Fermentation and Other Uses of Microorganisms Fermentations occur when microorganisms consume susceptible organic substrate as part of their own metabolic processes. Such interactions are fundamental to the decomposition of natural materials, and to the ultimate return of chemical elements to the soil and air without which life could not be sustained. Natural fermentations have played a vital role in human development and are probably the oldest form of food preservation. Although the growth of microorganisms, in many foods is undesirable and considered spoilage, some fermentations are highly desirable. Fruit and fruit juices left to the elements acquired an alcoholic flavor; milk on standing became mildly acidic and eventually became cheese; cabbage turned to sauerkraut. These changes tasted good and so early civilizations encouraged the conditions that permitted them to occur. Sometimes the desired results were obtained repeat repeatedly, but this was not always so. It soon was also discovered that certain alcoholic fruitjuices and sour milks would keep well, and so part of the food supply was converted into these forms as a means of preservation. Today, other methods of food preservation are superior to fermentation as means of preserving many foods. In technically advanced societies the major importance of fermented foods has come to be the variety they add to diets. In many less developed areas of the world, however, fermentation and natural drying are still the major food preservation methods, and, as such, are vital to survival of much of the world's population. The various preservation methods discussed thus far, based on the applications of heat, cold, removal of water, application of radiation, and other principles, all have the common objective of decreasing the numbers of living organisms in foods, or at least holding them in check against further multiplication. In contrast, fermentation, whether for preservation purposes or not, encourages the multiplication of microorganisms and their metabolic activities in foods. But only selected organisms are encouraged, and their metabolic activities and end products are highly desirable. A partial list of fermented foods from various parts of the world is given in Table 12.1. The increasing application of biotechnology and genetic engineering techniques to food production is bringing added importance to food fermentations. Table 12.1. Some Industrial Fermentations in Food Industries Lactic acid bacteria Vegetables and fruits cucumbers - dill pickles, sour pickles, salt stock olives - green olives, ripe olives cabbage --- >sauerkraut turnips ---> sauerriiben lettuce ---> lettuce kraut mixed vegetables, turnips, radish, cabbage ~-> Paw Tsay mixed vegetables in Chinese cabbage ---> Kinichi vegetables and milk - Tarhana vegetables and rice - Sajur asin dough and milk - Kislik coffee cherries ---> coffee beans vanilla beans --> vanilla taro ---> poi Meats --> sausages such as salami, Thuringer, summer, pork roll, Lebanon bologna, cervelat Dairy products sour cream sour milk drinks-acidophilus, yoghurt, cultured buttermilk, Bulgarian, skyr, gioddu, leban, dadhi, taette, mazun butter-sour cream butter, cultured butter, ghee cheese-unripened --- > cottage, pot, schmierkase, cream whey ---> mysost, primost, ricotta, schottengsied ripened --> Cheddar, American, Edam, Gouda, Cheshire, provolone Lactic acid bacteria with other microorganisms Dairy products with propionic acid bacteria-Emmenthaler, Swiss, Samso, Gruy~re cheeses with surface-ripening bacteria-Limburger, brick, Trappist, Munster, Port de Salut with yeasts -kefir, kumiss or kumys with molds-Roquefort, Camembert, Brie, hand, Gorgonzola, Stilton, Blue Vegetable products with yeasts-Nukamiso pickles with mold-tempeh, soya sauce Acetic acid bacteria-wine, cider, malt, honey, or any alcoholic and sugary or starchy products may be converted to vinegar Yeasts malt --- > beer, ale, porter, stout, bock, Pilsner fruit --> wine, vermouth wines ~--> brandy molasses ---> rum grain mash - whiskey rice ---> sak6, sonti agave ---> pulque bread doughs --- > bread Yeasts with lactic acid bacteria cereal products --- > sour dough bread, sour dough pancakes, rye bread ginger plant ----> ginger beer beans --> vermicelli Yeasts with acetic acid bacteria cacao beans citron Mold and other organisms soybeans-miso, chiang, su fu, tamari sauce, soy sauce fish and rice-lao, chao Courtesy of C. S. Pederson. Definitions The term fermentation has come to have somewhat different meanings as its underlying causes have become better understood. The derivation of the word fermentation signifies a gentle bubbling condition. The term was first applied to the production of wine more than a thousand years ago. The bubbling action was due to the conversion of sugar to carbon dioxide gas. When the reaction was defined following the studies of Gay-Lussac, fermentation came to mean the breakdown of sugar into alcohol and, carbon dioxide. Pasteur later demonstrated the relationship of yeast to this reaction, and the word fermentation became associated with microorganisms, and still later with enzymes. The early research on fermentation dealt mostly with carbohydrates and reactions that liberated carbon dioxide. It was soon recognized, however, that microorganisms or enzymes acting on sugars did not always evolve gas. Further, many of the microorganisms and enzymes studied also had the ability to break down noncarbohydrate materials such as proteins and fats, which yielded carbon dioxide other gases, and a wide range of additional materials. Currently, the term fermentation is used in various ways which require clarification. When chemical change is discussed at the molecular level, in the context of comparative physiology and biochemistry, the term fermentation is correctly employed to 2~ describe the breakdown of carbohydrate materials under anaerobic conditions. In a somewhat broader and less precise usage, where primary interest is in describing the end products rather than the mechanisms of biochemical reactions, the term fermentation refers to breakdown of carbohydrate and carbohydratelike materials under either anaerobic or aerobic conditions. Conversion of lactose to lactic acid by Streptococcus lactis bacteria is favored by anaerobic conditions and is true fermentation; conversion of ethyl alcohol to acetic acid by Acetobacter aceti bacteria is favored by aerobic conditions and is more correctly termed an oxidation rather than a fermentation. Common usage frequently overlooks this distinction and considers both types of reactions to be fermentation& In this and subsequent chapters the common usage of the term fermentation, referring to both the anaerobic and aerobic breakdown of carbohydrates, will be followed. But the word fermentation also is used in a still broader and less precise manner. The term fermented foods is used to describe a special class of food products characterized by various kinds of carbohydrate breakdown; but seldom is carbohydrate the only constituent acted upon. Most fermented foods contain a complex mixture of carbohydrates, proteins, fats, and so on, undergoing modification simultaneously, or in some sequence, under the action of a variety of microorganisms and enzymes. This creates the need for additional terms to distinguish between major types of change. Those reactions involving carbohydrates and carbohydratelike materials (true fermentations) are referred to as "fermentative." Changes in proteinaceous materials are designated proteolytic or putrefactive. Breakdowns of fatty substances are described as lipolytic. When complex foods are "fermented" under natural conditions, they invariably undergo different degrees of each of these types of change. Whether fermentative, proteolytic, or lipolytic end products dominate will depend on the nature of the food, the types of microorganisms present and environmental conditions affecting their growth and metabolic patterns. In specific food fermentations, control of the types of microorganisms and environmental conditions to produce desired product characteristics is necessary. Benefits of Fermentation In addition to the roles of fermentation in preservation and providing variety to the diet, there are further important consequences of fermentation. Several of the end products of food fermentation, particularly acids and alcohols, are inhibitory to the common pathogenic microorganisms that may find their way into foods. The inability of Clostridium, botulinum to grow and produce toxin at pH values of 4.6 and below has already been cited. Increasing the acidity of foods by fermentation is very common. Foods as diverse as yogurt, hard sausages, and sauerkraut all contain acid as a result of fermentation. When microorganisms ferment food constituents, they derive energy in the process and increase in numbers. To the extent that food constituents are oxidized, their remaining energy potential for humans is decreased. Compounds that are completely oxidized by fermentation to such end products as carbon dioxide and water retain no further energy value. Most controlled food fermentations yield such major end products as alcohols, organic acids, aldehydes, and ketones, which are only slightly more oxidized than their parent substrates, and so still retain much of the energy potential of the starting materials. Fermentation processes are attended by temperature increases. The energy dissipated as heat represents a fraction of the total energy potential of the original food material no longer recoverable for nutritional purposes. Fermented foods can be more nutritious than their unfermented counterparts. This can come about in at least three different ways. Microorganisms not only are catabolic, breaking down more complex compounds, but they also are anabolic and synthesize several complex vitamins and other growth factors. Thus, the industrial production of such materials as riboflavin, vitamin B12 and the precursor of vitamin C is largely by special fermentation processes. The second important way in which fermented foods can be improved nutritionally has to do with the liberation of nutrients locked into plant structures and cells by indigestible materials. This is especially true in the case of certain grains and seeds. Milling processes do much to release nutrients from such items by physically rupturing cellulosic and hemicellulosic structures surrounding the endosperm, which is rich in digestible carbohydrates and proteins. Crude milling, however, practiced in many less developed regions, often is inadequate to release the full nutritional value of such plant products; even after cooking, some of the entrapped nutrients may remain unavailable to the digestive processes of humans. Fermentation, especially by certain molds, breaks down indigestible coatings and cell walls both chemically and physically. Molds are rich in cellulose-splitting enzymes; in addition, mold growth penetrates food structures by way of its mycelia. This alters texture and makes the structures more Permeable to the cooking water as well as to human digestive juices. Similar phenomena result from the enzymatic actions of yeasts and bacteria. A third mechanism by which fermentation can enhance nutritional value, especially of plant materials, involves enzymatic splitting of cellulose, hemicellulose, and related Polymers that are not digestible by humans into simpler sugars and sugar derivatives. This goes on naturally in the rumen of the cow through the enzymatic action of protozoa and bacteria. It also occurs in the process of preparing silage for animal feeding. Cellulosic materials in fermented foods similarly can be nutritionally improved for humans by the action of microbial enzymes. Of course, such changes are accompanied by gross changes in texture and appearance of the starting food materials, just as all fermented foods are markedly altered from their unfermented counterparts. Such changes are not looked upon as quality defects. Quite the contrary; particularly in areas of the world where most of human nutrients are derived from plant sources, food materials markedly altered by fermentation commonly are more frequent and relished items of diet than are the natural plant components. Microbial Changes in Foods The normal microbial flora associated with foods can produce a very wide range of breakdown products. Depending on the major food substrates attacked, these microorganisms are designated proteolytic, lipolytic, or fermentative. Because of their generally broad complement of enzymes, few types of microorganisms are exclusively proteolytic, lipolytic, or fermentative. Rather, most types exhibit varying degrees of each property, depending on environmental conditions and other factors. Nevertheless, many organisms are characteristically dominant in one or another of these three basic kinds of change produced in food. Proteolytic organisms, which break down proteins and other nitrogenous compounds,' give rise to putrid and rotten odors and flavors considered undesirable beyond certain rather low levels. Similarly, lipolytic organisms, which attack fats, phospholipids, and related materials give rise to rancid and fishy odors and flavors not desired in most foods beyond minor levels. On the other hand, fermentative organisms convert carbohydrates and carbohydrate derivatives largely to alcohols, acids, and carbon dioxide. These end products are not generally offensive to our tastes and add zest to many J foods. Moreover, when produced in sufficient concentrations, the alcohols and acids resulting from fermentation inhibit many proteolytic and lipolytic organisms that are capable of food spoilage if not controlled. Here in lies the principle of preservation by fermentation: encourage the growth and metabolism of alcohol and/or acid-forming, microorganisms and suppress or control the growth of proteolytic and lipolytic types. Once the fermentative organisms are heavily established, they limit growth of the other types, not only by virtue of their production of alcohol and acid but also because they compete for and consume certain constituents of the food that otherwise would be utilized by the proteolytic and lipolytic organisms. Fermentation technology is not as simple as the above indicates. It is complex, due to the large number of microorganism types and enzymes on the one hand and the diversity of food systems on the other. Processors rarely deal with systems in which one or two organism types work on one or two food constituents; nor do they generally want only alcohol or acid production to the total exclusion of protein and fat breakdown. The clean, tart taste of fresh cottage cheese is largely due to the conversion by fermentation of lactose into lactic acid. On the other hand, the more complex flavors of Cheddar and Limburger cheeses are due to different degrees of protein and fat breakdown in addition to lactic acid fermentation. To obtain these balanced flavors in certain foods, the fermentation processes must be controlled to balance the microorganism types that may grow in the foods. Some of the more common and significant types of microbial activity in foods are indicated below. The complex intermediate steps leading to the final results are omitted. Sugar fermented by yeasts, such as Saccharomyces cerevisiae and Saccharomyces ellipsoideus, yields ethyl alcohol and carbon dioxide in accordance with the following overall reaction: C6H12O6------------2C2H5OH+2CO2. yeast This is the basis of wine and beer production and the leavening of bread. Alcohol from yeast-fermented cider, in the presence of oxygen, will be further fermented by bacteria such as Acetobacter aceti to acetic acid as in the reaction C6H5OH+O2---------------------CH3 COOH+H2O. Acetobacter aceti This is the mechanism of vinegar production. Lactose (milk sugar), fermented by Streptococcus lactis bacteria, gives lactic acid, which curdles the milk to yield cottage cheese and curd from which other cheeses can be made. Acids produced from fermentation, in the presence of oxygen, can be further broken down by molds. When this happens, the preservative action of the acid against other microorganisms is lost. Proteins broken down by proteolytic bacteria such as Proteus vulgaris and other organisms yield a wide range of nitrogen-containing compounds that give putrid, fishy, or decayed odors to food. Lipids broken down by lipolytic bacteria such as Alcaligenes lipolyticus and other organisms yield fatty acids. These and their subsequent breakdown products contribute to rancid odors or the characteristic odors of some aged cheeses. Low-acid foods supporting growth of Clostridium, botulinum may contain toxins produced by this bacterium. This food-poisoning organism will not grow in fermented foods high in acid. The types of activities indicated can lead to many interesting and highly significant sequences of reactions. These sequences are either prevented or encouraged, as dis cussed in the next section, depending on the type of fermented food being produced. Controlling Fermentations in Various Foods Among the many factors that influence microorganism growth and metabolism, the most common for controlling food fermentations include level of acid, level of alcohol, use of starters, temperature, level of oxygen, and amount of salt. These factors also determine the types of organism that may grow in a fermented food on later storage. Acid The inhibitory effects of acid are exerted whether acid is added directly to the food, is a natural constituent of the food, or is produced in the food by fermentative microorganisms. If not a natural constituent of the food (as it is in oranges or lemons), then acid must be added or formed by fermentation quickly, before spoilage or other harmful microorganisms have a chance to increase substantially in numbers and produce their effects. Food containing acid may be in a state of preservation, but if oxygen is available and surface molds grow and further ferment the acid, its preservative power is lost. In this way, proteolytic and lipolytic activity may gradually develop on the surface of such food. This can occur during the ripening of Cheddar cheese and constitutes a defect. Acid level can be effectively decreased by neutralization also. Certain yeasts will tolerate moderately high-acid conditions and produce alkaline end products, such as ammonia, from the breakdown of protein. These neutralize previously formed acid and permit subsequent growth of proteolytic and lipolytic bacteria. This is desirable and is encouraged in the surface ripening of Limburger cheese. These types of changes also occur when raw milk is allowed to ferment naturally (Fig. 12. 1). Raw milk generally will be contaminated with a wide variety of microorganisms. After a short period during which freshly drawn raw milk fails to support microbial growth (period of germicidal action), Streptococcus lactis dominates the fermentation and produces lactic acid. Eventually, this organism is inhibited from further, growth by its own acidity. Bacteria of the genus Lactobacillus, also common to milk are still more acid tolerant than Streptococcus lactis. The lactobacilli now take over the fermentation and produce still more acid until the new level becomes inhibitory to their further growth. In the high-acid environment, these lactobacilli gradually die off and acid-tolerant yeasts and molds become established. The molds oxidize acid and the yeasts produce alkaline end products from proteolysis, both of which gradually decrease the acid level to the point where proteolytic and lipolytic spoilage bacteria find the medium satisfactory. The growth of these organisms, especially the increased proteolytic activity, decreases the milk's acidity to the point where it can become more alkaline than the original raw milk. During the period of Streptococcus and Lactobacillus growth, the milk clots and the curd becomes firm, with little evidence of gas accumulation or development of off-odors. Mold and yeast growth followed by proteolytic and lipolytic bacterial growth digest this curd, produce a gassy condition, and develop off-odors characteristic of putrefaction. In bread-making, the sugars of dough are fermented with yeast, producing alcohol, carbon dioxide, and minor fermentation products. In typical white bread, the fermentation is not intended for preservation purposes and provides little protection of this kind. Here we are interested 'in the leavening power of the carbon dioxide gas and the flavors from fermentation. However, there are many varieties of sour breads where the yeast fermentation is accompanied by lactic acid fermentations from organisms of the Lactobacillus group. In addition to imparting characteristic flavor, the acid inhibits growth of spore-forming bacteria of the genus Bacillus in the dough and later in the bread. Spores of this genus if present in the dough survive the temperatures of baking. They them may produce a gummy condition known as “ropy” bread when non-acid bread is stored under damp conditions. This rarely occurs in sour breads. Alcohol Like acid, alcohol is a product of some fermentations and can be a preservative, depending on its concentration. The alcohol content of wines depends, in part, on the original sugar content of the grapes, the type of yeast, fermentation temperature, and level of oxygen. Just as with organisms producing acid, yeasts cannot tolerate their own alcohol and other fermentation products beyond certain levels. For many yeasts this occurs in the range of 12-15% alcohol by volume. Natural wines generally will contain 9-13% alcohol from fermentation. This is not sufficient in itself for complete preservation, and so such wines must receive, in addition, a mild pasteurization treatment. Fortified wines are natural wines to which additional alcohol is added to bring the final alcohol concentration up to about 20% by volume. Such wines may not require further pasteurization. Use of Starters When a particular type of microorganism is present in large numbers and is multiplying, it usually dominates its environment and keeps down the growth of other types of microorganisms. In early times, a winemaker or cheesemaker used this principle, without quite knowing why, when part of a previous batch of wine was poured back into fresh grape juice, or cheese. milk into fresh milk for the next batch. Such practices continue today in many areas of the world. Fig. 12.2 illustrates one kind of primitive cheese-making currently practiced in Nepal in the Himalayas. Milk from the yak ox ferments under natural conditions until sufficient acid is produced to coagulate curd. The curd is squeezed through the fingers into noodlelike forms, which then are dried in the sun. The fermented milk from one day's operation is used as a starter to initiate fermentation of the next day's production. In technologically advanced countries, starters of pure cultures obtained from commercial laboratories are used to help ensure controlled fermentation during cheesemaking. These cultures, available in dehydrated and in concentrated frozen form, have been developed from selected strains of lactic acid organisms outstanding for their quick and dependable acid production under cheesemaking conditions. Such strains often are resistant to traces of antibiotics and pesticide residues, which may find their way into cheese milk from farm operations, and to bacterial viruses (phages), all of which could otherwise interfere with starter activity. Similarly, special cultures are available for the production of wine, beer, vinegar, pickles, sausage, bread, and other fermented foods. Frequently, the food is heated to inactivate detrimental types of contaminating organisms prior to starter addition. Temperature Various microorganisms may dominate a mixed fermentation depending on the fermentation temperature. The sauerkraut fermentation is particularly sensitive to temperature. The effects temperature can have in this fermentation on final acid concentration and time to reach various acidities are indicated in Table 12.2. In sauerkraut production, three major types of organisms convert the sugar of cabbage juice to acetic acid, lactic acid, and other compounds. These bacteria include Leuconostoc mesenteroides, Lactobacillus cucumeris, and Lactobacillus pentoaceticus., Leuconostoc mesenteroides produces acetic acid, some lactic acid, alcohol, and carbon dioxide. The alcohol and acids also combine to form esters, which contribute to final flavor. Lactobacillus cucumeris produces additional lactic acid when Leuconostoc mes-, enteroides leaves off. Lactobacillus pentoaceticus produces still more lactic acid after Lactobacillus cucumeris ceases to be active. The desirable sequence of these fermentations is indicated in Fig. 12.3. Leuconostoc mesenteroides requires cool temperatures of about 21ºC for optimum growth and fermentation in sauerkraut manufacture. lactobacilli tolerate higher temperatures. If temperatures much above 21ºC are employed in the initial stages of the fermentation, the lactobacilli easily outgrow L. mesenteroides and then their high levels of acid production further prevent growth and fermentation of L. mesenteroides. Under these conditions, acetic acid, alcohol, and other desirable products of the L. mesenteroides. fermentation are not formed. The sauerkraut fermentation, therefore, employs initial low temperatures, which then may be increased somewhat in the later stages of fermetation. This is but one example of manipulating temperature to favor the type 1 organism desired. Oxygen The aerobic nature of molds has been discussed. The acetobacter important in vinegar making also requires oxygen, but the yeast that produces alcohol from sugar does it better in the absence of oxygen. Clostridium botulinum is a strict anaerobe. Food processors provide or remove air or oxygen as required to encourage or inhibit particular microorganisms. An organism may have different requirements with respect to oxygen for growth than it has for fermentation activity. Bakers' yeast (Saccharomyces cerevisiae) and yeast (Saccharomyces ellipsoideus) are good examples of this. Both grow better produce greater cell masses under aerobic conditions, but they ferment sugars more rapidly under anaerobic conditions. Thus, in the commercial production of bakers' the yeast is grown under aerobic conditions by bubbling air through a yeastated olasses solution in large tanks. Fermentation is favored in the breadmaking operation (after sufficient yeast population is established) by the relatively anaerobic conditions of large dough masses. In traditional vinegar manufacture, the fermentations are separated principally on the basis of the relationships of the fermenting organisms to oxygen. In this two-step process, the first step-involving conversion of the sugar of apple juice to alcohol may be started under aerobic conditions to stimulate yeast growth and increased cell mass. But conditions are soon made anaerobic to favor the fermentation of the sugar to alcohol. The second step involving the conversion of alcohol to acetic acid is promoted by highly aerobic conditions, since this transformation is really an oxidative fermentation. This conversion of alcohol to acetic acid is commonly carried out in a vinegar generator. Vinegar generators differ in design but generally consist of large tanks or vats packed with wood shavings to provide a large aerobic surface area. The alcoholic cider, after heavy inoculation with vinegar bacteria, is trickled through the wood shavings while air is blown up through the shavings. The vinegar is removed from the generator when its acetic acid concentration reaches 4% (or somewhat higher), since this is the minimum legal level for acetic acid in vinegar. Operation of a vinegar generator demands close control. Aerobic conditions can encourage mold development, and, as has been pointed out, molds can further break down acid. In addition, excessive aeration can itself oxidize acetic acid further to carbon dioxide and water. Salt Microorganisms can be separated on the basis of salt tolerance. The lactic acidproducing organisms used in fermenting olives, pickles, sauerkraut, certain meat sausages, and similar products generally are tolerant to moderate salt concentrations of the order of 10-18%. Many proteolytic and other spoilage organisms that can infect pickle and sauerkraut vats are not tolerant to salt above about 2.5%, and especially are not tolerant to a combination of salt and acid. In these fermentations, added salt gives the lactic acid-producing organisms an advantage in getting under way even if proteolytic types are present on the cucumbers or cabbage. Once underway, the acid produced by the lactic acid organisms plus the salt strongly inhibits proteolytic and other spoilage types. The salt added to vegetable fermentations also draws water and sugar out of the vegetables. The sugar entering the salt brine provides readily available carbohydrate for continued fermentation in the brine, which complements fermentation within the vegetable tissue from inward diffusion of lactic acid microorganisms. In this way, salt makes the difference between desirable fermentations and outright spoilage. Water drawn from the vegetables also tends to dilute the brine; thus salt must be frequently added to maintain the brine's preservative salt level. In the production of sauerkraut, approximately 2.0-2.5% salt generally is added to the cabbage, the major preservative effect coming from the acidity formed. Olives are placed in salt brines of about 7-10%, and cucumbers commonly are fermented in brines maintained at about 15-18% salt. Quite the same principle applies in the making of cheese. It is common practice to salt cheese curd to control proteolytic organisms during the long ripening periods, which may be in excess of a year for certain types of cheese. In this case, various salttolerant lactobacilli continue to produce acid and further modify the cheese curd during the ripening period. Many types of sausage and other fermented meats owe their unique flavors to fermentations by strains of Leuconostoc, Lactobacillus, and Pediococcus bacteria. Generally, fermentations by these organisms in meat products produce a less acid condition than is common in fermented vegetables. Such products as fermented sauerkraut and pickles have acidities in the range of about pH 2.5-3.5. Fermented meat sausages commonly have acidities in the range of pH 4.0-5.5. This degree of acidity would be marginal as a preservative were it not augmented by the presence of salt and other curing chemicals in the sausages, plus the effects from smoking, cooking, and partial drying of certain of these products. The desire to reduce the salt content of some fermented products must be undertaken with caution, as this can encourage the growth of undesirable microorganisms including food-borne disease causing organisms. Reduction in salt content must often be accompanied by other methods of inhibiting undesirable organisms while still promoting desirable ones. MICROORGANISMS AS DIRECT FOODS Quite apart from the use of microorganisms to produce desirable changes in foods, microorganisms of various types are grown, harvested, and further processed to yield animal feed and human food. Strains have been selected for rapid growth on specific substrates, nutrient content including amount and quality of their protein, organoleptic properties, and other attributes. In some cases, the protein from microorganisms has been isolated and used in foods. The term single-cell protein (SCP) has been introduced to designate high-protein food from yeast and other microorganisms, although the practice of growing yeast for food goes back many years. The term single-cell protein can be misleading because it suggests a product that is all protein. Although food yeasts may contain at least one-third protein on a dry basis and it is possible to extract this protein and produce nearly pure protein isolates, this is not commonly done and the entire yeast cell is more often utilized as a food or feed supplement. Brewers' yeast (Saccharomyces cerevisiae or Saccharomyces uvarum), a by-product of beermaking, and bakers' yeast (S. cerevisiae), commonly grown on molasses and produced mainly for its leavening property, have long been used as sources of nutrients. These and other yeasts have different carbon and nitrogen assimilation patterns (Table 12.3) and, therefore, can be grown on a wide range of agricultural and industrial byproducts, such as hydrolyzed plant tissues, cheese whey, ethanol, petroleum hydrocarbons, and other materials appropriately supplemented with nitrogen and mineral salts. Yeast solids normally contain about 7-12% of nucleic acids, which can produce harmful effects when yeast is consumed in large amounts. Several methods involving extraction procedures and autolytic degradation by the yeast cell have been developed that can decrease nucleic acids to about 1% yet retain much of the protein. Such Procedures need not be employed where the quantities of yeast consumed would contribute less than about 2 g of yeast nucleic acid per day to the adult diet. GENETIC ENGINEERING Humans have been breeding food animals, plants, and microorganisms in order to improve characteristics such as yield, disease resistance, appearance, processing attributes, and fermentation characteristics for centuries. Traditional breeding is accomplished by mating a male and a female in hopes that the offspring will have the desired characteristics. In the case of plants and microorganisms this is sometimes accomplished by direct mutation of the genes. Genes contain all the inheritable traits of living organisms. Such breeding is, in reality, selecting and directing the genetic makeup of the animal, plant, or microorganism. The problems with conventional breeding and mutation as methods of selecting for desirable traits are that they are not always predictable nor successful and can be time-consuming. It is also not possible to cross the species barrier with conventional breeding; that is, desirable traits of oranges, such as ability to produce high amounts of ascorbic acid, cannot be transferred to apples. In recent years, techniques for more directly manipulating the genetic characteristics of organisms, commonly referred to as genetic engineering, have been developed, following major advances in molecular biology. Genetic engineering through the use of recombinant DNA techniques, cell hybridization, spheroplast or protoplast fusion, and other methods can now remove genes from cells of one organism and reinsert them into the cells of organisms and program them to do specific functions. Progress to date has been greatest with microorganisms, including yeasts, and plants, but progress has also been made with animals. All of these processes are similar in that they identify the specific genes responsible for desirable traits in one species or type of organism and then transfer these specific genes to a different organism. In this way, the recipient organism acquires these traits. For example, in humans, pancreatic cells produce the protein insulin which is required to control blood sugar. People whose pancreas does not make insulin have diabetes and must take insulin. The genes from human cells which tell the pancreas to make insulin have been transferred to bacteria. The bacteria containing the genes for insulin are thus able to make insulin in culture. This insulin is collected, purified, and used to treat diabetics. In the food industry, these new techniques are being used to improve yields of traditional fermentation products; convert underutilized raw materials into useful substrates; produce new and improved enzymes, flavoring agents, sweeteners, gums and other food ingredients; and improve performance of cultures under economical processing conditions. For example, virus-resistant strains of important fermentation `microorganisms’ have been developed, as well as organisms which produce enzymes used to make foods such as cheese. In the brewing industry, cell hybridization has been used to produce improved yeast strains. As outlined in Fig. 12.4, the process involves removing cell walls from two yeast strains possessing different desirable attributes, promoting interchange of genetic material through fusion of their spheroplasts, and providing a medium and conditions for cell wall regeneration. The new yeast, which is capable of division and replication, can ferment maltose, dextrin, and lactose and thus has a wider range of utilizable substrates than either starting strain. Further, the property of flocculation facilitates removal of the yeast from the fermentation wort, making for better clarification of fermented beverages and more efficient reuse of yeast. Other important characteristics of the hybridized yeast resulting from initial strain selection include alcohol tolerance, production of desirable flavor compounds, and genetic stability. Genetic engineering is also finding uses in agriculture. Genes from bacteria which can kill certain insects but are harmless to humans have been transferred to plants. The plants then produce the protein that is toxic to the insect, so that when the insect cats the plant, the insect dies. These proteins have no effect on humans because they are inactivated in the human stomach. This type of genetic engineering may lead to a large reduction in the use of synthetic pesticides.