Publications from UAB CFAR Developmental Awardees Year 2001-present 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13. 14. Ballestas ME, Kaye KM. The latency-associated nuclear antigen, a multifunctional protein central to Kaposi's sarcoma-associated herpesvirus latency. Future Microbiol. 2011;6(12):1399-413. PMID: 22122438. Bansal A, Carlson J, Yan J, Akinsiku OT, Schaefer M, Sabbaj S, Bet A, Levy DN, Heath S, Tang J, Kaslow RA, Walker BD, Ndung'u T, Goulder PJ, Heckerman D, Hunter E, Goepfert PA. CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription. J Exp Med. 2010;207(1):51-9. PMID: 20065064; PMCID: PMC2812545. Bansal A, Yue L, Conway J, Yusim K, Tang J, Kappes J, Kaslow RA, Wilson CM, Goepfert PA. Immunological control of chronic HIV-1 infection: HLA-mediated immune function and viral evolution in adolescents. AIDS. 2007;21(18):2387-97. PMID: 18025875; PMCID: PMC2268022. Bansal A, Seevers S, Mann T, Carlson J, Bet A, Zhao Q, Heath S, Heckerman D, Goepfert P, editors. Cryptic epitopes from alternative reading frames restricted by HLAs associated with a good prognosis are frequently recognized in HIV infection. AIDS Vaccine Meeting; 2011 Sept 12-15; Bangkok, Thailand. Bean SM, Chhieng DC, Roberson J, Raper JL, Broker TR, Hoesley CJ, Eltoum IA, Jin G. Analrectal cytology: correlation with human papillomavirus status and biopsy diagnoses in a population of HIV-positive patients. J Low Genit Tract Dis. 2010;14(2):90-6. PMID: 20354415. Bhaskar AM, Mehta M, Parikh P, Kumar A, Bhavesh N, Singh A. Imaging real time redox potential of mycobacterium tuberculosis using redox sensitive green fluorescent protein2013;in preparation. Bibollet-Ruche F, Gao F, Bailes E, Saragosti S, Delaporte E, Peeters M, Shaw GM, Hahn BH, Sharp PM. Complete genome analysis of one of the earliest SIVcpzPtt strains from Gabon (SIVcpzGAB2). AIDS Res Hum Retroviruses. 2004;20(12):1377-81. PMID: 15650433; PMCID: PMC2692896. Vance DE, Burrage JW. Promoting successful cognitive aging in adults with HIV: strategies for intervention. J Gerontol Nurs. 2006;32(11):34-41. PMID: 17112136. Chawla M, Parikh P, Saxena A, Munshi M, Mehta M, Mai D, Srivastava AK, Narasimhulu KV, Redding KE, Vashi N, Kumar D, Steyn AJ, Singh A. Mycobacterium tuberculosis WhiB4 regulates oxidative stress response to modulate survival and dissemination in vivo. Mol Microbiol. 2012;85(6):1148-65. PMID: 22780904; PMCID: PMC3438311. Chen RY, Accortt NA, Westfall AO, Mugavero MJ, Raper JL, Cloud GA, Stone BK, Carter J, Call S, Pisu M, Allison J, Saag MS. Distribution of health care expenditures for HIV-infected patients. Clin Infect Dis. 2006;42(7):1003-10. PMID: 16511767. Chirwa S, Mwanahamuntu M, Kapambwe S, Mkumba G, Stringer J, Sahasrabuddhe V, Pfaendler K, Parham G. Myths and misconceptions about cervical cancer among Zambian women: rapid assessment by peer educators. Glob Health Promot. 2010;17(2 Suppl):47-50. PMID: 20595342. Chou CF, Mulky A, Maitra S, Lin WJ, Gherzi R, Kappes J, Chen CY. Tethering KSRP, a decay-promoting AU-rich element-binding protein, to mRNAs elicits mRNA decay. Mol Cell Biol. 2006;26(10):3695-706. PMID: 16648466; PMCID: PMC1489004. Cole SR, Napravnik S, Mugavero MJ, Lau B, Eron JJ, Jr., Saag MS. Copy-years viremia as a measure of cumulative human immunodeficiency virus viral burden. Am J Epidemiol. 2010;171(2):198-205. PMID: 20007202; PMCID: PMC2878100. Cropsey KL, Jackson DO, Hale GJ, Carpenter MJ, Stitzer ML. Impact of self-initiated pre-quit smoking reduction on cessation rates: results of a clinical trial of smoking cessation among 15. 16. 17. 18. 19. 20. 21. 22. 23. 24. 25. 26. 27. 28. 29. female prisoners. Addict Behav. 2011;36(1-2):73-8. PMID: 20888129; PMCID: PMC3005277. Cropsey KL, McClure LA, Jackson DO, Villalobos GC, Weaver MF, Stitzer ML. The impact of quitting smoking on weight among women prisoners participating in a smoking cessation intervention. Am J Public Health. 2010;100(8):1442-8. PMID: 20558806; PMCID: PMC2901271. Cuevas JE, Vance D, Viamonte S, Lee SK, South JL. A comparison of spirituality and religiosity in older and younger adults with and without HIV (in preparation). Derdeyn CA, Decker JM, Bibollet-Ruche F, Mokili JL, Muldoon M, Denham SA, Heil ML, Kasolo F, Musonda R, Hahn BH, Shaw GM, Korber BT, Allen S, Hunter E. Envelopeconstrained neutralization-sensitive HIV-1 after heterosexual transmission. Science. 2004;303(5666):2019-22. PMID: 15044802. Derdeyn CA, Decker JM, Sfakianos JN, Zhang Z, O'Brien WA, Ratner L, Shaw GM, Hunter E. Sensitivity of human immunodeficiency virus type 1 to fusion inhibitors targeted to the gp41 first heptad repeat involves distinct regions of gp41 and is consistently modulated by gp120 interactions with the coreceptor. J Virol. 2001;75(18):8605-14. PMID: 11507206; PMCID: PMC115106. Dorak MT, Yee LJ, Tang J, Shao W, Lobashevsky ES, Jacobson LP, Kaslow RA. HLA-B, DRB1/3/4/5, and -DQB1 gene polymorphisms in human immunodeficiency virus-related Kaposi's sarcoma. J Med Virol. 2005;76(3):302-10. PMID: 15902698. Duverger A, Jones J, May J, Bibollet-Ruche F, Wagner FA, Cron RQ, Kutsch O. Determinants of the establishment of human immunodeficiency virus type 1 latency. J Virol. 2009;83(7):3078-93. PMID: 19144703; PMCID: PMC2655589. Eipers PG, Salazar-Gonzalez JF, Morrow CD. HIV gene expression from intact proviruses positioned in bacterial artificial chromosomes at integration sites previously identified in latently infected T cells. Virology. 2011;410(1):151-60. PMID: 21115184; PMCID: PMC3034240. Evans D, Maskew M, Sanne I. Increased risk of mortality and loss to follow-up among HIVpositive patients with oropharyngeal candidiasis and malnutrition before antiretroviral therapy initiation: a retrospective analysis from a large urban cohort in Johannesburg, South Africa. Oral Surg Oral Med Oral Pathol Oral Radiol. 2012;113(3):362-72. PMID: 22669142; PMCID: PMC3370659. Farhana A, Guidry L, Srivastava A, Singh A, Hondalus MK, Steyn AJ. Reductive stress in microbes: implications for understanding Mycobacterium tuberculosis disease and persistence. Adv Microb Physiol. 2010;57:43-117. PMID: 21078441. Fazeli PL, Marceaux JC, Vance DE, Slater L, Long CA. Predictors of cognition in adults with HIV: implications for nursing practice and research. J Neurosci Nurs. 2011;43(1):36-50. PMID: 21338043; PMCID: PMC3039887. Fledderman EL, Fujii K, Ghanam RH, Waki K, Prevelige PE, Freed EO, Saad JS. Myristate exposure in the human immunodeficiency virus type 1 matrix protein is modulated by pH. Biochemistry. 2010;49(44):9551-62. PMID: 20886905; PMCID: PMC3032006. Fuller MJ, Khanolkar A, Tebo AE, Zajac AJ. Maintenance, loss, and resurgence of T cell responses during acute, protracted, and chronic viral infections. J Immunol. 2004;172(7):420414. PMID: 15034033. Fuller MJ, Zajac AJ. Ablation of CD8 and CD4 T cell responses by high viral loads. J Immunol. 2003;170(1):477-86. PMID: 12496434. Fuller MJ, Hildeman DA, Sabbaj S, Gaddis DE, Tebo AE, Shang L, Goepfert PA, Zajac AJ. Cutting edge: emergence of CD127high functionally competent memory T cells is compromised by high viral loads and inadequate T cell help. J Immunol. 2005;174(10):592630. PMID: 15879083. Gamble LJ, Matthews QL. Current progress in the development of a prophylactic vaccine for HIV-1. Drug Des Devel Ther. 2010;5:9-26. PMID: 21267356; PMCID: PMC3023272. 30. 31. 32. 33. 34. 35. 36. 37. 38. 39. 40. 41. 42. 43. 44. 45. 46. 47. Ghanam RH, Fernandez TF, Fledderman EL, Saad JS. Binding of calmodulin to the HIV-1 matrix protein triggers myristate exposure. J Biol Chem. 2010;285(53):41911-20. PMID: 20956522; PMCID: PMC3009918. Goetzman ES, Tian L, Nagy TR, Gower BA, Schoeb TR, Elgavish A, Acosta EP, Saag MS, Wood PA. HIV protease inhibitor ritonavir induces lipoatrophy in male mice. AIDS Res Hum Retroviruses. 2003;19(12):1141-50. PMID: 14709251. Guo S, Xu J, Denning W, Hel Z. Induction of protective cytotoxic T-cell responses by a B-cellbased cellular vaccine requires stable expression of antigen. Gene Ther. 2009;16(11):1300-13. PMID: 19641529; PMCID: PMC2783822. Harris JB, Hatwiinda SM, Randels KM, Chi BH, Kancheya NG, Jham MA, Samungole KV, Tambatamba BC, Cantrell RA, Levy JW, Kimerling ME, Reid SE. Early lessons from the integration of tuberculosis and HIV services in primary care centers in Lusaka, Zambia. Int J Tuberc Lung Dis. 2008;12(7):773-9. PMID: 18544203. Hel Z, Stringer E, Mestecky J. Sex steroid hormones, hormonal contraception, and the immunobiology of human immunodeficiency virus-1 infection. Endocr Rev. 2010;31(1):79-97. PMID: 19903932; PMCID: PMC2852204. Indran SV, Ballestas ME, Britt WJ. Bicaudal D1-dependent trafficking of human cytomegalovirus tegument protein pp150 in virus-infected cells. J Virol. 2010;84(7):3162-77. PMID: 20089649; PMCID: PMC2838089. Jones J, Kosloff BR, Benveniste EN, Shaw GM, Kutsch O. Amphotericin-B-mediated reactivation of latent HIV-1 infection. Virology. 2005;331(1):106-16. PMID: 15582657. Jones J, Whitford W, Wagner F, Kutsch O. Optimization of HIV-1 infectivity assays. Biotechniques. 2007;43(5):589-90, 92, 94. PMID: 18072587. Jones J, Rodgers J, Heil M, May J, White L, Maddry JA, Fletcher TM, 3rd, Shaw GM, Hartman JLt, Kutsch O. High throughput drug screening for human immunodeficiency virus type 1 reactivating compounds. Assay Drug Dev Technol. 2007;5(2):181-89. PMID: 17477827. Karim AF, Chandra P, Chopra A, Siddiqui Z, Bhaskar A, Singh A, Kumar D. Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection. J Biol Chem. 2011;286(46):40307-19. PMID: 21953458; PMCID: PMC3220550. Kehn-Hall K, Guendel I, Carpio L, Skaltsounis L, Meijer L, Al-Harthi L, Steiner JP, Nath A, Kutsch O, Kashanchi F. Inhibition of Tat-mediated HIV-1 replication and neurotoxicity by novel GSK3-beta inhibitors. Virology. 2011;415(1):56-68. PMID: 21514616. Kempf MC, Jones J, Heil ML, Kutsch O. A high-throughput drug screening system for HIV-1 transcription inhibitors. J Biomol Screen. 2006;11(7):807-15. PMID: 16831859. King JR, Acosta EP. Tipranavir: a novel nonpeptidic protease inhibitor of HIV. Clin Pharmacokinet. 2006;45(7):665-82. PMID: 16802849. King JR, Wynn H, Brundage R, Acosta EP. Pharmacokinetic enhancement of protease inhibitor therapy. Clin Pharmacokinet. 2004;43(5):291-310. PMID: 15080763. Kirby TO, Allen ME, Alvarez RD, Hoesley CJ, Huh WK. High-risk human papillomavirus and cervical intraepithelial neoplasia at time of atypical squamous cells of undetermined significance cytologic results in a population with human immunodeficiency virus. J Low Genit Tract Dis. 2004;8(4):298-303. PMID: 15874876. Kravchenko J, Akushevich I, Sudenga SL, Wilson CM, Levitan EB, Shrestha S. Transitional probability-based model for HPV clearance in HIV-1-positive adolescent females. PLoS One. 2012;7(1):e30736. PMID: 22292027; PMCID: PMC3265500. Kumar A, Farhana A, Guidry L, Saini V, Hondalus M, Steyn AJ. Redox homeostasis in mycobacteria: the key to tuberculosis control? Expert Rev Mol Med. 2011;13:e39. PMID: 22172201; PMCID: PMC3241215. Kumar A, Toledo JC, Patel RP, Lancaster JR, Jr., Steyn AJ. Mycobacterium tuberculosis DosS 48. 49. 50. 51. 52. 53. 54. 55. 56. 57. 58. 59. 60. 61. 62. 63. is a redox sensor and DosT is a hypoxia sensor. Proc Natl Acad Sci U S A. 2007;104(28):11568-73. PMID: 17609369; PMCID: PMC1906723. Kutsch O, Levy DN, Kosloff BR, Shaw GM, Benveniste EN. CD154-CD40-induced reactivation of latent HIV-1 infection. Virology. 2003;314(1):261-70. PMID: 14517079. Kutsch O, Levy DN, Bates PJ, Decker J, Kosloff BR, Shaw GM, Priebe W, Benveniste EN. Bisanthracycline antibiotics inhibit human immunodeficiency virus type 1 transcription. Antimicrob Agents Chemother. 2004;48(5):1652-63. PMID: 15105117; PMCID: PMC400550. Kutsch O, Benveniste EN, Shaw GM, Levy DN. Direct and quantitative single-cell analysis of human immunodeficiency virus type 1 reactivation from latency. J Virol. 2002;76(17):8776-86. PMID: 12163598; PMCID: PMC136999. Levy DN, Aldrovandi GM, Kutsch O, Shaw GM. Dynamics of HIV-1 recombination in its natural target cells. Proc Natl Acad Sci U S A. 2004;101(12):4204-9. PMID: 15010526; PMCID: PMC384719. Lichtenstein B, Hook EW, 3rd, Grimley DM, St Lawrence JS, Bachmann LH. HIV risk among long-haul truckers in the USA. Cult Health Sex. 2008;10(1):43-56. PMID: 18038280. Matthews QL, Fatima A, Tang Y, Perry BA, Tsuruta Y, Komarova S, Timares L, Zhao C, Makarova N, Borovjagin AV, Stewart PL, Wu H, Blackwell JL, Curiel DT. HIV antigen incorporation within adenovirus hexon hypervariable 2 for a novel HIV vaccine approach. PLoS One. 2010;5(7):e11815. PMID: 20676400; PMCID: PMC2910733. Matthews QL. Capsid-incorporation of antigens into adenovirus capsid proteins for a vaccine approach. Mol Pharm. 2011;8(1):3-11. PMID: 21047139; PMCID: PMC3034826. Mestecky J, Moldoveanu Z, Smith PD, Hel Z, Alexander RC. Mucosal immunology of the genital and gastrointestinal tracts and HIV-1 infection. J Reprod Immunol. 2009;83(1-2):196200. PMID: 19853927; PMCID: PMC2802574. Mestecky J, Raska M, Novak J, Alexander RC, Moldoveanu Z. Antibody-mediated protection and the mucosal immune system of the genital tract: relevance to vaccine design. J Reprod Immunol. 2010;85(1):81-5. PMID: 20236708; PMCID: PMC2885831. Mestecky J, Jackson S, Moldoveanu Z, Nesbit LR, Kulhavy R, Prince SJ, Sabbaj S, Mulligan MJ, Goepfert PA. Paucity of antigen-specific IgA responses in sera and external secretions of HIV-type 1-infected individuals. AIDS Res Hum Retroviruses. 2004;20(9):972-88. PMID: 15585085. Moldoveanu Z, Huang WQ, Kulhavy R, Pate MS, Mestecky J. Human male genital tract secretions: both mucosal and systemic immune compartments contribute to the humoral immunity. J Immunol. 2005;175(6):4127-36. PMID: 16148163. Mugavero MJ, Amico KR, Westfall AO, Crane HM, Zinski A, Willig JH, Dombrowski JC, Norton WE, Raper JL, Kitahata MM, Saag MS. Early retention in HIV care and viral load suppression: implications for a test and treat approach to HIV prevention. J Acquir Immune Defic Syndr. 2012;59(1):86-93. PMID: 21937921; PMCID: PMC3237801. Mugavero MJ, Napravnik S, Cole SR, Eron JJ, Lau B, Crane HM, Kitahata MM, Willig JH, Moore RD, Deeks SG, Saag MS, Centers for ARNoICSCS. Viremia copy-years predicts mortality among treatment-naive HIV-infected patients initiating antiretroviral therapy. Clin Infect Dis. 2011;53(9):927-35. PMID: 21890751; PMCID: PMC3189165. Mwanahamuntu MH, Sahasrabuddhe VV, Parham GP. HPV screening for cervical cancer in rural India. N Engl J Med. 2009;361(3):305; author reply 6. PMID: 19610158. Mwanahamuntu MH, Sahasrabuddhe VV, Pfaendler KS, Mudenda V, Hicks ML, Vermund SH, Stringer JS, Parham GP. Implementation of 'see-and-treat' cervical cancer prevention services linked to HIV care in Zambia. AIDS. 2009;23(6):N1-5. PMID: 19279439; PMCID: PMC2747794. Ochsenbauer-Jambor C, Jones J, Heil M, Zammit KP, Kutsch O. T-cell line for HIV drug screening using EGFP as a quantitative marker of HIV-1 replication. Biotechniques. 64. 65. 66. 67. 68. 69. 70. 71. 72. 73. 74. 75. 76. 77. 2006;40(1):91-100. PMID: 16454046. Pal R, Venzon D, Santra S, Kalyanaraman VS, Montefiori DC, Hocker L, Hudacik L, Rose N, Nacsa J, Edghill-Smith Y, Moniuszko M, Hel Z, Belyakov IM, Berzofsky JA, Parks RW, Markham PD, Letvin NL, Tartaglia J, Franchini G. Systemic immunization with an ALVAC-HIV1/protein boost vaccine strategy protects rhesus macaques from CD4+ T-cell loss and reduces both systemic and mucosal simian-human immunodeficiency virus SHIVKU2 RNA levels. J Virol. 2006;80(8):3732-42. PMID: 16571790; PMCID: PMC1440474. Parham GP, Mwanahamuntu MH, Pfaendler KS, Sahasrabuddhe VV, Myung D, Mkumba G, Kapambwe S, Mwanza B, Chibwesha C, Hicks ML, Stringer JS. eC3--a modern telecommunications matrix for cervical cancer prevention in Zambia. J Low Genit Tract Dis. 2010;14(3):167-73. PMID: 20592550. Parham GP, Sahasrabuddhe VV, Mwanahamuntu MH, Shepherd BE, Hicks ML, Stringer EM, Vermund SH. Prevalence and predictors of squamous intraepithelial lesions of the cervix in HIV-infected women in Lusaka, Zambia. Gynecol Oncol. 2006;103(3):1017-22. PMID: 16875716; PMCID: PMC2748907. Parker SD, Hunter E. Activation of the Mason-Pfizer monkey virus protease within immature capsids in vitro. Proc Natl Acad Sci U S A. 2001;98(25):14631-6. PMID: 11724937; PMCID: PMC64733. Pereboev AV, Nagle JM, Shakhmatov MA, Triozzi PL, Matthews QL, Kawakami Y, Curiel DT, Blackwell JL. Enhanced gene transfer to mouse dendritic cells using adenoviral vectors coated with a novel adapter molecule. Mol Ther. 2004;9(5):712-20. PMID: 15120332. Price BD, Ahlquist P, Ball LA. DNA-directed expression of an animal virus RNA for replicationdependent colony formation in Saccharomyces cerevisiae. J Virol. 2002;76(4):1610-6. PMID: 11799155; PMCID: PMC135912. Qin H, Holdbrooks AT, Liu Y, Reynolds SL, Yanagisawa LL, Benveniste EN. SOCS3 deficiency promotes M1 macrophage polarization and inflammation. J Immunol. 2012;189(7):3439-48. PMID: 22925925. Qin H, Yeh WI, De Sarno P, Holdbrooks AT, Liu Y, Muldowney MT, Reynolds SL, Yanagisawa LL, Fox TH, 3rd, Park K, Harrington LE, Raman C, Benveniste EN. Signal transducer and activator of transcription-3/suppressor of cytokine signaling-3 (STAT3/SOCS3) axis in myeloid cells regulates neuroinflammation. Proc Natl Acad Sci U S A. 2012;109(13):5004-9. PMID: 22411837; PMCID: PMC3323949. Raska M, Moldoveanue Z, Czernekova L, Zachova K, Elliott MC, Hall S, Vrbkova J, Hoelscher M, Maboko L, Brown R, Tomana M, Smith PD, Mestecky J, Novak J. Differential glycosylatoin of gp120 affects the recognition by specific antibodies and HIV-1 infectivity (in preparation). Sabbaj S, Heath SL, Bansal A, Vohra S, Kilby JM, Zajac AJ, Goepfert PA. Functionally competent antigen-specific CD127(hi) memory CD8+ T cells are preserved only in HIVinfected individuals receiving early treatment. J Infect Dis. 2007;195(1):108-17. PMID: 17152014. Sahasrabuddhe VV, Mwanahamuntu MH, Vermund SH, Huh WK, Lyon MD, Stringer JS, Parham GP. Prevalence and distribution of HPV genotypes among HIV-infected women in Zambia. Br J Cancer. 2007;96(9):1480-3. PMID: 17437020; PMCID: PMC2360194. Samal AB, Ghanam RH, Fernandez TF, Monroe EB, Saad JS. NMR, biophysical, and biochemical studies reveal the minimal Calmodulin binding domain of the HIV-1 matrix protein. J Biol Chem. 2011;286(38):33533-43. PMID: 21799007; PMCID: PMC3190893. Shrestha S, Wiener HW, Aissani B, Song W, Shendre A, Wilson CM, Kaslow RA, Tang J. Interleukin-10 (IL-10) pathway: genetic variants and outcomes of HIV-1 infection in African American adolescents. PLoS One. 2010;5(10):e13384. PMID: 20976276; PMCID: PMC2954785. Shrestha S, Aissani B, Song W, Wilson CM, Kaslow RA, Tang J. Host genetics and HIV-1 viral 78. 79. 80. 81. 82. 83. 84. 85. 86. 87. 88. 89. 90. 91. 92. load set-point in African-Americans. AIDS. 2009;23(6):673-7. PMID: 19276793; PMCID: PMC2663898. Singh A, Guidry L, Narasimhulu KV, Mai D, Trombley J, Redding KE, Giles GI, Lancaster JR, Jr., Steyn AJ. Mycobacterium tuberculosis WhiB3 responds to O2 and nitric oxide via its [4Fe4S] cluster and is essential for nutrient starvation survival. Proc Natl Acad Sci U S A. 2007;104(28):11562-7. PMID: 17609386; PMCID: PMC1906726. Singh A, Mai D, Kumar A, Steyn AJ. Dissecting virulence pathways of Mycobacterium tuberculosis through protein-protein association. Proc Natl Acad Sci U S A. 2006;103(30):11346-51. PMID: 16844784; PMCID: PMC1544089. Siroy A, Mailaender C, Harder D, Koerber S, Wolschendorf F, Danilchanka O, Wang Y, Heinz C, Niederweis M. Rv1698 of Mycobacterium tuberculosis represents a new class of channelforming outer membrane proteins. J Biol Chem. 2008;283(26):17827-37. PMID: 18434314; PMCID: PMC2440620. Song H, Huff J, Janik K, Walter K, Keller C, Ehlers S, Bossmann SH, Niederweis M. 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