1 2 An Overview of Infectious Bronchitis Virus in Chickens 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 Abbreviated title: Infectious bronchitis virus in chickens 21 22 23 24 25 26 27 1 28 Summary 29 Infectious bronchitis virus (IBV) is one of the foremost causes of economic loss within the 30 poultry industry. IBV is a commonly occurring, economically significant pathogen of 31 commercial chicken. Economic consequences to the poultry industry comprise mortality, 32 growth retardation and high condemnation rates in meat-type birds. In addition, decreased egg 33 production, reduced internal and external egg quality, and reduced hatchability have been 34 documented in layers and breeders affecting the performance of both meat-type and egg- 35 laying birds. Apart from this some nephropathogenic strains cause kidney damage. Secondary 36 pathogens can complicate the disease resulting in increased morbidity and mortality. Being a 37 single stranded RNA virus, IBV has an enormous capacity to change both by spontaneous 38 mutation and by genetic recombination resulting into the emergence of new variants. Since 39 after the first isolation of virus in 1937, it is found in almost all over the world. In addition, 40 most countries are now known to have their own indigenous IBV variants. Despite the use of 41 currently available live and inactivated vaccines, one of the most important difficulties to 42 control IB is related to emergence of variant strains. 43 44 Key words: Infectious bronchitis virus, chicken 45 46 47 48 2 49 Introduction 50 Infectious bronchitis virus (IBV) is an acute and highly contagious viral disease causing 51 severe economic losses for those involved in the chicken industry (Cavanagh and Gelb, 52 2008). IBV was initially found to cause only respiratory disease but over time the virus has 53 been isolated from various non-respiratory tissues including kidneys and different parts of the 54 oviduct and alimentary tract (Alexander and Gough, 1977; Ambali and Jones, 1990; Benyeda 55 et al., 2009; El‐Houadfi et al., 1986; Ganapathy et al., 2012; Maiti et al., 1985; Wang et al., 56 1997; Yu et al., 2001). To date, the virus only tends to cause disease in chickens even though 57 IBV-like coronaviruses have been isolated from non-chicken birds including some migratory 58 birds (Cavanagh, 2007; de Wit et al., 2011a; Felippe et al., 2010). All age groups, male and 59 females are susceptible to IBV (Cook and Mockett, 1995). The occurrence and severity of the 60 disease is dependent on factors related to the virus, host and environment. In spite of constant 61 efforts to control the disease by use of live and inactivated vaccines, the virus continues to 62 cause high production losses, poor health and raises welfare concerns. In most countries, 63 irrespective of chicken types, all are vaccinated using live and inactivated IBV vaccines. 64 The outbreaks of infectious bronchitis are frequent due to the continual emergence of variants. 65 This review summarizes in general the disease, different virus strains, its replication and 66 transmission, the disease incidence and control measures for infectious bronchitis virus 67 infection. 68 3 69 The Disease 70 In IBV infected flocks the morbidity rate can reach 100% but the mortality rate depends on 71 the presence of secondary infection, flock age, immune status, management and 72 environmental factors. In young chickens the mortality rate is typically 25-30% but it can 73 approach 80% as it depends on the virulence of the strain. Even though all age group of 74 chicks are susceptible to IBV, baby chicks are more susceptible than older ones (Cavanagh 75 and Gelb, 2008). 76 The most notable symptoms are those which affect the respiratory tract hence named as 77 infectious bronchitis. The severities of the clinical signs are influenced by several factors 78 associated with the field virus (such as strain, virulence and dosage), the host (age, sex, type 79 and immune status), the environment (dust, ammonia and stress) and management and 80 biosecurity levels (Ganapathy, 2009). The other forms of the disease are mainly associated 81 with the reproductive, renal and gastro-intestinal systems. It has been reported that the virus 82 can cause infertility in male chickens (Jones, 2010a). The virus has been isolated from the 83 testicles and semen of infected males birds (Gallardo et al., 2011). 84 The typical signs of IBV in chickens of less than six weeks of age are depression, huddling 85 under the heat source, difficulty with breathing (often more noticed at night when the birds 86 are resting), gasping, coughing, tracheal râles, nasal discharge, lethargy, watery eyes and 87 mild swollen sinuses in severe conditions (Cavanagh and Gelb, 2008; Ganapathy, 2009). 88 Baby chicks may die due to IBV and in uncomplicated infections chicken more than five 4 89 weeks of age the disease may not be serious. In any age groups if IBV is mixed with other 90 pathogens more severe diseases can occur (Cavanagh, 2007). 91 Following infection via the respiratory route the virus spreads to other tissues including the 92 reproductive tract. Infection at an early age may cause permanent damage to the reproductive 93 tract leading to a decrease in quantity and quality of eggs (Benyeda et al., 2009; Ganapathy, 94 2009; Raj and Jones, 1997). Infection of laying birds, results in decreases in egg production 95 and the extent of the damage can vary depending of the time of the infection and chicken’s 96 health status (Cook and Mockett, 1995). Affected flocks are unlikely to return to the normal 97 level of production (Benyeda et al., 2009; Ganapathy, 2009). 98 The nephritic form of IBV mostly occurs in broiler chickens but it might also affect young 99 growing pullets and even layers. Litter can be very watery and may contain excessive urate. 100 After a few days of infection the droppings of infected birds become completely wet and birds 101 may die suddenly within the first ten days (Meulemans and van den Berg, 1998). Infection 102 with IBV was believed to cause deep pectoral myopathy as another atypical clinical finding in 103 chickens (Raj and Jones, 1996). IBV serotype 793B was isolated from a broiler breeder flock 104 which had a bilateral myopathy affecting both deep and superficial pectoral muscles. It is 105 characterised by paleness and swelling of the deep pectoral muscles with the presence of 106 occasional facial haemorrhages (Gough et al., 1992; Raj and Jones, 1996, 1997). 107 Droual and Woolcock (1994) reported that a commercial broiler flock in the Central Valley of 108 California experienced respiratory disease and signs of swollen head syndrome (SHS). IBV 5 109 M41 was isolated from the tissue samples as well as serum samples was positive for IBV but 110 negative for avian metapneumovirus (aMPV). This finding suggests that SHS can also be 111 associated with IBV other than aMPV (Droual and Woolcock, 1994). In an experimental 112 infection with IS/885/00 in commercial broilers, head swelling was found at 15 days post- 113 infection (dpi). Following necropsy, sterile incision of skin was made, and swabs were taken 114 from tissues underneath the skin, and this was positive for the IS/885/00 by RT-PCR and 115 virus isolation (Awad and Ganapathy, unpublished). 116 Virus replication and spread 117 IBV has an incubation period of 24 to 48 hours and viral spread occurs rapidly among 118 chickens in a flock by aerosol and mechanical means. The initial replication of IBV occurs in 119 the upper respiratory, causing the loss of ciliated epithelial cells of sinuses and trachea. In 120 addition, some IBV strains also replicate in tissues along the alimentary tract (esophagus, 121 proventriculus, duodenum, jejunum, bursa of Fabricius, caecal tonsils, rectum, and cloaca) 122 without significant pathological effects (Boltz et al., 2004; Raj and Jones, 1997; Villarreal et 123 al., 2010). 124 Renal damage associated with different IBV strains is an increasingly important feature of 125 IBV infection especially in broilers as nephropathogenic strains produce less respiratory signs 126 (Ziegler et al., 2002) and lesions (Glahn et al., 1989), but can induce high mortality (de Wit et 127 al., 2011b). Nephropathogenic IBV outbreaks can be complicated and/or exacerbated by 128 management problems such as high dietary calcium (Glahn et al., 1989). Infection of enteric 6 129 tissues does usually not manifest itself clinically but persists for long periods and results in 130 fecal virus excretion. It has also been reported that the virus replicated in the gut for longer 131 than in the respiratory tract (Jones, 2010b). In recent years some strains of IBV have caused 132 proventriculitis (Benyeda et al., 2010; de Wit et al., 2011a; Gough et al., 2008; Sun et al., 133 2011; Yu et al., 2001) and enteritis (Jones, 2010a). Field infection with 793B is associated 134 with enteritis (Jones, 2010a). Apart from this, IBV replicates in the oviduct and testes of 135 infected chickens leading to decreases in egg production and fertility (Boltz et al., 2004; 136 Grgic et al., 2008; Villarreal et al., 2007). In breeder and laying hens the arrival of IBV QX 137 has reinforced the ability of some IBV strains in causing substantial pathological damage to 138 female chicken’s reproductive tracts. This in turn causes delayed onset of production, poor 139 peak in egg production, high percentage of false-layers and poor quality of eggs (de Wit et al., 140 2011b; Ganapathy, 2009). 141 Infectious bronchitis virus and strain variations 142 IBV is caused by a coronavirus, of the family Coronaviridae and over twenty five known 143 genotypes worldwide (Snyder, 2002). It is an envelope and single stranded RNA virus. Three 144 virus-specific proteins have been recognised: (i) the spike (S) glycoprotein; (ii) the membrane 145 or matrix (M) glycoprotein; and (iii) the nucleocapsid (N) protein (Lai and Cavanagh, 1997). 146 Being a single stranded RNA virus, IBV has an enormous capacity to change both by 147 spontaneous mutation and by genetic recombination (Cavanagh and Gelb, 2008) . When these 148 events occur with IBV both are most likely to result in the emergence of new variants if they 7 149 occur in the hypervariable regions of the spike gene. Most countries are now known to have 150 their own indigenous IBV variants which are characterised and are frequently named from the 151 laboratory or researcher in which or by whom they were first isolated for instance 152 Massachusetts, Connecticut, Arkansas, D274 and QX. It is very well understood that whilst 153 many new variants are unable to replicate or survive for long time, a few manage to emerge 154 and become of economic importance either worldwide or in restricted geographic areas. 155 Host range 156 It is accepted that chickens are the most significant natural hosts of avian infectious 157 bronchitis. However, farmed pheasants have also been found to be natural hosts for IBV 158 (Ignjatovic and Sapats, 2000). With history of clinical respiratory disease and reduce egg 159 production, this suggests that pheasants could be second natural hosts for IBV(Cook and 160 Mockett, 1995). However, it appears that some species of pheasant are not susceptible to the 161 virus or possibly some strains of IBV could infect pheasants (Ignjatovic and Sapats, 2000). 162 Recently, there is more evidence which suggests that IBV has a wider host range than was 163 previously thought and is not only limited to galliform (chicken-like) birds(Cavanagh, 2007; 164 Cavanagh and Gelb, 2008), but other species such as geese, ducks, and pigeons might also 165 play a role in the spread of IBV strains over the world (de Wit et al., 2011a; Felippe et al., 166 2010) . Interestingly the role of the wild birds in the world of IBV is largely unknown and 167 speculative but it is certainly a critical area that deserves more attention and research in near 168 future. 8 169 Incidence and geographical distribution 170 In 1931 Schalk and Hawn reported the first occurrence of IBV in the United State, as a "new 171 respiratory disease of baby chicks" (Schalk and Hawin, 1937). The first isolate of IBV was 172 the Beaudette strain (Beaudette and Hudson., 1937). Later, the M4 1 strain was isolated in the 173 North Dakota and found to be serologically related to Beaudette strain (Bracewell, 1975). 174 Strains of this serotype were among the first to be made into live vaccines, e.g. H 120 175 (derived from a Dutch isolate of 1955) (Bijlenga et al., 2004). 176 The Australian 'T' strain was the first IBV strain isolated in Australia in 1962 (Cumming, 177 1963; Ignjatovic et al., 1997). Many different IBV variants have been isolated and 178 characterized since then and IBV has always evolved independently here from the rest of the 179 world due to its geographical isolation (Ignjatovic et al., 2006). 180 In Europe, only 30% of the isolates were serologically related to the known North American 181 serotypes in the 1970s. The majority of the remainder strains were found to be related to four 182 Dutch strains; D207, D212, D3128 and D3896 (Davelaar et al., 1984), by VN test. Many of 183 the British IBV strains isolated between 1981 to 1983 were closely related to the Dutch 184 Strains; D207, 03128 and D3896 (Cook, 1984). Although these viruses caused respiratory 185 disease and aberrant drop in egg production in layer flocks, but, they were not associated with 186 poor egg quality (Cook, 1984; Cook and Huggins, 1986). Thereafter, many IBV variants were 187 isolated, from the UK (Gough et al., 1996), and in other European countries including France 188 (Picault et al., 1986) Belgium (Meulemans et al., 1987), Italy (Capua et al., 1994; Zanella et 9 189 al., 2000; Zanella et al., 2003) Poland (Minta et al., 1998) and Spain (Dolz et al., 2006, 190 2008). Among these of major importance internationally was the variant called variously 191 793B that emerged in the1990s and quickly spread to many parts of the world (Gough et al., 192 1992; Parsons et al., 1992). In Brazil, in addition to the local strains, viruses similar to the 193 European 793B type, Mass-type and Arkansas viruses have been reported (Villarreal et al., 194 2010). 195 In 2002 sequence of a new IBV genotype named Italy 02 with economical importance was 196 submitted to the GenBank nucleotide database. By using virus neutralization assays it was 197 demonstrated 198 reference IBV serotypes, and indicated that Italy 02 is likely to be a new serotype (Dolz et al., 199 2006). Later on, Italy 02 has been described to be the third most frequently detected IBV 200 strain and probably the dominant wild type in Western Europe. The origin of Italy 02 is 201 unknown, but it has been spreading predominantly throughout Europe (Worthington et al., 202 2008). 203 By the mid-1990s many published reports have revealed the diversity of IBVs causing disease 204 in different part of China. But, possibly the most significant IBV variant emerged from China 205 is the QX variant reported in association with proventriculitis (Wang et al., 1998). IBV QX 206 later appears to have spread to Russia and then to Europe (Bochkov et al., 2006; Worthington 207 et al., 2008). This genotype of IBV mainly affects the respiratory and reproductive systems 208 (Ducatez et al., 2009; Terregino et al., 2008). IBV QX isolated in Netherlands also causes that little antigenic relatedness exists between Italy 02 and some of the 10 209 renal disease and false layers (Irvine et al., 2010; Terregino et al., 2008). In the UK, IBV QX- 210 like was isolated from proventriculus of broilers with poor feed conversion ratio (FCR) and 211 body weight gain also showing respiratory signs (Ganapathy et al., 2012). 212 Another IBV genotype, the Q1, which was genetically and serologically distinct from IBV 213 classical strains, was reported in China from 1996 to 1998 (Yu et al., 2001). Recently, Q1 214 IBV strain has 215 (Jackwood, 2012), Middle East and Indian subcontinent (Ganapathy, unpublished) 216 Of late, IBV genotypes with certain regional importance such as IBV IS/855/00 (Meir et al., 217 2004), and IS/1494/06 were isolated in Israel (Meir, R. Personal communication). Later on 218 these strains were also reported in the Turkey (Kahya et al., 2013), Egypt (Abdel-Moneim et 219 al., 2012), Iraq (Mahmood et al., 2011) and Libya (Awad and Ganapathy, unpublished). 220 In nutshell, variants of most importance in major parts of the world, such as 793B or QX that 221 have spread over Asia, Europe and Africa in a short period have not been reported in the USA 222 or Australia. On the other hand, the major strain of the USA, the Arkansas strain has hardly 223 been reported outside the USA. A pathogenic strain like D1466 that has been in some 224 countries in Western Europe for three decades now has hardly been reported outside Western 225 Europe, although it is very difficult to achieve a sufficient level of protection (Cook et al., 226 1999), against this strain, which would make it easier for the strain to spread to other areas. It 227 seems likely that geographical isolation and control measures employed in countries may play 228 a part in preventing entry of IBV variants (de Wit et al., 2011a). also been identified in Europe (Toffan et al., 2011), South America 11 229 Prevention and Control 230 Since the discovery of the disease, past and present control strategies have struggled to 231 control the disease due to existence of numerous IBV strains more of which continue to 232 emerge. With such diversity it is becoming increasingly difficult to control the infection 233 using the currently available live and inactivated vaccines. Other than biosecurity and 234 management improvements these vaccines are in use worldwide. There is a continuous 235 emergence of variants through natural recombination. Even though most of these variants 236 disappear, few tend to stay and continue to cause disease resulting in production loss (de Wit 237 et al., 2011a). This appears to be due to an inability of currently available vaccines or 238 vaccination programmes in tendering full protection against emerging strains. In recent years, 239 IBV QX has become a huge threat to the poultry industry despite high and proper use of IBV 240 vaccine and vaccination in the Western Europe. It appears that current vaccines and 241 vaccination strategies have managed to reduce the impact of these newly emerged IBVs, in 242 terms of the occurrence of disease and production losses but has allowed the continuous 243 spread of the viruses. 244 The appropriate strategy for control of IBV is to use vaccine strains that are similar to those 245 found in a particular farm or area. In areas where this is not possible or where there were no 246 vaccines available for the prevalent strains, vaccination programmes consisting of different 247 strains tend to induce a higher and broader protection against challenges with several 248 heterologous strains (Cook et al., 2001; Cook et al., 1999; Terregino et al., 2008). Generally, 12 249 the success rate would depend on the genetic differences between the vaccine viruses and the 250 field viruses. Live vaccines are mostly administered by spray or drinking water (Cavanagh 251 and Gelb, 2008), but for better flock vaccine take it is preferable to vaccinate intraocularly or 252 intranasally. In long-term birds, for example breeders and layers, and in some countries in 253 broilers, IBV inactivated vaccines are used. This vaccine is given by intra-muscular or 254 subcutaneous injections for induction of high levels of humoral antibodies, as would protect 255 the birds against invading IBVs and avoids drops in egg production or quality. Such 256 vaccination in breeder birds helps in ensuring transfer of high and uniform levels of maternal 257 antibodies to hatching chicks. Maternal antibodies are important in conferring some 258 protection against of virulent IBVs (Davelaar and Kouwenhoven, 1977; Mondal and Naqi, 259 2001). 260 Conclusion 261 Avian infectious bronchitis still poses a great challenge for the chicken industry worldwide. 262 As a virus that goes through continuous changes, increasing number of regional and global 263 variants has been identified. But the foregoing survey of available knowledge does not ask for 264 new vaccines at every stage. 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