Ó Springer-Verlag 2000 Mol Gen Genet (2000) 263: 648±654 ORIGINAL PAPER Y.-M. Bi á N. BrugieÁre á Y. Cui á D. R. Goring S. J. Rothstein Transformation of Arabidopsis with a Brassica SLG /SRK region and ARC1 gene is not suf®cient to transfer the self-incompatibility phenotype Received: 11 November 1999 / Accepted: 14 February 2000 Abstract Self-incompatibility (SI) promotes outbreeding in ¯owering plants, and in Brassica SI is genetically controlled by the S locus. Self-incompatible Brassica and self-fertile Arabidopsis belong to the same crucifer family. In addition, a comparative analysis reveals a high degree of microsynteny between the B. campestris S locus and its homologous region in Arabidopsis ± with the notable exception that the Brassica SI genes, SLG and SRK, are missing. Brassica ARC1 encodes a component of the SRK signal transduction pathway leading to self-pollen rejection, and no closely related ARC1 homolog has been identi®ed in Arabidopsis. The purpose of the research reported here was to introduce Brassica SI components into Arabidopsis in an attempt to compensate for the missing genes and to investigate whether the SI phenotype can be transferred. Inserts of approximately 40 kb from the fosmid clones F20 and F22, which span the B. napus W1 SLG-SRK region, were cloned into the plant transformation vector pBIBAC2. Transgenic plants were generated that expressed the Brassica SI genes in the ¯ower buds. In addition, the endogenous, SLG-like, gene AtS1 was not co-suppressed by the Brassica SLG transgene. No SI phenotype was observed among the T1 BIBAC2-F20 and BIBAC2-F22 transgenic plants. When the ARC1 gene was transformed into BIBAC2-F20 or BIBAC2-F22 plants, the resulting BIBAC2-F20-ARC1 and BIBAC2-F22-ARC1 Communicated by G. Haughn Y.-M. Bi á N. BrugieÁre á Y. Cui á S. J. Rothstein Department of Molecular Biology and Genetics, University of Guelph, Guelph, Ontario, N1G 2W1 Canada D. R. Goring Biology Department, York University, 4700 Keele Street, North York, Ontario, M3J 1P3 Canada S. J. Rothstein (&) Department of Agronomic Traits, Pioneer Hi-Bred International Inc., P.O. Box 552, Johnston, IA 50131, USA e-mail: rothsteinsj@phibred.com; Fax: +1-515-334-4778 plants still set seeds normally, and no rejection response was observed when self-incompatible B. napus W1 pollen was placed on BIBAC2-F20-ARC1 or BIBAC2-F22ARC1 Arabidopsis stigmas. Taken together, our results suggest that complementing Arabidopsis genome with Brassica SLG, SRK and ARC1 genes is unlikely to be suf®cient to transfer the SI phenotype. Key words Self-incompatibility á SLG (S locus glycoprotein) á SRK (S locus receptor kinase) á ARC1 (Arm repeat containing) á Transgenic Arabidopsis Introduction Self-incompatibility (SI) is one of the mechanisms present in ¯owering plants that prevents self-fertilization and promotes out-crossing. In Brassica, SI is controlled genetically by multiple alleles of the S locus, and is sporophytic in nature, in that the pollen phenotype is determined by the parental genotype (Dodds et al. 1996). Several S locus genes have been discovered, and there is evidence that two of these are required for the SI phenotype. They encode, respectively, an S locus glycoprotein (SLG) and a plasma membrane-spanning receptor protein kinase (SRK). Both genes are expressed speci®cally in the stigma papillae cells and they are thought to be responsible for the female side of the SI phenotype when the communication between pistil and pollen begins (Nasrallah and Nasrallah 1993; Nasrallah et al. 1994a). The expression of SLG and SRK is necessary for the SI function, as plants carrying mutated or down-regulated SLG or SRK genes are self-fertile (Nasrallah et al. 1992; Goring et al. 1993; Nasrallah et al. 1994b; Conner et al. 1997; Stahl et al. 1998). The current model for SI in Brassica proposes that the pollen-borne ligand interacts with SLG and SRK, activates the SRK protein kinase and thus triggers a signal cascade that eventually leads to the rejection of self-pollen (Nasrallah et al. 1994a). According to the model, at least one gene required for the SI phenotype on the male side 649 should be encoded in the S locus complex. Although S locus genes that are speci®cally expressed in the anther have been isolated, such as SLL1 and SLA (Boyes and Nasrallah 1995; Yu et al. 1996), they do not ful®ll all the requirements that one would expect for the male determinant (Yu et al. 1996; Pastuglia et al. 1997). Very recently, a new gene named SCR (S locus cysteine-rich) was isolated in Brassica (Schopfer et al. 1999). It is encoded at the S locus and is a highly polymorphic, anther-expressed gene. Functional studies proved that it is necessary and suf®cient for determining pollen SI speci®city, suggesting that it is a ligand for the stigmatic S receptor complex. Meanwhile, in an attempt to dissect the SRK-mediated signal transduction pathway, an ARC1 (Arm Repeat Containing) gene was isolated by employing the yeast two-hybrid system. It encodes a protein that interacts speci®cally with the SRK kinase domain, and its expression is restricted to the stigma, the site of the SI response (Gu et al. 1998). In addition, down-regulation of ARC1 mRNA levels in transgenic plants that express ARC1 antisense RNA is correlated with a partial breakdown of SI, providing evidence that ARC1 is a positive effector of this response (Stone et al. 1999). Recently, a fosmid contig of 65 kb from a functional S-haplotype (B. napus W1 line) was isolated and analyzed (Cui et al. 1999). In our preliminary studies on transgenic B. napus plants, the 40-kb fragments (from fosmid F20 or F22) each appeared to be capable of conferring the SI female phenotype (Cui et al. 2000). In this work, we attempted to transform these SLG/SRKspanning regions into Arabidopsis, based on the following considerations. First, the out-crossing Brassica and the self-fertilizing Arabidopsis belong to the same crucifer family. A high-resolution comparative analysis of the organization of the S locus region in one genotype of B. campestris (S8 haplotype) and a region of the Arabidopsis genome has already been conducted by Conner et al. (1998). The Arabidopsis region was identi®ed as homologous to the Brassica S locus and their results revealed a high degree of microsynteny between the Brassica S locus region and its homolog in Arabidopsis, with the notable exception that sequences related to Brassica SI genes were missing in the Arabidopsis genome (Conner et al. 1998). Thus, by addressing whether these Brassica SI components could transfer the phenotype into Arabidopsis, we were hoping to shed some light on the mechanisms underlying transitions in mating systems in this crucifer family. Second, the life cycle of Arabidopsis is signi®cantly shorter than that of Brassica, so that further investigations could be done considerably more quickly if an interesting change in phenotype was observed in the transgenic plants. Therefore, we transformed Arabidopsis with the genomic fragment containing the SLG and SRK genes from this 910 S-haplotype (B. napus W1 line) and with the Brassica ARC1 gene, and analyzed the resulting transgenic plants for the expression of the Brassica genes as well as examining them for any changes in phenotype. Materials and methods Vector constructs and Agrobacterium strains used for plant transformation F20 and F22 were identi®ed from a fosmid library (Cui et al. 1999). The F20, F22 and BIBAC2 (Hamilton 1997) DNAs were prepared using a Qiagen kit. NotI digestion released the F20 or F22 insert. After pulsed ®eld gel electrophoresis (PFGE), the 40-kb insert band was excised from the agarose gel and subjected to digestion with GELase (Epicentre). The BIBAC2 vector was digested with NotI and dephosphorylated with shrimp alkaline phosphatase (Epicentre). Aliquots (100 ng) of F20 or F22 insert were co-precipitated with 40 ng of NotI-digested, dephosphorylated BIBAC2 vector. The precipitates were dissolved in 20 ll of distilled water. Ligation was carried out under standard conditions and the ligated DNA was electroporated into E. coli strain DH10B (GIBCO-BRL Life Technologies). The resulting construct (pBIBAC2-F20 or pBIBAC2-F22) was introduced into the Agrobacterium strain COR338 (Hamilton 1997) by triparental mating (Draper et al. 1988). COR338 is the Agrobacterium strain GV3101 (Koncz and Schell 1986) containing the plasmid pCH32, which carries the extra virulent genes required for the transfer of large fragments (Hamilton et al. 1996; Hamilton 1997). After several generations, Southern hybridization was performed to con®rm that the plasmid was stably maintained in COR338 (data not shown). The resulting Agrobacterium strains, pBIBAC2-F20/COR338 and pBIBAC2F22/COR338, were used for Arabidopsis transformation. The transformation vector carrying the ARC1 sense cDNA under the direction of the SLR1 promoter was introduced into Agrobacterium strain GV2260 (Deblaere et al. 1985) by triparental mating (Draper et al. 1988). Arabidopsis transformation and screening for transgenic plants Transgenic Arabidopsis plants of ecotype Columbia were generated by using the A. tumefaciens-mediated whole-plant in®ltration protocol (Bechtold et al. 1993), except that ¯owers were dipped for 6 min in the in®ltration medium supplied with Silwet L-77 (Lehle Seeds) instead of using vacuum in®ltration. Seeds were harvested and then germinated on germination medium (1/2 MS, 10 g/l sucrose, pH 5.8; Clarke et al. 1992) containing 50 mg/l kanamycin for selection. One week later, kanamycin-resistant seedlings were transferred into soil. Southern analysis Genomic DNA was extracted from leaf tissues of transgenic plants and non-transformed control plants using the DNA extraction kit Phytopure (Amersham). Aliquots (1 lg) of DNA were digested with either EcoRI or NotI. EcoRI-digested DNA was fractionated on a 0.7% agarose gel and NotI-digested DNA was fractionated by PFGE. The DNA was transferred to a nylon membrane (Boehringer Mannheim) and probed with the DIG-labeled SLG cDNA (for EcoRI digestion) or with the radioactively labeled SLG and SRK cDNAs (for NotI digestion). Hybridizations were carried out under standard conditions and ®lters were washed twice at 65 °C with 0.1 ´ SSC, 0.1% SDS for 20 min (Sambrook et al. 1989). Detection of the signal from the DIG probe was done according to the manufacturer's (Boehringer Mannheim) protocol. Northern analysis Total RNA was extracted according to Verwoerd et al. (1989) from transformed and untransformed Arabidopsis ¯ower buds or from W1 stigmas. Aliquots of total RNA from Arabidopsis (15 lg) and from W1 stigmas were loaded and fractionated on formaldehyde gels as described in BrugieÁre et al. (1999), and transferred to nylon 650 ®lters for hybridization. Probes were prepared using a randomprimer DNA labeling kit (Boehringer Mannheim). Hybridization was carried out under standard conditions and ®lters were washed under the same conditions as for Southern analysis, described above. molecular-weight T-DNAs into plants (Hamilton 1997). The F20 and F22 inserts were each cloned into BIBAC2, and the resulting pBIBAC2-F20 and pBIBAC2-F22 (Fig. 1) were individually transformed into A. tumefaciens strain COR338 (see Materials and methods). Pollination assay Arabidopsis pollen or Brassica pollen was placed on Arabidopsis stigmas and allowed to develop overnight before the pistils were removed. These were ®xed in a mixture of 4% formaldehyde in 1 ´ PBS for 2 h at room temperature (HuÈlskamp et al. 1995). Following two washes in 1 ´ PBS, the pistils were placed in 4 M NaOH for 10 min to soften the tissue before being squashed in a drop of 0.05% aniline blue in 70 mM sodium phosphate buffer pH 8.0. Squashes were examined using a ¯uorescence microscope. Results and discussion Construction of pBIBAC2-F20 and pBIBAC2-F22 for Arabidopsis transformation Fosmid clones, F20 and F22, isolated from a fosmid library of B. napus W1 genomic DNA (Cui et al. 1999) were used in this study. As shown in Fig. 1, the F20 or F22 inserts both contain the SLG and SRK genes, which are missing from the region of the Arabidopsis genome that is otherwise homologous to the Brassica S locus. The F20 insert carries more DNA downstream of the SRK and F22 includes the region upstream from the SLG. Detailed sequence analysis of these two fragments was done and no obvious additional S-genes were identi®ed (Cui et al. 1999). Since the F20 and F22 inserts both span the SLG and SRK region, which is absent in the Arabidopsis genome, we wished to determine whether these fragments might be suf®cient to transfer the SI phenotype. The binary-BAC (BIBAC) vectors were constructed for the purpose of transferring high- Fig. 1 Schematic diagram of the T-DNA region of the plasmids pBIBAC2-F20 and pBIBAC2-F22. The F20 or F22 insert was cloned into BIBAC2 at the NotI site to form pBIBAC2-F20 and pBIBAC2F22. Both inserts are about 40 kb long. EcoRI digestion can release a 25-kb fragment from F22 and a band of variable size from F20 (depending on the insertion site) that can be detected by hybridization with the SLG gene Identi®cation of transgenic BIBAC2-F20 and BIBAC2-F22 Arabidopsis Agrobacterium-mediated in planta transformation (see Materials and methods) resulted in 19 kanamycinresistant plants for the pBIBAC2-F20 construct and 18 for the pBIBAC2-F22 construct after screening about 80,000 and 85,000 seeds, respectively. The transformation frequency seems to be 5±10 times lower than when this method is used for transformation of small fragments. The transgenic nature of these plants was con®rmed by GUS histochemical assay, PCR (data not shown) and by Southern analysis (Fig. 2). Genomic DNA extracted from two randomly selected transgenic lines (one for each construct) and a non-transformed control plant was digested with EcoRI. As expected, a 25-kb band from the pBIBAC2-F22 construct and a band smaller than 25 kb from the pBIBAC2-F20 construct were detected with the SLG probe (Fig. 2a). Since transfer of the T-DNA is initiated at the right border and ends at the left border and the nptII gene lies at the end of the left border, it is very likely that the entire TDNA region was present in kanamycin resistant transgenic Arabidopsis. It was later con®rmed by PFGE blot analysis that the inserts of fosmid clones were transferred into Arabidopsis intact. As shown in Fig. 2b, genomic DNA isolated from two randomly selected transgenic lines and a control plant was digested with NotI and the whole 40-kb insert was released. In both Southerns, no signal was obtained from the non-transformed control plant. Perhaps due to the large size of the insert, all the transgenic plants have a single insertion since they all showed kanamycin resistance with a segregation ratio around 3:1 (data not shown). Fig. 2a, b Southern analysis of transgenic BIBAC2-F20 and BIBAC2-F22 plants. a Genomic DNA extracted from a wild-type (wt) plant or transgenic plant (t-1 from BIBAC2-F22 and t-2 from BIBAC2-F20) was digested with EcoRI and probed with DIG-labeled SLG cDNA. b Genomic DNA extracted from a wild type (wt) plant or transgenic plant (t-3 from BIBAC2-F20 and t-4 from BIBAC2F22) was digested with NotI and probed with 32P-labeled SLG and SRK cDNAs 651 Phenotype of the transgenic plants SI in Brassica is controlled sporophytically; hence, if Brassica SI genes are the only missing components in Arabidopsis, we should expect to see an SI phenotype in the T1 transgenic Arabidopsis plants. However, the T1 transgenic plants (37 in total for two constructs) were phenotypically normal and set seeds well, apart from three mutant plants. Among these three plants, one was derived from the pBIBAC2-F20 construct and two from the pBIBAC2-F22 construct. The plant transformed with the pBIBAC2-F20 construct grew as vigorously as wild-type plants, but it had very small siliques and the seed yield was only 10% of the wild type. It was excluded later that the phenotype of this mutant plant might be SI-related because it was found that the mutant phenotype was not co-segregating with the transgenes. The other two mutant plants from the pBIBAC2-F22 transformation were sterile so that we were unable to obtain any descendants for further characterization. A second transformation experiment was performed with the pBIBAC2-F22 construct. Thirty-®ve kanamycin-resistant plants were generated after screening approximately 200,000 seeds. Apart from one plant which appeared unhealthy and died eventually, the remaining 34 plants were all phenotypically normal and set seeds like the wild type. Expression of Brassica SI genes in transgenic plants and expression of the endogenous AtS1 gene Since no SI phenotype was observed in the transgenic plants, it was important to determine whether the Brassica SI genes were expressed properly in the transgenic Arabidopsis plants. Northern analysis was performed, and the 1.6-kb transcript corresponding to the introduced SLG gene and the 2.8-kb transcript corresponding to the introduced SRK gene were detected in the transgenic ¯ower buds, but not in the buds of a nontransformed control plant (Fig. 3). The expression level in Arabidopsis was slightly lower than that in the W1 control, which may be due to the different materials used for RNA extraction (stigmas for W1 and buds for Arabidopsis). To determine whether the expression pattern of these two genes was still tissue speci®c, RNA was extracted from leaf tissues and ¯ower buds, and hybridized with the SLG and SRK genes. The expression of these two genes was limited to the buds, as in B. napus (data not shown). Four genes have been isolated from Arabidopsis based on sequence homology with SLG and SRK probes (Dwyer et al. 1992, 1994; Tobias et al. 1992). Among these, the three SRK-like genes ARK1, ARK2 and ARK3 are expressed in vegetative tissue. The fourth gene AtS1 is a SLG-like gene and is speci®cally expressed in reproductive tissues (Dwyer et al. 1992). The expression of AtS1 was checked to determine if its expression was altered by the transgenes. RNA extracted from wild-type Fig. 3 Northern analysis of SLG and SRK genes. Total RNA was extracted from B. napus W1 stigmas (W1), wild-type Arabidopsis ¯ower buds (wt) and buds of various transgenic BIBAC2-F20 plants (a) (F20-1, 2, 5, 8, 11 and 20) or BIBAC2-F22 plants (b) (F22-2, 6, 7, 10, 11). Aliquots of RNA (15 lg for Arabidopsis samples and 4 lg for W1) were loaded and hybridized with SLG and SRK cDNAs. Both blots were re-hybridized with the 18S rRNA gene isolated from B. napus to show that equal amounts of Arabidopsis samples had been loaded plants and two transgenic plants were hybridized with the SLG probe and re-probed with an AtS1 probe. An SLG signal was obtained only from transgenic plants but AtS1 signal was present in both wild-type and transgenic samples (Fig. 4). The same results were obtained from other transgenic lines (data not shown), indicating that there was no change in the expression of the Arabidopsis AtS1 gene. Transformation of the Brassica ARC1 gene into BIBAC2-F20 or BIBAC2-F22 Arabidopsis Despite the fact that the Brassica SI genes were well transcribed in the transgenic Arabidopsis buds, no SI phenotype was detected. This implies that (an)other component(s) required for the SI response is (are) absent in the Arabidopsis genome. The ARC1 gene was isolated from Brassica through the use of the yeast two-hybrid system (Gu et al. 1998). Later, in vivo functional assays demonstrated that it is indeed one of the components needed in the signal transduction pathway leading to the rejection of self-pollen in Brassica (Stone et al. 1999). Since no closely related ARC1 homologs have been identi®ed in the Arabidopsis genome (data not shown), the ARC1 gene was transformed into Arabidopsis and introduced into the BIBAC2-F20 or BIBAC2-F22 transgenic plants via genetic crosses. ARC1 was cloned 652 Fig. 4 Northern analysis of AtS1 expression. Total RNA extracted from wild-type Arabidopsis ¯ower buds (wt) and transgenic buds (F20-2, F22-10) were hybridized with SLG cDNA and subsequently with an AtS1 probe. Total RNA stained with ethidium bromide is shown at the bottom to demonstrate the approximately equal loading of the total RNA into a binary vector in the sense orientation, driven by the SLR1 (S locus related) promoter (Hackett et al. 1996). The SLR1 gene also encodes a secreted glycoprotein and belongs to the same gene family as the SLG gene, although it is not located at the S locus (Lalonde et al. 1989; Hinata et al. 1995). Nevertheless, SLR1 shows the same developmental pattern of expression as the SLG gene during ¯ower maturation (Umbach et al. 1990). The level of ARC1 expression increased as ¯ower buds developed and reached its highest level in the large buds (6±7mm; Gu et al. 1998), which is identical to the timing of SLG expression (Goring and Rothstein 1992). Flower buds were harvested from transgenic plants, which were identi®ed as being kanamycin resistant and carried the T-DNA integrated at a single locus, to determine the expression level of the ARC1 gene. As shown in Fig. 5, ARC1 was expressed in most transgenic lines. Pollen from transgenic lines expressing relatively high levels of ARC1 (ARC1-2 And ARC1-12) was used to pollinate stigmas from BIBAC-F20 or BIBAC2-F22 Fig. 6a, b Germination of Arabidopsis and Brassica pollen on transgenic Arabidopsis stigmas. a Stigmas of transgenic Arabidopsis pollinated with Arabidopsis pollen. b Stigmas of transgenic Arabidopsis pollinated with B. napus W1 pollen. Notice that the Brassica pollen is bigger and the pollen tubes are fatter than those from Arabidopsis. Both pictures are shown at the same magni®cation. Bar 0.05 mm Fig. 5 Northern analysis of ARC1 gene. Total RNA extracted from B. napus W1 stigmas (W1), wild.type Arabidopsis ¯ower buds (wt) and buds from various transgenic ARC1 plants (ARC1±2, 5, 6, 10, 12, 18, 21) were hybridized with the ARC1 coding region. Total RNA stained with ethidium bromide is shown at the bottom to demonstrate the approximately equal loading of the Arabidopsis samples transgenic plants. PCR assays were used to detect the presence of both the ARC1 gene and the SLG/SRK genes. Pollination analysis of BIBAC2-F20-ARC1 and BIBAC2-F22-ARC1 transgenic plants The BIBAC2-F20-ARC1 or BIBAC2-F22-ARC1 transgenic plants still set seeds well. When the transgenic Arabidopsis plants were fertilized with self-pollen, the pollen tubes grew very well (Fig. 6a). Thus, even with the expression of ARC1, no SI reaction seemed to have occurred. Results obtained with transgenic Brassica plants carrying the 40-kb fragment (from F20 or F22) showed that this region is suf®cient to confer the female part of the SI phenotype, but not the male part (Cui et al. 2000). Thus, while the transgenic Arabidopsis plants are not self-incompatible, they still may contain the components necessary for the female part of the SI reaction. Since self-incompatible B. napus W1 pollen should contain the male components, we placed W1 pollen on the stigmas of BIBAC2-F20-ARC1 or BIBAC2-F22-ARC1 transgenic Arabidopsis plants to see if pollen hydration and penetration would be prevented. 653 When there is a strong SI reaction in Brassica, the pollen generally does not germinate. For those few that do, the pollen tubes usually do not penetrate the stigma surface. According to the well documented unilateral incompatibility phenomenon, pollen of the self-incompatible species could develop in the styles of the self-compatible species while inhibition would occur in the reciprocal cross (Lewis and Crowe 1958). Previous studies also indicated that Brassica pollen was able to elicit the water release response, hydrate and germinate when deposited on Arabidopsis stigmas (HuÈlskamp et al. 1995). However, when W1 pollen was placed on the stigmas of BIBAC2-F20-ARC1 or BIBAC2-F22-ARC1 transgenic plants, the SI rejection response did not occur and W1 pollen hydration and tube growth were observed (Fig. 6b), at similar levels to those seen when the pollen was placed on wild-type Arabidopsis stigmas (data not shown). Although the cellular interactions required for the initial recognition of the pollen grain by the stigmatic cell are fairly non-speci®c, no seeds would be produced, though, as the interspeci®c fertilization is blocked at a later stage (HuÈlskamp et al. 1995). In summary, we have transformed Brassica SI genes (SLG, SRK and ARC1 genes) into Arabidopsis and demonstrated that the Brassica SI genes were well transcribed in the transgenic Arabidopsis ¯ower buds. However, no SI phenotype was observed among the transgenic plants obtained. Also, no detectable difference was seen in pollen tube growth when Brassica SI pollen was placed on either transgenic or wild-type Arabidopsis stigmas. There are several conceivable reasons for the failure to transfer the SI phenotype. Arabidopsis might lack additional genes involved in the SI response or the signal transduction process leading to pollen rejection. Alternatively, some other differences in the fertilization process might be the cause. 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