How does a single faulty gene result in the dramatic appearance of an albino animal? The albino deer has a faulty version of a key protein, an enzyme required for pigment synthesis, and this protein is faulty because the gene that codes for it contains incorrect information. GENE EXPRESSION: FROM GENE TO PROTEIN Chapter 17.1 and 17.2 CONCEPT 17.1: GENES SPECIFY PROTEINS VIA TRANSCRIPTION AND TRANSLATION The information content of DNA is in the form of specific sequences of nucleotides. The DNA inherited by an organism leads to specific traits by dictating the synthesis of proteins and RNA molecules involved in protein synthesis. Proteins are the links between genotype (what the genome says) and phenotype (what traits physically appear). Gene expression, the process by which DNA directs protein synthesis, includes two stages: transcription and translation. EVIDENCE FROM THE STUDY OF METABOLIC DEFECTS In 1902, British physician Archibald Garrod first suggested that genes dictate phenotypes through enzymes that catalyze specific chemical reactions. He thought symptoms of an inherited disease reflect an inability to synthesize a certain enzyme. • “Inborn errors of metabolism.” Linking genes to enzymes required understanding that cells synthesize and degrade molecules in a series of steps, a metabolic pathway. Archibald Garrod NUTRITIONAL MUTANTS IN NEUROSPORA: SCIENTIFIC INQUIRY George Beadle and Edward Tatum exposed bread mold to X-rays, creating mutants that were unable to survive on minimal media. Using crosses, they identified three classes of arginine-deficient mutants, each lacking a different enzyme necessary for synthesizing arginine. They developed a one gene–one enzyme hypothesis, which states that each gene dictates production of a specific enzyme. THE PRODUCTS OF GENE EXPRESSION: A DEVELOPING STORY Some proteins aren’t enzymes, so researchers later revised the hypothesis: one gene–one protein. Many proteins are composed of several polypeptides, each of which has its own gene. Therefore, Beadle and Tatum’s hypothesis is now restated as the one gene–one polypeptide hypothesis. (Multiple polypeptides can come together to form a function protein). One Gene One Polypeptide BASIC PRINCIPLES OF TRANSCRIPTION AND TRANSLATION RNA is the bridge between genes and the proteins for which they code. Transcription is the synthesis of mRNA (messenger RNA) using information in DNA. Translation is the synthesis of a polypeptide at a ribosome, using information in the mRNA. Prokaryotes Transcription and translation occur in the cytoplasm. In prokaryotes, translation of mRNA can begin before transcription has finished. mRNA is not modified. Eukaryotes Transcription occurs in the nucleus. Transcription directly produces premRNA molecules. Pre-mRNA transcripts are modified (before leaving nucleus) through RNA processing to yield the finished mRNA. Translation occurs in the cytoplasm. CENTRAL DOGMA First dubbed by Francis Crick in 1956. Some exceptions to this rule have emerged over the years (some enzymes produce DNA from RNA), but they have not invalidated this idea. In a eukaryotic cell, transcription occurs in nucleus and translation occurs in the cytoplasm. In a prokaryotic cell, transcription and translation occur in the cytoplasm. CODONS: TRIPLETS OF NUCLEOTIDES THE FLOW OF INFORMATION FROM GENE TO PROTEIN IS BASED ON A TRIPLET CODE: A SERIES OF NONOVERLAPPING, THREE-NUCLEOTIDE WORDS. During transcription, one of the two DNA strands, called the template strand, provides a template for ordering the sequence of complementary nucleotides in an RNA transcript. The template strand is always the same strand for a given gene. An mRNA molecule is complementary to its DNA template because RNA nucleotides are assembled on the template according to base-pairing rules. During translation, the mRNA base triplets, called codons, are written in the 5 to 3 direction. Codons along an mRNA molecule are read by translation machinery in the 5 to 3 direction. Each codon specifies one amino acid (one of 20). CRACKING THE CODE Of the 64 triplets, 61 code for amino acids; 3 triplets are “stop” signals to end translation. The genetic code is redundant (more than one codon may specify a particular amino acid) but not ambiguous; no codon specifies more than one amino acid. Codons must be read in the correct reading frame (correct groupings) in order for the specified polypeptide to be produced. EVOLUTION OF THE GENETIC CODE The genetic code is nearly universal, shared by the simplest bacteria to the most complex animals. Genes can be transcribed and translated after being transplanted from one species to another. CONCEPT 17.2: TRANSCRIPTION IS THE DNA-DIRECTED SYNTHESIS OF RNA RNA synthesis is catalyzed by RNA polymerase, which pries the DNA strands apart and hooks together the RNA nucleotides. • The RNA is complementary to the DNA template strand. • RNA synthesis follows the same base-pairing rules as DNA, except that uracil substitutes for thymine. Bacteria have one type of RNA polymerase. Eukaryotes have three types of RNA polymerase. The DNA sequence where RNA polymerase attaches is called the promoter; in bacteria, the sequence signaling the end of transcription is called the terminator. • The stretch of DNA that is transcribed is called a transcription unit. Overview of Transcription 1. RNA polymerase II binds, DNA unwinds, and polymerase initiates transcription. 2. Polymerase moves downstream, and mRNA elongates in the 5’3’ direction. 3. mRNA is releases and polymerase detaches. In eukaryotes, mRNA is modified before translation. In prokaryotes, mRNA moves on to translation. INITIATION OF TRANSCRIPTION Promoters signal the transcriptional start point and usually extend several dozen nucleotide pairs upstream of the start point. • A promoter called a TATA box is crucial in forming the initiation complex in eukaryotes. Transcription factors mediate the binding of RNA polymerase and the initiation of transcription. Transcription factors allow RNA polymerase to bind in correct location and orientation. Initiation of Transcription 1. Eukaryotic promoter includes TATA boxy about 25 nucleotides upstream from start. 2. Several transcription factors, one recognizing the TATA box, must bind to DNA. 3. RNA polymerase II unwinds DNA and adds complementary RNA base pairs. ELONGATION OF THE RNA STRAND As RNA polymerase moves along the DNA, it untwists the double helix, 10 to 20 bases at a time. A gene can be transcribed simultaneously by several RNA polymerases. • Increase amount of mRNA produced, which consequently increase the amount of protein produced. Nucleotides are added to the 3 end of the growing RNA molecule. TERMINATION OF TRANSCRIPTION THE MECHANISMS OF TERMINATION ARE DIFFERENT IN BACTERIA AND EUKARYOTES. In bacteria, the polymerase stops transcription at the end of the terminator and the mRNA can be translated without further modification. In eukaryotes, RNA polymerase II transcribes the polyadenylation signal sequence. This signals the binding of certain proteins. Proteins cut the RNA transcript free 0–35 nucleotides past this polyadenylation sequence.