Supplementary data Supplementary Table 1. The antibodies used and their sources Antibody anti-SGT1 Type rabbit polyclonal Source K. Kitagawa anti-SGT1(612104) mouse monoclonal anti-BUB1(MAB3610) mouse monoclonal anti-BUB1 sheep polyclonal anti-BUBR1 (MAB3612) mouse monoclonal anti-BUBR1 (612503) mouse monoclonal anti-MAD2 (sc-6329) goat polyclonal anti-HSP90 (sc-12119) mouse monoclonal anti-HSC70 (sc-7298) mouse monoclonal anti-SKP1 (sc-7163) rabbit polyclonal anti-CDC37 (sc-132129) mouse monoclonal anti–CENP-B rabbit polyclonal anti–CENP-C rabbit polyclonal anti–CENP-E mouse monoclonal anti-CENP-E (sc-11291) goat polyclonal anti–CENP-H (612142/612143) mouse monoclonal anti-CENP-H (A400-007A) rabbit polyclonal anti–CENP-I anti-HEC1 (NB-100-338) rabbit polyclonal mouse monoclonal BD Transduction Laboratories Chemicon International, Inc.; Temecula, CA a gift from S.S. Taylor, University of Manchester, Manchester, UK Chemicon International, Inc. BD Transduction Laboratories; San Jose, CA Santa Cruz Biotechnology, Inc.; Santa Cruz, CA Santa Cruz Biotechnology, Inc.; Santa Cruz, CA Santa Cruz Biotechnology, Inc. Santa Cruz Biotechnology, Inc. Santa Cruz Biotechnology, Inc. a gift from W.C. Earnshaw, University of Edinburgh, Institute of Cell and Molecular Biology, Edinburgh, UK a gift from W.C. Earnshaw a gift from T.J. Yen, Fox Chase Cancer Center, Philadelphia, PA Santa Cruz Biotechnology, Inc. BD Transduction Laboratories Bethyl Laboratories Inc.; Montgomery, TX a gift from T.J. Yen Novus Biologicals, Inc.; Littleton, CO 1 Reference Niikura and Kitagawa, 2003 Johnson et al., 2003; Taylor et al., 1998; Taylor et al., 2001 Tomkiel et al., 1994 Tomkiel et al., 1994 Schaar et al., 1997 Liu et al., 2003 anti-survivin (SURV-11S) mouse monoclonal anti-AIK (Aurora A) (3092) rabbit polyclonal anti–AIM-1 (Aurora B) (611082/611083) anti–-tubulin (63781) mouse monoclonal anti–glyceraldehyde-3-phosphate dehydrogenase (GAPDH) anti-centromere autoimmune (ACA) serum mouse monoclonal mouse monoclonal human polyclonal (from a patient with the autoimmune disease scleroderma CREST syndrome) Alpha Diagnostic International, Inc.; San Antonio, TX Cell Signaling Technology, Inc.; Beverly, MA BD Transduction Laboratories ICN Biomedicals, Inc.; Irvine, CA Chemicon International, Inc. a gift from W.R. Brinkley, Baylor College of Medicine, Houston, TX Earnshaw and Rothfield, 1985; Valdivia and Brinkley, 1985; Van Hooser et al., 2001 Supplementary Table 2. A summary of the effects of 17-AAG treatment (Figure 1e) and use of HSP90 siRNA (Figure 2d) on the localization of kinetochore proteins. Kinetochore protein Mitotic phase CENP-H Prophase/Prometaphase Metaphase Interphase Prophase/Prometaphase Metaphase Interphase Prophase/Prometaphase Metaphase Interphase Prophase/Prometaphase Metaphase Interphase Prophase/Prometaphase Metaphase Interphase CENP-I BUB1 CENP-C CENP-B Remaining kinetochore signals (%) + 17-AAG + HSP90 siRNA 11 18 17 24 34 46 27 67 34 44 66 41 65 79 80 60 N.D. N.D. 100 100 100 95 100 100 100 100 100 100 100 100 N.D., not determined. 2 Supplemental figure legends Figure S1 Delocalization of kinetochore proteins in response to 17-AAG treatment. Signal from the CREST antiserum (red) and DAPI staining (blue) are shown. After 17AAG treatment, (a) the BUBR1 signal (green) at kinetochores was diminished during prophase and metaphase; (b) the CENP-E signal (green) at kinetochores was decreased during prophase and metaphase; (c) localization of HEC1 (green) to kinetochores was affected substantially during metaphase and slightly during prophase; (d) localization of BUB1 (green) to kinetochores was affected moderately during metaphase and slightly during prophase; and (e) localization of CENP-B (green) was not substantially affected. (f) Western blot analysis of kinetochore proteins in untreated HeLa cells (−) and in HeLa cells treated with 17-AAG (500 nM) for 24 h (+) showed that the total amount of each kinetochore protein is not substantially changed by 17-AAG treatment. Figure S2 Delocalization of kinetochore proteins in response to HSP90 siRNA treatment. HeLa cells were transfected with siRNAs that targeted either luciferase (Luc) or HSP90alpha and HSP90beta. (a) BUB1 was delocalized in response to HSP90 depletion by specific siRNA in cells at prophase and metaphase. (b) CENP-B did not delocalize in response to HSP90 depletion. (c) Simultaneous HSP90 depletion and 17-AAG treatment in cells at prophase (blue bars), metaphase (red bars), or interphase (yellow bars) yielded results similar to those observed after either treatment alone. Figure S3 (a) The molecular masses (in Daltons) after deconvolution of the spectra are shown. 3 (b) The peptide sequences identified by the mass spectrometric analysis of SGT1 immunoprecipitates and the percentage of the total sequence covered by the identified sequences. (c) Immunoblot analyses of (left) SGT1 immunoprecipitates and (right) HSP90 immunoprecipitates. Proteins in the cell lysate (input, IN), supernatant (S), and precipitate (P) obtained by using antibodies to SGT1 or HSP90 or mouse IgG were detected with antibodies to BUBR1, BUB1, HEC1, CENP-B, CENP-I, CENP-E, and CENP-H. Total cell lysate volumes were equivalent to 5% or 10% of that of the starting material. Figure S4 Kinetochore ultrastructure. (A) Low-magnification electron micrograph of chromosomes in untreated HeLa cells in metaphase. Scale bar = 1 μm. (B) Highermagnification view of the inset shown in A. Scale bar = 200 nm. (C) Metaphase alignment in a HeLa cell treated with 17-AAG (as described in Figure 3b, lane C). Scale bar = 1 μm. (D) Higher-magnification view of the inset shown in C. Scale bar = 200 nm. Appendix 17-AAG induces a mitotic delay that depends on the spindle checkpoint. (a) Mitotic arrest caused by 17-AAG was reduced by MAD2 siRNA. 17-AAG (500 nM) was added 48 h after MAD2 siRNA transfection. Cells grown on coverslips were fixed, stained with DAPI, and subjected to fluorescence microscopy. Percentages of cells in prophase, prometaphase, and metaphase (Mitotic index) are shown. A total of 500 cells were analyzed in three independent experiments. (b) Western blot analysis of total HeLa cell lysates harvested 72 h after transfection with siRNA duplexes directed against 4 MAD2 showed depletion of MAD2 protein. Luciferase (Luc) siRNA was transfected into the cells as a control, and beta-tubulin protein served as a control for loading. 5