Photosystem II James Barber* and Werner Kühlbrandt

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469
Photosystem II
James Barber* and Werner Kühlbrandt†
Electron crystallography of photosystem II has revealed the
location of important subunits and photoactive pigment
molecules within this large membrane protein complex. It has
also demonstrated a close evolutionary link among all types of
photosynthetic reaction centres.
Addresses
*Biochemistry Department, Imperial College of Science, Technology
and Medicine, London SW7 2AY, UK; e-mail: j.barber@ic.ac.uk
†Max-Planck-Institut für Biophysik, Heinrich-Hoffmann-Str. 7, 60528
Frankfurt am Main, Germany; e-mail: kuehlbrandt@biophys.mpg.de
Current Opinion in Structural Biology 1999, 9:469–475
http://biomednet.com/elecref/0959440X00900469
© Elsevier Science Ltd ISSN 0959-440X
Abbreviations
2D
two-dimensional
3D
three-dimensional
LHC
light-harvesting complex
OEC
oxygen-evolving complex
Phe
pheophytin
PSI
photosystem I
PSII
photosystem II
RC
reaction centre
Introduction
Photosystem II (PSII) is a multisubunit membrane protein
complex that catalyses the light-induced splitting of water,
thereby sustaining aerobic life on our planet. An essential
prerequisite for understanding and, possibly, mimicking
the molecular mechanisms of the reactions involved in this
process is a detailed understanding of the three-dimensional (3D) structure of the participating macromolecular
subunits. Solving the structure of PSII is, today, one of the
greatest challenges in structural biology and photosynthesis research. This paper reviews some important advances
that have been recently made towards this goal.
Photosystem II subunits
The PSII complex consists of approximately 25 different
proteins [1], referred to as PsbA–W or Lhcb1–6, according
to the genes that encode them. More than 20 of these are
integral membrane proteins, with an estimated total of
about 50 transmembrane helices. At the heart of this multisubunit complex is the PSII reaction centre (RC),
composed of the D1 and D2 proteins. These two proteins
bind the cofactors that are involved in the light-driven primary and secondary electron transfer processes [2]. Upon
illumination, a special chlorophyll a absorbing at approximately 680 nm (known as P680) is initially excited to its
first singlet state and rapidly donates the energised electron
to a pheophytin (Phe) molecule to form the radical pair
state P680•+Phe•−. Phe•− then passes an electron to a
bound plastoquinone molecule (QA) within 200 ps, while
P680•+ is reduced in nanoseconds by a redox active tyrosine
(YZ) at position 161 in the D1 protein. Within milliseconds,
QA− reduces a second plastoquinone, QB, and YZ•+ is
reduced by a four-atom manganese oxide (Mn4) cluster
located on the lumenal surface of the PSII complex. These
reactions result in a charge separation across the thylakoid
membrane, with the electron donors (P680, YZ and Mn4)
and electron acceptors (Phe, QA and QB) located towards
the lumenal (inner) and stromal (outer) surfaces, respectively. After accepting two electrons, the fully reduced QB
plastoquinone is released from its binding site on the D1
protein and is replaced by a fully oxidised plastoquinone
molecule derived from a pool of these molecules that is present in the lipid matrix of the membrane. Therefore,
overall, PSII functions as a light-driven water/plastoquinone oxidoreductase.
Water is a very stable compound and its oxidation by light
requires a redox potential of approximately 1200 mV, higher than any other reaction in biology. Water oxidation
occurs at the Mn4 cluster positioned at the centre of the
oxygen-evolving complex (OEC) on the lumenal surface of
PSII. The highly reactive Mn4 cluster is shielded by a
number of extrinsic proteins that are bound to the lumenal
surface of the thylakoid membrane [3]. In green plants and
algae, these OEC proteins have apparent molecular masses of 33, 23 and 17 kDa. The 33 kDa OEC protein is also
present in cyanobacteria, but the 23 and 17 kDa proteins
are replaced by other proteins in this class of oxygenic photosynthetic organism [4]. Various structural models for the
Mn4 cluster have been suggested over the years, but, in
the absence of a high-resolution structure, these remain
speculative [5,6]. Consequently, there is, as yet, no agreed
mechanism for biological water oxidation and oxygen evolution, although there is no shortage of postulates [7•,8•].
Surrounding the D1 and D2 RC proteins are the other
PSII subunits. These include the chlorophyll-a-binding
proteins, CP43 and CP47, which, together, act as an internal light-harvesting system that transfers excitation energy
to the RC [9]. The RC proteins, together with the OEC,
the CP43 and CP47 internal antenna, cytochrome b559
and the minor subunits, form the PSII core complex. In
higher plants and green algae, an additional outer lightharvesting system is composed of proteins that bind both
chlorophyll a and b (Lhcb proteins), of which there are six
types [10,11]. Lhcb1–3 make up the majority of the lightharvesting system and are known as LHCII
(light-harvesting complex II). LHCII is organised as a
trimer and its structure has been solved to 3.4 Å [12]. The
other chlorophyll-a/b-binding proteins, Lhcb4, Lhcb5 and
Lhcb6, also known as CP29, CP26 and CP24, respectively,
bind less chlorophyll b than LHCII and are thought to
exist as monomers. They seem to function as a conduit for
the transfer of excitation energy from the LHCII trimers to
470
Membrane proteins
Figure 1
photoinduced damage [15•]. The remaining proteins of
the PSII complex have molecular masses less than 10 kDa
and are predicted to have only one transmembrane segment [1]. They seem to bind no pigments or cofactors and
their functions are unknown.
A remarkable feature of PSII is not only its ability to catalyse the light-driven oxidation of water, but also the fact
that one of its components undergoes constant and rapid
turnover when illuminated. As a result of the high redox
potential of P680•+, the D1 protein itself is prone to photooxidation. The damaged protein is degraded and replaced
within a half-time typically of 30 min [16,17]. The
turnover is restricted only to the D1 protein and raises
interesting questions about the repair mechanism in relation to the assembly and disassembly of the whole system
that is unique to PSII.
Although a high-resolution structure of PSII has not yet
been determined, considerable progress towards this goal
has been made recently by cryoelectron microscopy of
two-dimensional (2D) crystals. Various forms of 2D crystals
of PSII cores have been reported [18,19,20•], but, so far,
only the crystalline sheets of CP47–RC subcores
[21,22•,23,24••] and of PSII cores [25••] have yielded structures at a level of resolution that reveals the secondary
structure of the membrane region [23,24••,25••].
Structure of the CP47–RC subcore complex
To date, the highest resolution structure available for PSII
is of a biochemically stable part of the PSII core complex
consisting of the D1 and D2 proteins, CP47, cytochrome
b559 and some of the low-molecular weight proteins. The
structure of this CP47–RC subcore complex was obtained
by electron crystallography at 8 Å [23,24••].
Three-dimensional map of the monomeric PSII RC complex, contoured
at 2.5 standard deviations with a 1 Å sampling interval. The cylinders
are colour coded according to the protein to which they were
assigned: D1, yellow; D2, orange; CP47, red; others, blue. Map
contours are white. (a) Side view (lumenal surface below), with
cylinders indicating the positions of transmembrane helices. (b) View
from the lumenal side, with fitted cylinders showing the 23 membranespanning helices in the PSII monomer. Reproduced with permission
from [24••].
the RC via CP47 and CP43 [13•]. The PsbS protein has
some homology to the Lhcb proteins and may play a role
as a chlorophyll carrier [14]. The PsbE and PsbF proteins
are the haem-binding α and β subunits of cytochrome
b559. This cytochrome is located very close to the D1 and
D2 proteins and may function to protect the RC against
Figure 1 shows a side view of the map (Figure 1a) indicating that the density is concentrated in a slab of
approximately 45 Å. As shown in Figure 1b, this density
corresponds to 23 transmembrane helices. The two
groups of five helices (coloured yellow and orange in
Figure 1), which, in projection, form a roughly S-shaped
feature with near twofold symmetry, were assigned to the
D1 and D2 proteins. This assignment was based on predictions that these proteins are structurally related to the
L and M subunits of the purple bacterial RC [26], which,
together, have a similar S shape in projection. The adjacent group of three pairs of helices, coloured red in
Figure 1, was assigned to CP47 on the basis of predictions
that this protein has six transmembrane helices [9]. The
remaining seven transmembrane helices, shown in blue,
could not be specifically assigned, but probably belong to
the low-molecular weight proteins PsbI, PsbK, PsbL,
PsbT and PsbW, as well as to the α and β subunits of
cytochrome b559 [27•]. Most of the helices shown in
Figure 1a are 30–36 Å long, as expected for transmembrane-spanning helices, but two helices belonging to
CP47 extend a further 10–15 Å on the lumenal side and
Photosystem II Barber and Kühlbrandt
471
Figure 2
Pigments in the CP47–RC subcore complex. (a) View of the D1–D2 map
region from the lumenal side, with fitted transmembrane helices (yellow
and orange), chlorophylls (green discs, diameter 6.6 Å) and pheophytins
(brown discs). (b) Side view of the D1–D2 map region. (c) View from the
lumenal side of the CP47 map region, with transmembrane helices (red)
and chlorophylls (green). Reproduced with permission from [24••].
are probably part of the large loop that joins helices 5 and
6 in CP47 [9].
The lumenal ends of helix 3 in the D1 and D2 proteins
define the region in which the redox active tyrosines, YZ
and YD, respectively, are located [28,29]. As only YZ is
actively involved in water oxidation, this region of the D1
protein is likely to be the binding site of the Mn4 cluster;
there is some direct experimental evidence for this [30].
The space between the 10 helices of the D1–D2 heterodimer contains several small regions of density with
roughly oblate ellipsoid shape. These densities were
attributed to the tetrapyrote head groups of chlorophyll
and Phe (see Figure 2a,b), based both on the overall
resemblance of the heterodimer to the bacterial RC and on
the earlier 6 Å structure of LHCII, which contained similar chlorophyll densities [31]. The arrangement of these
tetrapyrroles is reminiscent of the organisation of the
cofactors in the RC of purple bacteria [32]; however, there
does not seem to be a ‘special pair’ of chlorophylls in PSII.
The special pair functions as the primary electron donor in
the purple bacterial RC, but, in PSII, the corresponding
chlorophylls were spaced further apart (approximately
11 Å compared with 7.6 Å). As yet, the precise distance
and orientation of the two chlorophylls is unknown, but it
is likely that the radical cation P680•+ is located on the
chlorophyll molecule that is positioned close to YZ on the
D1 protein [33•]. Another approximately 14 similar densities in the space between the six helices of CP47 were
attributed to chlorophyll a, in agreement with biochemical
data suggesting a similar number (see Figure 2c) [34].
Structure of the photosystem II core complex
The 2D crystals of CP47–RC used to obtain the structures
shown in Figures 1 and 2 were devoid of the OEC.
Recently, cryoelectron crystallography has been conducted
on 2D crystals of a PSII core complex that maintains the
ability to oxidise water [25••]. This complex contained, in
addition to those subunits of the CP47–RC subcore, the
33 kDa extrinsic protein, the core antenna CP43 and some
other low-molecular weight proteins, including PsbH. As
the PSII core complex can catalyse water oxidation, it also
binds the Mn4 cluster. To date, a projection map at about
9 Å has been obtained and is shown in Figure 3a. The complex crystallises as a dimer of p2 symmetry. The features of
the 8 Å projection map of CP47–RC [23] were reproduced
in the map of the core dimer (Figure 3), both before and
after symmetrisation. With this level of reliability, it has
been possible to identify densities attributed to the six
helices of CP43 that are homologous to those of CP47 [35].
As Figure 3b,c shows, these densities are related by a
twofold rotation about the centre of the D1–D2 heterodimer. Other additional densities not observed in the
CP47–RC subcore are also apparent, particularly in the
region that interconnects the two RCs (central blue regions
472
Membrane proteins
Figure 3
Projection maps of the OEC dimer of PSII. (a) Unsymmetrised
projection map of the oxygen-evolving PSII core complex viewed from
the lumenal side. The complex is dimeric and is outlined in white.
(b) p2-symmetrised map derived from two merged lattices represented
in grey scale with overlaid contours. The CP47–RC monomer
projection map taken from [23] is identified by red contours. (c)
Localisation of the D1, D2, CP47 and CP43 proteins and some other
subunits into the projection map of the PSII core dimer. The helix
representation of the CP47–RC complex components and CP43 is
based on the 3D map in [24••]. The colour coding is as in Figure 1,
with the additional use of green for the helices of CP43. The two blue
densities at the centre of the dimer indicate proteins that are additional
to those found in the CP47–RC structure.
CP24 and some LHCII can be isolated by mild detergent
treatment of thylakoid membranes [36,37•]. These supercore complexes not only maintain their in vivo dimeric
arrangement, but also have an intact OEC [38•]. Singleparticle analyses of PSII supercores imaged by electron
cryomicroscopy will make an important contribution to
our understanding of the overall structure and organisation of PSII in the thylakoid membrane [39]. At present,
projection maps derived by image processing of negatively stained PSII preparations [38•,39,40,41•,42•] provide a
preliminary framework at limited resolution in which the
higher resolution structures of PSII components can be
incorporated. A well-characterised LHCII–PSII supercore complex [39] has dimensions of approximately
17 nm × 30 nm and a molecular mass of about 1000 kDa.
Biochemical analysis shows that it binds one LHCII
trimer and one copy each of CP29 and CP26 per RC [36].
Top and side projections of this supercore complex are
shown in Figure 4a,b. Comparison with the 9 Å projection
map of the PSII core [25••] indicates unambiguously the
location of the core dimer in the centre of the supercore
complex (Figure 4a). Superimposing onto this map the
structure of the 8 Å 3D map of the CP47–RC subcore
[24••], one can derive the approximate positions of the
transmembrane helices of the D1, D2 and CP47 proteins
and, by analogy, of the CP43 protein within the supercore
complex [43•]. The remaining density then must represent the outer light-harvesting system, containing the
chlorophyll-a/b-binding proteins CP26 and CP29, and
one LHCII trimer, which is probably located at the
extreme ends of the supercore. The side projection
(Figure 4b) clearly shows the OEC extrinsic proteins,
which, until a better resolution structure is available, can
be tentatively related to the location of the underlying
intrinsic transmembrane helices.
in Figure 3c). The origin of these densities will become
clearer when a 3D map is constructed, but it may reflect the
presence of the PsbH and extrinsic 33 kDa proteins.
Structure of the LHCII–PSII supercore complex
PSII complexes consisting of the core complex plus the
minor chlorophyll-a/b-binding proteins CP29, CP26 and
Comparison with photosystem I and
evolutionary aspects
The structure of PSII shows interesting homology to that
of photosystem I (PSI), the other RC complex of oxygenic
photosynthetic organisms, which cooperates with PSII to
facilitate complete electron flow to NADP+. A 4 Å structure of PSI [44] has revealed that its two RC proteins (PsaA
and PsaB, each composed of 11 transmembrane α helices)
Photosystem II Barber and Kühlbrandt
473
Figure 4
Projection maps of the LHCII–PSII supercore
complex (a) Positioning of subunits within the
supercomplex. The helices of CP47, CP43
and the D1–D2 heterodimer are positioned
and coloured as in Figure 3. The organisation
of the transmembrane and surface helices of
the LHCII trimer, CP29 and CP26 is based
on structural data [12] and sequence
homologies [11]. Their positioning within the
supercore complex is based on single-particle
analyses [39] and on recent cross-linking data
[13•]. Difference mapping of negatively
stained single particles [38•,40] revealed the
position of the OEC. The LHCII–PSII
supercore complex is viewed from the lumenal
side. (b) Side view of the negatively stained
LHCII–PSII supercore complex, identifying
protrusions that represent extrinsic (ext)
proteins of the OEC.
(a)
(b)
CP26 (Lhcb5)
CP43
LHCII
(Lhcb1 and 2)
CP29 (Lhcb4)
23 and17 kDa ext
D1
D2
CP47
CP47
D2
33 kDa ext
33 kDa ext
D1
CP29 (Lhcb4)
23 and17 kDa ext
CP43
LHCII
(Lhcb1 and 2)
CP26 (Lhcb5)
Current Opinion in Structural Biology
have an inner core of 10 helices, which are arranged in an
S shape that is very much like the arrangement of the
transmembrane helices of the L and M subunits of the
bacterial RC and, therefore, like the D1 and D2 proteins.
The PSI core binds all the cofactors involved in primary
separation in this complex. Also of considerable interest
was the finding that the six transmembrane helices of
CP47 [24••] are organised in a very similar manner to that
of the six N-terminal helices of the PsaA/PsaB proteins and
this is almost certainly also true for CP43, as judged by the
recent 9 Å projection map [25••].
Overall, these structural homologies demonstrate a close
evolutionary link between the three types of RCs. A
direct structural relationship between PSII and purple
bacteria was postulated some time ago [26] and is now
confirmed [24••]. The similarity between CP47/CP43 and
the corresponding six helices of PsaA/PsaB also suggests a
common evolutionary origin [45••]. Presumably, the PSI
RC protein arose from the genetic fusion of a CP47/CP43like protein with a five-helix RC prototype. Indeed, the
most ancient photosynthetic organisms existing on earth
today, the Chloroflexaceae, have a RC that is similar to that
of purple bacteria, further supporting the idea that PSI
evolved from a PSII-type RC.
1. CP47–RC contains 23 transmembrane helices, whereas
the core complex is composed of more than 30 [24••].
2. The organisation of the 10 transmembrane helices of the
D1 and D2 proteins is very similar to that of the L and M
subunits [24••], as predicted by sequence homology [26].
3. The organisation of the transmembrane helices of
CP47 and CP43, together with those of the D1 and D2
proteins, shows striking similarities with the organisation
of the transmembrane helices of the RC of PSI
[24••,25••,35,45••].
4. The structural homologies among the different photosynthetic systems indicate a common evolutionary origin
[24••,25••,45••,46,47].
5. The primary electron donor of PSII, P680, does not
seem to comprise a special pair of excitonically linked
chlorophylls [24••], as in the RCs of purple bacteria and
PSI, suggesting that a ‘special pair’ is not an absolute
requirement for primary charge separation in photosynthetic RCs, in line with some earlier predictions[2,48,49].
Conclusions
6. Single-particle analysis of a large supercore complex has
identified the positions of the outer and inner light-harvesting proteins relative to the RC.
Although a high-resolution structure of PSII is not yet available, a number of important conclusions have emerged from
electron microscopy of 2D crystals and single particles:
7. It seems that, in its normal functional state, PSII is
dimeric. The reason for this preferred aggregation state is,
474
Membrane proteins
antenna in response to increased light intensities. Photosynth
Res 1997, 54:227-236.
as yet, unknown, but it could be related to the need to regulate the turnover of the D1 protein [50].
Acknowledgements
JB wishes to thank the Biotechnology and Biological Science Research
Council (BBSRC) for financial support and Ed Morris and Jon Nield for
preparing Figures 3 and 4. WK thanks KH Rhee for preparing Figures 1 and 2.
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