positional data from the CCD camera while oscillating the sample stage (Refer to Appendix A). If the bead is assumed to be in equilibrium, then the drag force, Fd, will be balanced by the trapping force, Ft = kx, from which the stiffness, k, may be calculated. The maximal deflections of the bead will correspond to the maximal external force from the surrounding liquid. Thus you will need to measure the maximal deflections at several different frequencies and find the displacement to force relationship to calculate the stiffness. The maximal deflection, xmax, should be half the width of the data in the x-direction and the maximal force, Fmax, should correspond to the maximal velocity Fmax= Bvmax. 22 ESC471 – Optical Tweezers Team Proposal 3) Power Spectrum In the low Reynolds number regime, the equation of motion for the bead will be that of a massless damped oscillator: (4) Where x is the displacement of the bead and B is the drag coefficient. The external Brownian force F(t) is random, and is essentially white noise with an amplitude of (5) The Fourier transform of equation (4) is: (6) Thus, the power spectrum of the position is given by: (7) Equation (7) is a Lorentzian with a cornering frequency of fc = k/ which will give the stiffness, k. Since taking the power spectrum require high frequency components, the 30 fps acquisition rate of the CCD camera will not be sufficient, thus a quadrant detector with a high data acquisition rate must be employed (instruction for using and calibrating the quadrant detector are found in Appendix A). The spectrums of many data sets (taken at a the same power and bead height) may be averaged to reduce the noise level at high frequencies. Figure 4. Ideal power spectrum with label of corner frequency 23 ESC471 – Optical Tweezers Team Proposal Extra Experiments Blur Correction for the CCD Camera When using detection systems such as a CCD camera, it is important to note the precision of the position measurements are limited by the exposure time of the camera [7]. The measured position X m, is an average of the instantaneous positions X taken over a finite interval, W, which is the exposure time of the CCD pixels. The simplest model is a step function exposure factor: (8) In the application of the equipartition theorem, this blur effect implies that {X2m} is less than or equal to {X2}, which will lead to an over estimation of the trap stiffness. If we define the dimensionless parameter, in terms of the trap relaxation time, and the exposure time W: (9) and the relaxation time, , is given by = /k. The variance of X and Xm will be related by: (10) Where S() is the correction function: (11) Using the information above, correct for the blur effect in the equipartition experiment. Can you find a way to calculate the correction term without knowing the drag coefficient ? Using the Quadrant Detector Perform the equipartition and Stokes' drag experiments using the quadrant detector. What are the advantages? Analysis Questions 1. Derive the expression for the gradient force for equation (3) in detail. 2. Show that the forces acting on the bead is in the low Reynold's number regime, and that the assumptions of Stokes' drag are appropriate. 3. Derive equation (7), include an argument for the validity of equation (6). 4. Explain the disadvantages of the second method for determining trapping height 24 ESC471 – Optical Tweezers Team Proposal APPENDIX C – Team Qualifications The following outlines the qualifications of the Optical Tweezers Team members that will be significant in ensuring the successful implementation of the proposed solution for the Optical Tweezers system. Relevant Educational Experience Each member of the Optical Tweezers Team is currently a fourth year student in the Engineering Science program at the University of Toronto. Table C 1 lists each member’s chosen major, and the relevance of this educational background. Table C 1 Optical Tweezer Team Members' Educational Background Team Member Name Hasmita Singh Engineering Science Major Biomedical Engineering Laura Poloni Shannon O’Keefe Maryam Badakhshi Nanoengineering Electrical Engineering Electrical Engineering Relevance of Educational Background Experience with the design of Molecular Bioengineering lab protocols will aid in understanding biological applications of the Optical Tweezer system and in experimental design. Strong background in physics labs, quantum physics and microscopy will provide the necessary knowledge for understanding the Optical Tweezer system and the significance of the capabilities of the system. Experience with electrical design and electronics will aid in the design of electrical components as required. Table C 2 lists the courses that have been taken by one or more of the Optical Tweezer Team members. Only courses that are relevant to understanding the Optical Tweezer system and implementing the proposed solution to the system are listed. Table C 2 Relevant Courses Taken by Team Members Department Aerospace Science and Engineering Biomaterials and Biomedical Engineering Biomaterials and Biomedical Engineering Electrical and Computer Engineering Electrical and Computer Engineering Course Code AER201H1 S Course Title Engineering Design BME340H1 S BME395H1 S Biomedical Engineering Instrumentation and Technology Cellular Molecular Bioengineering I ECE159H1 S Fundamentals of Electric Circuits ECE259H1 S Electromagnetism 25 ESC471 – Optical Tweezers Team Proposal Electrical and Computer Engineering Electrical and Computer Engineering Electrical and Computer Engineering Electrical and Computer Engineering Electrical and Computer Engineering Electrical and Computer Engineering Electrical and Computer Engineering Electrical and Computer Engineering Engineering Science Engineering Science Engineering Science Engineering Science ECE318H1 S Fundamentals of Optics ECE350H1 F Physical Electronics ECE352H1 F Computer Organization ECE354H1 S Electronic Circuits ECE355H1 F Signal Analysis and Communication ECE356H1 S Linear Systems and Control ECE357H1 S Electromagnetic Fields ECE360H1 F Electronics ESC101H1 F ESC102H1 F ESC201H1 F ESC301Y1 Y Materials Science Engineering Physics Physics Physics Physics MSE358H1 S Praxis I Praxis II Praxis III Engineering Science Option Seminars (for the Biomedical Engineering, Electrical Engineering, and Nanoengineering options) Structure and Characterization of Nanostructured Materials Classical Mechanics Advanced Physics Laboratory Introduction to Quantum Mechanics Atoms, Molecules and Solids PHY180H1 F PHY327H1 S PHY355H1 S PHY358H1 S Relevant Industry Experience All members of the Optical Tweezer Team have completed a Professional Experience Year (PEY), which is a program offered to undergraduate engineering students at the University of Toronto that allows students to complete a 12-16 month internship. Participation in this program has provided each member with valuable practical experience that will assist in completing any engineering design project, and is summarized in Table C 3. Table C 3 Relevant Industry Experience Optical Tweezer Team Member Hasmita Singh PEY Position Relevant Experience Quality Assurance team member at Canadian Institute for Health Information Performed functional testing of various healthcare applications based on requirements and functional specifications including defect investigation Communicated with the various members of the 26 ESC471 – Optical Tweezers Team Proposal (CIHI) Laura Poloni Engineering Intern, Project Management Office at Ontario Power Generation Shannon O’Keefe Electrical Engineering Intern, Sustainment Investment Planning at Hydro One Inc. Maryam Badakhshi Analog IC Intern, Synopsys Inc. interdisciplinary team located in multiple cities in order to fully comprehend the projects and seek aid from the appropriate individuals as necessary Developed a database to manage purchased service work for the entire Nuclear division of OPG, eliminating inefficiency and errors resulting from the previous manual process Participated in the testing of new software applications being integrated into the Nuclear Projects and Midifications (P&M) division by conducting configuration and functionality checks Developed training guides for the new cost and scheduling software being implemented to assist Project Teams throughout the implementation of new software applications Created and standardized planned preventative maintenance procedures for all Hydro One owned power equipment Analyzed data from the Enterprise Resource Planning software, SAP, to provide maintenance justifications and equipment recommendations for capital replacement expenditures Functioned cohesively with colleagues to develop, publish, and teach seminars illustrating the uses of SAP Performed as the main designer for MOSFET reliability simulations; used and quality-analyzed the models as well as created reports for the customers based on the simulation results Worked with SOI technology in most projects and became familiar with the behavior of the device Automated the setup and hold checking process for flip flops and latches using VerilogA as well as the creation of USB lanes using a PERL script Created testcases and STARs; helped designers overcome the simulation problems they encountered Designed and modified parts of the USB design, made sure some analog blocks were functioning as expected by running testbenches and analyzing the results using different post processing tools 27 ESC471 – Optical Tweezers Team Proposal Particular Technical Competencies and Other Relevant Experience Table C 4 lists the particular technical experience of each member, as well as other experience that will aid in the development of the educational tools that will be included in the final design submission as well as successful implementation of the proposed solution within the time constraints. Table C 4 Other Relevant Experience Optical Tweezer Team Member Hasmita Singh Laura Poloni Shannon O’Keefe Maryam Badakhshi Overall Skills Relevant Experience Electromechanical member of design team for AER201H1: Engineering Design; use of iterative approach for system development Experience with BME395H1: Cellular Molecular Bioengineering lab protocols; designed a protocol for engineering nanoparticles for this course Teaching Assistant at UofT’s da Vinci Engineering Enrichment Program (DEEP) for Medical, Bio-medical and Chemistry courses for students in grades 9-12 Assistant teacher at Xincon College; developed course material and lectures Tutored several middle-school students in Math, English, Social Studies and French Electromechanical member of design team for AER201H1: Engineering Design Completed the University of Toronto Radiation Protection Service Laser Safety Course Experience with PHY327: Advanced Physics Labs course structure and learning goals Participated in the Institute of Biomaterials and Biomedical Engineering (IBBME) Undergraduate Summer Research Program, conducting research in single cell microscopy; gained experience in microscopy and use of lasers Responsible for designing and creating circuitry for AER201H1: Engineering Design Experience with EDA tools such as HHSPICE, Cosmos, and Cadence for circuit analysis Experience with theoretical analog and digital electronics associated with practical design Electromechanical member of design team for AER201H1: Engineering Design Through analog electronics courses, has experience with electrical circuits Experience with EDA tools such as HHSPICE, Cosmos, and Cadence for circuit analysis Tutor for First Year Undergraduate Engineering students Tutor for several students grades 1-12 for Math and English Strong leadership abilities and organizational skills 28 ESC471 – Optical Tweezers Team Proposal Ability to carry out tasks logically and systematically through research and incorporation of client feedback Experience working efficiently in a multidisciplinary team Experience with development of technical documentation for design projects and presentations to clients Excellent oral communication and interpersonal skills Proficiency in: MS Office 2007, MATLAB, CAD tools such as SPICE, Cosmos, Cadence, and programming languages such as C, C++ and PERL 29 ESC471 – Optical Tweezers Team Proposal Appendix D –Schedule for Implementation of Proposed Solution The schedule on the following page outlines the timeline for the successful implementation of the proposed solution. Milestones are listed in bold, and are represented by a diamond shape. 30 ESC471 – Optical Tweezers Team Proposal