Basic Terms and Concepts • Knowledge of DNA has led to an ability to manipulate the genes of organisms • We can clone genes and then use them to alter the genome of viruses and cells • Known as genetic engineering • Cloning the production of identical copies of an organism through asexual means • Gene cloning the production of identical copies of a single gene • Accomplished through • Recombinant DNA technology • Polymerase chain reaction (PCR) • Reasons for gene cloning • Produce large quantities of a gene’s protein product • Ex: insulin • Learn how a cloned gene codes for a particular protein • Use the genes to alter the phenotypes of other organisms in a beneficial way • When used to modify humans it’s referred to as gene therapy • Organisms with foreign DNA or genes inserted into them are called transgenic organisms • Recombinant DNA (rDNA) • Contains DNA from two or more different sources • Ex: human cell and bacterial cell • To make rDNA, a researcher needs a vector • Vector: a piece of DNA that can be manipulated such that foreign DNA can be added to it • Example: plasmid a very small accessory ring of DNA from bacteria that are not part of the bacterial chromosome and are capable of self-replicating • Polymerase Chain Reaction • Can create billions of copies of a segment of DNA in a test tube • Amplifies a targeted DNA sequence • Requires the use of DNA polymerase and nucleotides • Involves 3 basic steps that occur repeatedly to create many copies of DNA copies exponentially • Analysis of PCR • Each person has a unique collection of DNA fragment size • Gel Electrophoresis • An electrical current is used to force DNA through a porous gel material • Fragments are separated according to their size • Smaller fragments move farther through the gel than larger fragments • Result in a pattern of distinctive bands called DNA Fingerprints Types of cellular cloning • Besides recombinant DNA, there are two other types of cloning Reproductive & therapeutic cloning • Reproductive cloning • a technology used to generate an animal that has the same nuclear DNA as another currently or previously existing animal • Ex: Dolly was a sheep created by reproductive cloning technology. • Process • Somatic cell nuclear transfer (SCNT • Involves the transfer genetic material from the nucleus of a donor adult cell to an egg whose nucleus, and thus its genetic material, has been removed • The reconstructed egg containing the DNA from a donor cell must be treated with chemicals or electric current in order to stimulate cell division. • Once the cloned embryo reaches a suitable stage, it is transferred to the uterus of a female host where it continues to develop until birth • Therapeutic Cloning • Also called "embryo cloning,” • The production of human embryos for use in research • Goal of this process is not to create cloned human beings, but rather to harvest stem cells that can be used to study human development and to treat disease. • Stem cells are important to biomedical researchers because they can be used to generate virtually any type of specialized cell in the human body. • Stem cells are extracted from the egg after it has divided for 5 days. • The egg at this stage of development is called a blastocyst • Medical applications for Therapeutic cloning • Treatment for degenerative diseases • • • • Alzheimer's’ Stroke and heart diseas Nerve disorders like Parkinson's, Disorders involving paralysis or degeneration of the spine • Muscular dystrophy • Demylination ALS, ALD • Designer cancer therapy • Generation of “tailor made” organs • No need for anti-rejection drugs • Decreases demand for transplant organs • Application for Organ Transplants • Known as organogenesis: the growth, or creation, of organs using stem cells • To do this, DNA would be extracted from the person in need of a transplant and inserted into an enucleated egg. • After the egg containing the patient's DNA starts to divide, embryonic stem cells that can be transformed into any type of tissue would be harvested • The stem cells would be used to generate an organ or tissue that is a genetic match to the recipient • In theory, the cloned organ could then be transplanted into the patient without the risk of tissue rejection. • If organs could be generated from cloned human embryos, the need for organ donation could be significantly reduced Transgenic organisms • Bacteria, plants, and animals that are transgenic are more commonly called genetically modified organisms (GMO) • Products from GMO’s are called biotechnology products • Ex: blood clotting factors, insulin, human growth hormone, hepatitis B vaccine • Transgenic Bacteria • Produced using recombinant DNA • Grown in vats called bioreactors • The bacteria express the cloned gene, and the gene product is usually collected from the medium where the bacteria is grown • Uses • Medical: insulin & vaccines • Agriculture: use of bacteria to make frostresistant plants, insect-resistant corn • Bioremediation: naturally occurring bacteria that eat oil can be genetically engineered to do an even better job of cleaning up oil spills • Biochemistry: a certain bacteria is used to create phenylalanine, an organic chemical used to make aspartame, an artificial sweetener • Transgenic plants • Foreign genes are placed into protoplants, or immature plant embryos • Will develop into mature plants that express the foreign DNA • Example • Pomato • Plant produces potatoes below ground and tomatoes above ground • Foreign genes transferred to cotton, corn ,a dn potato strains have made them resistant to pests • Cells produce insect toxin • Transgenic animals • Method of DNA combination: Vortex mixing • Eggs are placed in an agitator with DNA and slicon-carbide needles • The needles make tiny holes in the eggs through with the DNA can enter • When the eggs are fertilized, the resulting offfspring are transgenic animals • Applications • Eggs have acquired the gene for bovine growth hormone, which produces larger fish, cows, pigs, rabbits, and sheep • Gene pharming • The use of transgenic farm animals to produce pharmaceuticals • Genes that code for therapeutic and diagnostic proteins are incorporated into an animal’s DNA, and they appear in the milk • Examples • Cystic fibrosis, cancer, and blood diseases Gene Therapy & the Human Genome Project • Gene therapy is a treatment that involves altering the genes inside your body's cells to stop disease. • Genes that don't work properly can cause disease. • Gene therapy replaces a faulty gene or adds a new gene in an attempt to cure disease or improve your body's ability to fight disease. • Gene therapy holds promise for treating a wide range of diseases, including cancer, cystic fibrosis, heart disease, diabetes, hemophilia and AIDS. • Currently, in the United States, gene therapy is available only as part of a clinical trial. • Researchers are testing several approaches to gene therapy, including: • Replacing a mutated gene that causes disease with a healthy copy of the gene. • Inactivating, or “knocking out,” a mutated gene that is functioning improperly. • Introducing a new gene into the body to help fight a disease. • One challenge is gene delivery how to get the new or replacement genes into the desired tissues • Use of a vector is needed • Most effective vector is the use of harmless viruses • Virus DNA is removed and replaced with the new or replacement genes • Gene is delivered via the vector to the host cells • Stem cells containing the desired gene can also be used as a vector, which are incorporated into the affected tissue • Example •Imagine, for example, a little boy with hemophilia, a condition that is caused by a faulty gene that makes his liver unable to make blood clotting factor 8 • Gene therapy would involve putting a working copy of the gene which codes for factor 8 into his liver cells so that his liver could then produce adequate levels of factor 8 • Human Genome Project • an international research effort to sequence and map all of the genes of members of our species, Homo sapiens • known as the genome • Completed in April 2003 • HGP gave us the ability, for the first time, to read nature's complete genetic blueprint for building a human being • Project Goals • identify all the approximately 20,000-25,000 genes in human DNA • determine the sequences of the 3 billion chemical base pairs that make up human DNA • store this information in databases • improve tools for data analysis • transfer related technologies to the private sector • address the ethical, legal, and social issues (ELSI) that may arise from the project.