Motivation During last few decades, Surface Plasmon Resonance (SPR) and its advancement with imagining (SPRi) has demonstrated a great benefits in microfluidic sensors. SPR-based sensors are suitable and dependable systems for monitoring biological and chemical reactions. Currently, such platforms show a rapid growth in use in medical diagnosis, biological studies, food safety etc. (1). However, besides of high sensitivity, performing measurements in real-time and multi purpose use, this method has still a high limitations of sensitivity and selectivity of components. Most of the commercial and home-made setups were verified with the use of simple compounds, often previously treated or enhanced. The aim of this project is to develop a optofluidic plasmonic system that will result in direct detection of viruses and/or bacterias (E-coli) from biological media (e.g. Urine) which will be provided by Sønderborg Hospital. First step of the project is to measure influences of most important components of the sample to the angular shift in SPR. Combination of all data about the composition of urine, will give the range of changes which are related to the normal state of the patient's health. Next step of the project will focus on different chemical reagents and physical properties of the surface to enhanced the sensitivity and selectivity of the surface. The idea is to bond to the surface only those bacteria or viruses which are crucial for the project and decrease the affect of other components to the signal. Figure 2. A schematic drawings of examples of surface functionalization for SPR systems. ”A. Sandwich immunoassay for large molecules, B, Protein conjugate immobilized indirect inhibition immunoassay with optional secondary antibody-gold nanoparticle labeling in a second step. C. Protein-labeled inhibition immunoassay, D. Direct small molecule immunoassay . ”(2) The SPRi technique is a basic premise for this project. This method is based on the utilization of surface plasmon resonance phenomenon and its dependence on intensity, angle of incidence, polarization and wavelength of the incident light. The operation principles are shown on Fig 1 with usage of Kretschmann configuration. The idea is to use the monochromatic light as the excitation source. Then the incident angle is adjusted to the resonance angle, which depends on the type of metal, dielectric and wavelength of the light. The drop of the intensity of the light in the reflected beam correspond to the SPR absorption maximum. Any changes in the refractive index of the dielectric above the metal surface result in different resonance angle, which can be easily seen as different position of the dark line (Fig 1.). Figure 1. Principles of the Surface Plasmon Resonance imagining technique applied to the Kretschmann configuration (2). The second important part of the project is to observe and work with the degradation of the metal surface in microfluidic systems. Since, the flow of the liquid as well as the harsh environment of the urine have a significant impact on the stability, durability and quality of the metal surface. This situation greatly reduces the possibility of using the system in medical diagnostics. This part of the project will be dedicated to finding material and method, which could be used on top of metal surface to protect it against degradation process and simultaneously with no significant influence on the phenomenon of surface plasmon resonance. The effect of all experiments should result in an optofluidic system with practical medical usage to detect e.g. E-coli in a urine sample. (1) Mariani S, Minunni M., Surface plasmon resonance applications in clinical analysis. Anal Bioanal Chem 2014, 406, 2303–2323 (2) Mitchell, J. Small Molecule Immunosensing Using Surface Plasmon Resonance. Sensors 2010, 10, 7323-7346.