1 History of DNA • Early scientists thought protein was the cell’s hereditary material because it was more complex than DNA • Proteins were composed of 20 different amino acids in long polypeptide chains copyright cmassengale 2 Frederick Griffith In 1928, Frederick Griffith carried out experiments on pneumonia bacteria in mice. Discovery: something in heat-killed virulent bacteria could be transferred to live, harmless bacteria and make them virulent. Griffith’s Experiment Oswald Avery Avery continued working with Griffith’s findings in hope of discovering what factor in bacteria carried the trait of virulence. Isolated proteins, carbohydrates, nucleic acids and applied them to nonvirulent bacteria. Only nucleic acids (DNA) caused a change. The History of DNA • Alfred Hershey and Martha Chase - 1952 – radioactive isotope tracer experiment – bacterial virus (bacteriophage T2) infects a host cell ( bacterium Escherichia coli) – found that T2 virus DNA, not its protein coat, enters the host cell – genetic information for replication of the virus T 2 grown in media containing S35 incorporate S35 into their proteins Using S35 T2 attach to bacteria and inject genetic material Bacteria grown in normal nonradioactive media When centrifuged, phage protein coats remain in the supernatant while bacteria form a pellet. The supernatant is radioactive, but the pellet is not. Did protein enter the bacteria? Blending causes phage protein coat to fall off Is protein the genetic material? T2 grown in P32 containing media incorporate P32 into their DNA Using T2 attach to bacteria and inject genetic material 32 P Bacteria grown in normal nonradioactive media When centrifuged, phage protein coats remain in the supernatant while bacteria form a pellet The pellet is radioactive, but the supernatant is not. Did DNA enter the bacteria? Blending causes phage protein coat to fall off Is DNA the genetic material? Erwin Chargaff Chargaff studied DNA itself, in hopes of providing some clues about its structure. Discovered that there are always equal amounts of the bases Adenine and Thymine, and equal amounts of Cytosine and Guanine. Chargaff proposed that these bases pair with one another in some way. •Adenine and Thymine always join together A T • Cytosine and Guanine always join together C G Wilkins and Franklin Rosalind Franklin and Maurice Wilkins worked with X-ray crystalography to find more clues about the structure of DNA. Franklin’s X-ray images suggested a helical structure. Franklin and Wilkins Watson and Crick James Watson and Francis Crick were also working on discovering the structure of DNA. Applied Chargaff’s rule, assumed that A always pairs with T, C with G. Watson was not entirely convinced of the helical structure that Franklin had suggested, and his critique of her work led her to doubt herself. Watson and Crick Wilkins consulted with Watson and Crick. Without Franklin’s knowledge, he handed them the data that he and Franklin had worked on. Watson immediately recognized the significance. He and Crick went to work on a model of DNA. The First DNA Model DNA • DNA is often called the blueprint of life. • In simple terms, DNA contains the instructions for making proteins within the cell. 15 The Shape of the Molecule • DNA is a very long polymer. • The basic shape is like a twisted ladder or zipper. • This is called a double helix. 16 One Strand of DNA • The backbone of the molecule is alternating phosphates and deoxyribose sugar • The teeth are nitrogenous bases. phosphate deoxyribose bases 17 One Strand of DNA nucleotide • One strand of DNA is a polymer of nucleotides. • One strand of DNA has many millions of nucleotides. 18 Four nitrogenous bases DNA has four different bases: C • Thymine T • Adenine A • Guanine G • Cytosine 19 Two Kinds of Bases in DNA • Pyrimidines are single ring bases. • Purines are double ring bases. N N C O C C N C N N C C C N N C N C 20 Thymine and Cytosine are pyrimidines • Thymine and cytosine each have one ring of carbon and nitrogen atoms. N O C C O C C N C thymine N O C C N C N C cytosine 21 Adenine and Guanine are purines • Adenine and guanine each have two rings of carbon and nitrogen atoms. N C Adenine N C C N O N C N N C N C C C N Guanine C N N C 22 Two Stranded DNA • Remember, DNA has two strands that fit together something like a zipper. • The teeth are the nitrogenous bases but why do they stick together? 23 C N N C N C C C C N N N C C C O • The bases attract each other because of hydrogen bonds. • Hydrogen bonds are weak but there are millions and millions of them in a single molecule of DNA. • The bonds between cytosine and guanine are shown here with dotted lines N Hydrogen Bonds N O 24 Hydrogen Bonds, cont. • When making hydrogen bonds, cytosine always pairs up with guanine • Adenine always pairs up with thymine • Adenine is bonded to thymine here N O C C O C C N C 25 DNA Replication 26 Replication Facts • DNA has to be copied before a cell divides • DNA is copied during the S or synthesis phase of interphase • New cells will need identical DNA strands 27 What Is DNA Replication • DNA Replication is the process in which the DNA within a cell makes an exact copy of itself. – Why does DNA replicate? – During which phase of the cell cycle does DNA replicate? DNA Replication models The Three Possible DNA Replication Models • Conservative- would leave the original strand intact and copy it. • Dispersive-would produce two DNA molecule with sections of both old and new along each strand. • Semiconservative –would produce DNA molecule with both one old strand and one new strand. DNA Replication Replication occurs during Interphase Replication fork Replication fork Replication bubble Hydrogen bond DNA replication is the process where an entire double-stranded DNA is copied to produce a second, identical DNA double helix. DNA Replication DNA helicase • Helicase unwinds the double helix starting at a replication bubble. • The two strands separate as the hydrogen bonds between base pairs are broken. • Two replication forks form and the DNA is unwound in opposite directions. DNA Replication •Helicase has completed unwinding the DNA strand. •Single strand Binding Proteins (SSB) keep the two strands from re-annealing (coming back together). DNA Replication Leading Strand Primase RNA Primer Lagging Strand •Primase is an RNA polymerase that makes the RNA primer. •These primers “tell” the DNA polymerase where to start copying the DNA. DNA Replication Leading Strand 5’ 3’ Direction of Replication DNA Polymerase 5’ Direction of ReplicationLagging Strand 3’ • The DNA polymerase starts at the 3’ end of the RNA primer of the leading stand CONTINUOUSLY. • DNA is copied in 5’ to 3’ direction. • DNA polymerase copies the lagging strand DIS- continuously. DNA Replication Another DNA Polymerase removes the RNA primers and replaces them with DNA. DNA Replication ligase Finally the gaps in the sugar phosphate backbone are sealed by DNA ligase There are now 2 identical double helices of DNA.