Journal of Biogeography SUPPORTING INFORMATI ON Older than the islands: origin and diversification of Galápagos leaf-toed geckos (Phyllodactylidae: Phyllodactylus) by multiple colonizations Omar Torres-Carvajal, Charles W. Barnes, María J. Pozo-Andrade, Washington Tapia and Gabriela Nicholls Appendix S3 Diversity and taxonomy of Galápagos leaf-toed geckos Six species were recognized in the first taxonomic revision of Galápagos leaf-toed geckos (Van Denburgh, 1912). Except for P. tuberculosus, a North American species that was thought to occur in the Galápagos until recognized as a separate species endemic to San Cristóbal (Taylor, 1942), Van Denburgh’s species-level taxonomy remains intact. All but two species – P. baurii and P. galapagensis – are restricted to a single island. Phyllodactylus baurii was described by Garman (1892) from Floreana, but populations from Española were regarded as the same species by Van Denburgh (1912), based on morphology. Populations on these two islands were later regarded as separate taxa by Lanza (1973), who recognized them as two subspecies. Our phylogenetic hypotheses (see Figs 2 & 3) strongly support the paraphyly of P. baurii, which is split into two clades corresponding to Floreana and Española. The ND4 genetic distance between them (0.14) is similar to distances between P. baurii from Floreana and other recognized species from Galápagos in the same clade (0.12–0.15), except for P. galapagensis, with distance values between 0.06–0.09 (see Appendix S1). We therefore designate the population in Española as a separate species, P. gorii, originally described by Lanza (1973) as a subspecies of P. baurii Garman, 1892. Van Denburgh (1912) and Lanza (1973) also recognized five subspecies within the widely distributed P. galapagensis which, as currently recognized, occurs on most of the central and western islands and islets, including Baltra, Bartolomé, Cowley, Daphne, Fernandina, Isabela, Islote Mares, Pinzón, Plaza Norte, Plaza Sur, Santa Cruz, Santiago, Seymour and Tortuga (Van Denburgh, 1912; Lanza, 1973). Based on the general lineage concept of species (de Queiroz, 1998), we recognize four species within P. galapagensis, corresponding to the following species and island groups: P. galapagensis (Santa Cruz and Caamaño islet off that island), P. galapagensis (Isabela), P. galapagensis (Pinzón) and P. galapagensis (Santiago). These species are readily identified based on genetic distances (see Appendix S1), reciprocal monophyly (see Fig. 2), geographical distribution (allopatry), and in some cases morphological differences (Van Denburgh, 1912; Lanza, 1973). Following the taxonomic arrangements of Van Denburgh (1912) and Lanza (1973), including the restriction of the type locality of P. galapagensis to Santa Cruz (Lanza, 1973), we recognize the populations in Santa Cruz and Caamaño islet off Santa Cruz as P. galapagensis Peters, 1869, and those populations in Pinzón as P. duncanensis Van Denburgh, 1912. No names are available for the populations in Isabela and Santiago, but Van Denburgh (1912) and Lanza (1973) described one subspecies each from islands near Santiago (Daphne and Islote Mares, respectively) that were not included in our analyses and could represent the same species as those sampled from Santiago for this study. Future studies including a larger geographical sampling of leaf-toed geckos from the Galápagos will help answer this and other questions, such as the origin of P. gilberti from Wolf Island. Active research on the Galápagos archipelago during the last 150 years has resulted in a large number of scientific papers and books (2656 Galápagos results in Scopus, 9 September 2013). The discoveries in the 21st century of the pink iguana endemic to Wolf volcano in northern Isabela (Gentile & Snell, 2009) and an unnamed species of giant tortoise from Santa Cruz (Russello et al., 2005; Chiari et al., 2009) are therefore remarkable. Additionally, three species of lava lizards (Microlophus barringtonensis, M. indefatigabilis and M. jacobi) have been resurrected from previous synonymy (Benavides et al., 2007; Benavides et al., 2009). Following this recent trend of species discoveries in the Galápagos, we identify four independent evolutionary lineages of leaf-toed geckos and propose that they be recognized as separate species (P. duncanensis, P. gorii, P. sp. 1 and P. sp. 2). 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