JOB DESCRIPTION Post Title: Research Associate Division/Institute: Respiratory Science Division, National Heart & Lung Institute Section: Tuberculosis Research Centre, Department of Respiratory Infections Job Family and Level: Academic & Research, Level B Salary Range: £32,750 - £41,540 per annum Reporting To Professor Ajit Lalvani Key Working Relationships (Internal to Dept/Div): Members of Professor Ajit Lalvani’s Tuberculosis Research Centre; the Laboratory Manager and other scientific and technical staff within the Respiratory Infections section. Imperial College Bioinformatics service and Imperial College MRC Genomics Laboratory Key Working Relationships (External) Medical staff at NHS Trust sites involved in patient recruitment, statistical collaborators at the University of Birmingham, and other research staff Location: St Mary's Campus, Paddington Duration: Full-time 12 months in the first instance Research Programme The Respiratory Infection Section led by Professor Ajit Lalvani focuses research on host responses to viral respiratory infections and tuberculosis. For further information see: http://www1.imperial.ac.uk/medicine/about/divisions/nhli/respiration/respinfect/ Tuberculosis Research Centre This world-leading multidisciplinary research group, established and led by Professor Ajit Lalvani, comprises about 15 scientists, clinical research nurses, clinical research fellows and graduate students. The group’s research focus includes probing the fundamental immunological control points in the natural history and biology of TB infection, as well as translational research to develop and validate improved biomarkers of TB infection, disease and treatment response. For further information visit the following web page: http://www1.imperial.ac.uk/medicine/about/divisions/nhli/respiration/respinfect/tbimm unology/ The Purpose of the Post 1 You will work under the direction of Professor Ajit Lalvani in the Tuberculosis Research Centre to evaluate established and novel techniques to define and validate biomarkers of TB infection and disease. The technologies that will be used and further developed include genome-wide microarrays, RT-PCR, RNA-Seq and other measures of host response. These assays will be applied to biobanked and fresh samples from blood, lung washings and other disease sites. You will have a good understanding of bioinformatics and will conduct your own analyses of the data generated using appropriate bioinformatics techniques and software packages. Using these approaches you will seek to systematically evaluate these novel diagnostic biomarkers of TB. The position is funded by the NIHR and is focused on the newly launched high-profile translational research programme called “Validation of New Technologies for Diagnostic Evaluation of Tuberculosis (VANTDET)”. Research Duties To plan, manage and execute the overall experimental strategy of VANTDET To optimise experimental protocols, in particular for gene expression microarrays and qRT-PCR To plan, conduct experiments, ensure accurate documentation, record and report results. To perform bioinformatic analyses and interpret all gene expression data from VANTDET To perform statistical analyses, with support from the VANTDET statistical expert To collaborate with the VANTDET Health Economist To assist in processing and storage of samples sent to the Tuberculosis Research Centre in accordance with Human Tissue Authority guidelines. To ensure quality control for all samples processed and stored in the biobank To ensure that all results generated are stored in a secure database To plan and write high-quality original research papers to journals based on your research findings. To present research results in the Tuberculosis Research Centre lab meetings and other forums To demonstrate depth or breadth of knowledge in this area and be recognised as a technical expert. To attend and participate in scientific meetings on TB and immunology within Imperial College, including journal clubs To develop contacts and research collaborations within the College and the wider community To co-supervise PhD students and assist other scientists in their research To assist in carrying out core support tasks, including equipment maintenance, preparation of reagents, monitoring of stock levels in stores and in individual labs, and other general responsibilities necessary for day-to-day lab operation To monitor and maintain a safe working environment in accordance with Health & Safety procedures. To assist with building and maintaining strong relationships with suppliers and ensure cost-effective purchasing of reagents, consumables and equipment. To promote the reputation of the Group, the Department and the College To have a flexible approach to work, including working outside normal hours if required Other Responsibilities: 2 To undertake appropriate administrative tasks To attend relevant meetings To undertake any necessary training and/or development Any other duties commensurate with the grade of the post as directed by Professor Lalvani. To observe and comply with all College policies and regulations, including the key policies and procedures on Confidentiality, Conflict of Interest, Data Protection, Equal Opportunities, Financial Regulations, Health and Safety, Imperial Expectations (fo r new leaders, managers and supervisors), Information Technology, Private Engagements and Register of Interests, and Smoking. To undertake specific safety responsibilities relevant to individual roles, as set out on the College Website Health and Safety Structure and Responsibilities page (http://www3.imperial.ac.uk/safety/policies/organisationandarrangements). Job descriptions cannot be exhaustive and the post-holder may be required to undertake other duties, which are broadly in line with the above key responsibilities. Imperial College is committed to equality of opportunity and to eliminating discrimination. All employees are expected to adhere to the principles set out in its Equal Opportunities in Employment Policy, Promoting Race Equality Policy and all other relevant guidance/practice frameworks. 3 IMPERIAL COLLEGE LONDON PERSON SPECIFICATION Qualifications: Essential A PhD in molecular biology with experience in gene expression microarray, qRTPCR and some bioinformatics or a closely related discipline, or equivalent research, industrial or commercial experience Knowledge and Experience: Essential Hands-on experience in core microbiological techniques, including microarrays, qRT-PCR and bioinformatics Proven research skills including generation and analysis of data, using above methods A thorough understanding of T cell immunology and the innate and adaptive immune response Experience of handling blood and local disease site samples Experience of tissue culture, including lymphoproliferation assays Experience in working with human clinical samples Experience of evaluating and comparing new assays Sufficient knowledge and experience of bioinformatics and statistics to be able to independently analyse data generated using micro-arrays and RNAseq Experience in using computers (Word, Excel, Powerpoint, Access) Desirable Knowledge of TB pathology, immunology and diagnostics Proven ability to plan, write and publish first author scientific papers in good journals Biosafety Containment Category III lab experience including working with M. tuberculosis complex organisms Skills and Abilities: Proven ability to conceive, design, execute and interpret your own experiments Proven ability to analyse, systematically record and clearly present data in an organised fashion Excellent planning skills and organisation of own work and ability to work efficiently and independently in a largely unsupervised fashion Ability to work as part of a team, with an ability to learn and to collaborate with other members, in addition to teaching techniques to junior and senior colleagues Ability to conduct a detailed review of recent literature Ability to develop and apply new concepts Creative approach to problem-solving Excellent verbal communication skills and the ability to deal with a wide range of people 4 Excellent written communication skills and the ability to write clearly and succinctly for publication Ability to direct the work of a small research team and motivate others to produce a high standard of work Ability to prioritise own work in response to deadlines Other: Willingness to work as part of a team and to be open-minded and cooperative Discipline and regard for confidentiality and security at all times Willingness to undertake any necessary training for the role Willingness to travel both within the United Kingdom and abroad to conduct research and attend conferences Willingness to work out of normal working hours (including weekends) if the requirements of the project demand. 5