SUPPLEMENTAL TABLE A
Microsatellite marker loci
Locusa
Repeatb
Cyto.
Map
some
loc.
loc.
(AT)16
X
1B8
0
1
2
DROPCXGEN
(AAAC)5
X
2E2
0.9
1
1
DMSGG3
(CAG)11
X
3B1
1.3
1,2,3
1
(AC)15
X
4F1-F2
11
1,3
2
DELTEX
(AGTT)6
X
6A1-A2
17
2
1
AE003438
(GTCC)12
X
6C9-C10
18
1,3
3
DROSEV(2)
(TTG)9
X
10A2
33.4
1,3
1,2
DROYP3
(ACG)6
X
12B-C
44
3
1
DROEX02
(CATA)8
X
13F2
51.5
3
1,2
DMTROPONI
(CA)11
X
16F3-F6
57.6
1,2
1,2
AE003588
(TAT)12
2
21D3
1
3
3
AE003585
(GCA)14
2
22A3-A8
3
2
3
AC004441
(AT)20
2
22A3
3
1
2
DROYANETSB
(TG)19
2
22C
4
3
1
AE003615
(CAA)12
2
27B1-B2
22.5
3
3
AC005555
(TG)12
2
29A1-C1
31.5
1,2,3
2
DMU12269
(AAC)7
2
31A1-A3
39
2
2
AC006302
(AAT)11
2
34C4-D2
48.5
1
2
AF047180
DMU56661
-1-
Cross
Ref.c
Chromo-
(Table A continued)
DL(DRODORSAL)
(CAG)9
2
36C
52.9
1
1,2
CAD
(CAA)10
2
38E
54
2
1
ACOO4759
(CCT)11
2
38E6-E7
54.3
1
2
DROGPAD
(GT)19
2
47A
60
2
1
AC006472
(AG)16
2
45E1-46A2
61
1,2,3
2
DMMASTER
(CAG)8
2
50C
70.3
3
1
MAM
(CAG)8
2
50C
70.3
1
1
DMU19731
(TG)9
2
51A1-A2
71
1,2
2
AC004641
(AC)22
2
53D1-E2
81
1,2
2
ELF1
(CAG)6
2
54F
87
1
1
AC004307
(AT)14
2
56D11-E6
90
1,3
2
AC004365
(AT)17
2
58A4-B1
97.5
3
2
DS08011
(GT)8
2
59A1-B2
1,2
2
DMRHOb
(AC)6
3
62A
0.2
1
1
AC004343
(TC)12
3
62A1-A2
0.5
1,2
2
DMCPDR
(ACC)5
3
62B4-B5
1.5
1
1
AC004658
(AC)12
3
63D2-E1
8
1
2
DMU36477
(AT)14
3
64A
10
2
2
AE003482
(CTG)10
3
64B13
13
3
3
DMU14395
(CT)13
3
65D1-D3
18
1
2
DROLAMB2A
(ATT)5
3
67C
28
1
1
DMSGS378
(AC)8
3
70C2
41.4
1,3
1
-2-
101
(Table A continued)
DRO11DC7Z
(GAT)7
3
84
47
1
1
DRO17DC2Z
(AC)14
3
84
47
3
1
DMPROSPER
(GA)12
3
86E1
50
2
1
DMTRXIII
(CT)23
3
88B3
54.2
3
2
DROABDB
(CA)19
3
89E1-E2
59
3
1
DMCPO17G
(AGC)5
3
90D1-D2
62
2
1
DRONANOS
(TA)18
3
90E-F
67
1
1
AE003744
(TATC)15
3
95B1
80
1,3
3
DMTF125
(CAG)6
3
95C6-C8
81.5
2
2
DROROUGH
(GCT)11
3
97D5
91.1
3
2
AE003768
(GTT)10
3
98F6-F10
1,2
3
a
98
Locus names are either those used in published sources (e.g. SCHUG et al. 1998) or are
NCBI sequence numbers.
b
For microsatellites “discovered” by us (see text), the repeat number is the number of
perfect tandem repeats in the NCBI sequence listed in column 1.
c
Microsatellites were obtained from two on-line data bases or “discovered” by searching
targeted regions of the D. melanogaster genomic sequence, as explained in the text. (1)
refers to the data base maintained by C. Aquadro (SCHUG et al. 1998; AQUADRO 1998);
(2) refers to the data base maintained by D. GOLDSTEIN (2001); and (3) refers to those
loci that we obtained through targeted searches.
-3-
References:
AQUADRO, C. F., 1998 Microsatellites for Drosophila melanogaster
(http://www.mbg.cornell.edu/aquadro/aquadrolab.html).
GOLDSTEIN, D. B., 2001 The Drosophila microsatellite database
(http://www.ucl.ac.uk/biology/goldstein/ms_db).
SCHUG, M. D., K. A. WETTERSTRAND, M. S. GAUDETTE, R. H. LIM, C. M. HUTTER et al.,
1998 The distribution and frequency of microsatellite loci in Drosophila
melanogaster. Molec. Ecol. 7: 57-70.
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