CURRICULUM VITAE Rafi Ahmed Personal Data Date of birth: November 19, 1948 Place of birth: Hyderabad, India Marital status: Married, two children Education Harvard University, Cambridge, MA, Ph.D./Microbiology, Molecular Genetics, 1981 Idaho State University, Pocatello, ID, M.S./Microbiology, 1974 Idaho State University, Pocatello, ID, B.S./Microbiology, 1972 Osmania University, Hyderabad, India, B.Sc./Chemistry, 1968 Professional Record Charles Howard Candler Professor of Microbiology and Immunology, Emory University, 2010-present Georgia Research Alliance Eminent Scholar in Vaccine Research and Professor of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia, 1995-present Associate Director, Emory/Atlanta Center for AIDS Research, Emory University, 2000-present Professor, Department of Microbiology & Immunology, UCLA School of Medicine, Los Angeles, California, 1992-1995 Associate Professor, Department of Microbiology & Immunology, UCLA School of Medicine, Los Angeles, California, 1988-1992 Assistant Professor, Department of Microbiology & Immunology, UCLA School of Medicine, Los Angeles, California, 1984-1988 Assistant Member, Department of Immunology, Scripps Clinic and Research Foundation, La Jolla, California, 1984 Research Fellow, Department of Immunology, Scripps Clinic and Research Foundation, La Jolla, California, 1981-1984 Honors Member, Institute of Medicine, National Academy of Sciences, 2014 Foreign Member, Indian National Academy of Sciences, 2013 Drexel Prize in Immunology, Drexel University, Philadelphia, PA, 2013 Dan H. Campbell Memorial Lecturer, Asilomar, CA, 2012 Janeway Lecture, Yale University, New Haven, CT, 2012 Stuart Memorial Lecture, Brown University, Providence RI, 2012 Cepero Memorial Lecture, University of Miami, Miami, FL, 2011 Julius Stone Lecture, Society for Investigative Dermatology, 2010 Baruj Benacerraf Lecture in Immunology, Harvard University, Boston, MA, 2010 Member of the National Academy of Sciences (USA), 2009 Calame Lecture, Columbia University, Columbia, NY, 2009 Keynote Lecture, Conference for Immunology Day, Montreal, Canada, 2009 Bassford Lecture, University of North Carolina, Chapel Hill, NC, 2009 Keynote Lecture, Prevention of HIV/AIDS, Keystone, CO, 2009 Dolman Lecture, University of British Columbia, Vancouver, BC, 2009 Keynote Lecture, Immunologic Memory and Host Defense, Keystone, CO, 2009 Keynote Lecture, Association of Scientists of Indian Origin in America (ASIOA), Denton, TX, 2009 Idaho State University Distinguished Alumnus Award, Pocatello, ID, 2009 Hepatitis B Foundation Bruce Witte Distinguished Lecturer, Philadelphia, PA, 2008 Thaler Honorary Lecture, Aeras Global TB Vaccine Foundation, Rockville, MD, 2008 45th Annual J.S. and H.R. Blumenthal Memorial Lectureship, Minneapolis, MN, 2007 1 Dean’s Distinguished Faculty Lecture and Award, Emory University School of Medicine, 2007 Thomas J. Matthews Endowed Lectureship, Duke University, Durham, NC, 2006 Keynote Lecture, Basic Aspects of Tumor Immunology, Keystone, Colorado, 2005 Russell S. and Rae Weiser Endowed Lecture in Immunology, Univ. of Washington, Seattle, WA, 2005 Fellow, American Academy of Microbiology, 2004 Albert E. Levy Scientific Research Award, Emory University, 2003 Neal Nathanson Lectureship, University of Pennsylvania, Philadelphia, PA, 2003 NIH Director's Lecture (Dyer Lecture), 2001 AAI Distinguished Lecture, Orlando, Fl., 2001 3rd Merle Sande Lecture, Gladstone Institute of Virology and Immunology, San Francisco, CA, 2001 The Tadeusz J. Wiktor Memorial Lecture, Wistar Institute, Philadelphia, PA, 1999 Fellow, American Association for the Advancement of Science, 1999 Visiting Lamb Professor, Vanderbilt University School of Medicine, 1995 Harry Weaver Neuroscience Scholar, National Multiple Sclerosis Society, 1986-1991 Ryan Foundation Scholar, Harvard University, Cambridge, Massachusetts, 1976-1980 Osmania University Merit Scholarship, 1966-1968 Government of India National Merit Scholarship, 1963 Scientific Advisory Boards Scientific Advisory Board, La Jolla Institute for Allergy & Immunology, La Jolla, CA, 2014-current Scientific Advisory Board, Immune Tolerance Network, Bethesda, MD, 2014-current Scientific Advisory Group, HVTR Laboratory (IAVI), New Delhi India, 2013-current Selecta Biosciences, Boston, MA, 2008-current Immune Design, Seattle WA, 2008-current Novartis Vaccines, Sienna, Italy, 2007-current NIH Vaccine Research Center, Board of Scientific Counselors, Bethesda, MD, 2007-current Merck, West Point, PA, 2006-current Singapore Immunology Network, Singapore, 2006-current Singapore-MIT Alliance for Research and Technology, Cambridge, MA, 2006-current Poxvirus T cell Vaccine Discovery Consortium, Bill & Melinda Gates Foundation, Seattle WA, 2006Dept. of Biotechnology, Ministry of Science, Government of India, New Delhi, India, 1998-current Global HIV Vaccine Enterprise, New York, NY, 2008-2012 Aeras Global TB Vaccine, Rockwell, MD, 2007-2010 Midwestern Regional Center of Excellence, Chicago, IL, 2006-2011 Crucell, Leiden, Netherlands, 2006-2010 Intercell AG., Vienna, Austria, 2005-2011 VaxInate Corp. New Haven, CT, 2004-2009 HVTN Scientific Advisory Committee, 2003 Pediatric Dengue Vaccine Initiative (Gates Foundation) Scientific Advisory Committee, 2003 National Cancer Institute, (NIH) Board of Scientific Counselors, 2001-2003 International AIDS Vaccine Research (IAVI) Advisory Committee, 2000 Scientific Advisory Board, Ministry of Science, Government of India, 1999 National Multiple Sclerosis Society Board, 1998 Advisory Board for the Oregon Regional Primate Research Center, 1998 Advisory Board Baylor School of Medicine, Center for AIDS Research (CFAR), 2000 AIDS Etiology and Pathogenesis Area Review Panel, OAR, NIH, 1995-1996 Biotechnology Science Advisory Committee, U.S. Environmental Protection, Agency, 1988-1992 Editorial Board Annual Reviews of Immunology, 2008-current Current Opinion in Immunology, 2007-current Immunological Reviews, 2005-current Current Topics in Microbiology & Immunology, 2005-current Editor-in-Chief, Microbial Pathogenesis, 1995-2009 Editor, Virology, 1996- 2006 Associate Editor, Immunity, 1997-1999 2 Editorial Board, Journal of Virology, 1989-1998 Editorial Board, Virology, 1990-1996 Editorial Board, Microbial Pathogenesis, 1989-1994 Professional Organizations American Association of Immunologists American Society for Investigative Pathology Infectious Diseases Society of America American Society for Microbiology American Society for Virology American Association for the Advancement of Science New York Academy of Sciences Sigma Xi Research Support (Direct costs/Yr.) 2 R01 AI030048-23 (Ahmed) 07/01/90-02/29/16 NIH/NIAID $477,547 T Cell Memory to Viruses The major goal of this project is to understand the mechanisms by which long-term T cell memory is generated and maintained. 5 U19 AI057266 (Ahmed) 9/01/03-4/30/19 NIH/NIAID $2,701,457 Vaccine Induced Immunity in the Young and Aged This is a Human Immunology Center grant to support studies characterizing immunological memory in humans after vaccination. 1 U19 AI090023 (Pulendran) 07/12/2010-06/30/15 NIH/NIAID $466,034 System Biological Analyses of Innate and Adaptive Responses to Vaccination HHSN266200700006C (Orenstein) 03/3007-03/29/21 NIH/NIAID $551,863 NIAID Center of Excellence for Influenza Research and Surveillance 5 P01 AI056299 (Sharpe) 09/30/03-08/31/19 Harvard University (NIH/NIAID) $155,583 T Cell Costimulatory Pathways: Functions and Interactions 1 R01 AI081846 (Sharpe) 03/03/10-02/28/15 Harvard University (NIH/NIAID) $42,000 Regulation of Chronic Viral Infection by Co-Inhibitory Pathways 1 R01 AI091493 (Haining) 09/30/10-08/31/15 Dana-Farber Cancer Institute (NIH/NIAID) $125,000 Functional Genomic Analysis of the CD8 T cell Response to HIV Vaccines European Commission Delegation (Ahmed) 10/01/11-09/30/14 Advanced Immunization technologies (ADITEC) $272,982 3 System biology of innate and adaptive immunity to adjuvanted influenza vaccination. 1PO1 A1096187-01 (Hunter) 07/07/11-06/30/16 NIH/NIAID $309,225 B-cell Biology of Mucosal Immune Protection from SIV challenge. The Ahmed sub-project will look at the role of follicular T helper cells in enhancing humoral immunity and protection. CHAVI-ID UMI-AI100663 (Burton) 07/01/12-06/30/19 NIH $50,000 Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery. 1 P01 AI097092-01A1 (Palese) NIH Towards a Universal Influenza Virus Vaccine. 07/01/12-06/30/17 $250,000 Invited Speaker (2013-14) 1. International Immunological Memory and Vaccine Forum (IIMVF), Tokyo, Japan, January 2013 2. Japan Science and Technology (JST) CREST Symposium, Japan, February 2013 3. Merieux Foundation, Annecy, France, March 2013 4. 14th Advanced Vaccinology Course (ADVAC) , Geneva, Switzerland, May 2013 5. 78th Cold Spring Harbor Laboratory’s Symposium, Cold Spring Harbor, NY, May 2013 6. Charles A. Janeway, Jr. Memorial Symposium, New Haven, CT, June 2013 7. Memorial Sloan-Kettering Cancer Center (MSKC) Seminar, New York, NY, June 2013 8. Dengue Vaccine Development Workshop, Bethesda, MD, June 2013 9. 15th International Congress of Immunology (ICI), Milan, Italy, August 2013 10. Duke CHAVI-ID Annual Retreat, Durham, NC, October 2013 11. Keystone Symposium on Molecular and Cellular Biology, Rio de Janeiro, Brazil, October 2013 12. Kidney Week 2013, Georgia World Congress Center, Atlanta, GA, November 2013 13. 2nd Annual San Antonio Vaccine Symposium, University of Texas, San Antonio, TX, November 2013 14. Cold Spring Harbor Laboratory Conference, Cold Spring Harbor, NY, November 2013 15. University of California Los Angeles (UCLA), Los Angeles, CA, December 2013 16. India Summit Meeting, Atlanta, GA, February 2014 17. First Workshop Human Vaccine Project, La Jolla, CA, February 2014 18. GT-Emory ImmunoEngineering Symposium, Atlanta, GA, February 2014 19. Genentech Visit, San Francisco, CA, March 2014 20. Scientific Advisory Board (SAB) Immunomodulatory Targets Program, San Diego, CA, April 2014 21. Jinnah Sindh Medical University Annual Retreat, Atlanta, GA, April 2014 22. Baylor College of Medicine, Houston, TX, April 2014 23. 2nd World Health Organization (WHO) Integrated Meeting, Geneva, Switzerland, May 2014 24. Advanced Course of Vaccinology (ADVAC), Geneva, Switzerland, May 2014 25. Universal Flu External SAB Meeting, New York, NY, May 2014 26. Immunochemistry and Immunobiology Gordon Conference, Newry, Maine, June 2014 27. 3rd Annual Southeastern Immunology Symposium, Emory University, Atlanta, GA, June 2014 28. BARDA Influenza Vaccine Improvement Workshop, Washington, DC, June 2014 29. Federation of Clinical Immunology Societies (FOCIS), Chicago, IL, June 2014 30. Novartis Scientific Exchange Meeting, Siena, Italy, July 2014 31. Interview for Principles of Virology Text, Philadelphia, PA, August 2014 32. Assessment Institute Pasteur of Shanghai, Chinese Academy of Sciences, China, August 2014 33. University of Massachusetts (UMMS) Seminar Series, Worcester, MA, September 2014 34. 5th Annual USA India Business Summit (UIBS), Georgia Tech, September 2014 35. Distinguished Ludwig Lecture, Lausanne, Switzerland, September 2014 36. Tisdale Lecture, University of Vermont, Burlington, VT, October 2014 4 Publications: 1. Ahmed, R. and A.F. Graham. 1977. Persistent infection in L cells with it’s mutants of reovirus. J. Virol. 23: 250-262 2. Fields, B.N., H.L. Weiner, R.F. Ramig and R. Ahmed. 1978. Genetics of reovirus: Aspects related to virulence and viral persistence. In Persistent Viruses, J.G. Stevens, G.J. Todaro and C.F. Fox (eds.), Academic Press, New York, pp. 389-398. 3. Chakraborty, P.R., R. Ahmed, and B.N. Fields. 1979. Genetics of reovirus: The relationship of interference to complementation and re-assortment of its mutants at non-permissive temperature. Virology 94:119-127. 4. Ahmed, R., P.R. Chakraborty, and B.N. Fields. 1980. Genetic variation during lytic reovirus infection: High passage stocks of wild type retrovirus contain temperature-sensitive mutants. J. Virol. 34: 285-287. 5. Ahmed, R., P. R. Chakraborty, A.F. Graham, R.F. Ramig and B.N. Fields. 1980. Genetic variation during persistent reovirus infection: Presence of extragenically suppressed its lesions in wild type virus isolated from persistently infected cells. J. Virol. 34:383-389. 6. Fields, B.N., H.L. Weiner, D.T. Drayna, A.H. Sharpe, D. Hardy, D. Rubin, S. Burstin, R. Ahmed, J. Gentsch and H. Donis-Keller. 1980. The molecular basis of reovirus virulence. In ICN-UCLA Symposia on Animal Virus Genetics, B.N. Fields, R. Jaenish and C.F. Fox (eds.), Academic Press, New York, pp. 663-671. 7. Ahmed, R. and B.N. Fields. 1981. Reassortment of genome segments between reovirus defective interfering particles and infectious virus: Construction of temperature-sensitive and attenuated viruses by rescue of mutations from DI particles. Virology 111: 351-363. 8. Ahmed, R., W.M. Canning, R.S. Kauffman, A.S. Sharpe, J. Hallum, and B.N. Fields. 1981. Role of the host cell in persistent viral infection: Coevolution of L cells and retrovirus during persistent infection. Cell 25: 325-332. 9. Ahmed, R., and B.N. Fields. 1982. Role of the S4 gene in the establishment of persistent reovirus infection in L cells. Cell 28: 605-612. 10. Ramig, R.F., R. Ahmed, and B.N. Fields, 1983. A genetic map of reovirus: Assignment of the newly defined mutant groups H, I and J to genome segments. Virology 125:299-313. 11. Ahmed, R., R. S. Kauffman, and B.N. Fields. 1983. Genetic variation during persistent reovirus infection: Isolation of cold-sensitive and temperature sensitive mutants from persistently infected L cells. Virology 131: 71-78. 12. Kauffman, R.S., R. Ahmed, and B.N. Fields, 1983. Selection of a mutant S1 gene during reovirus persistent infection of L cells: Role in maintenance of the persistent state. Virology 131: 79-87. 13. Byrne, J.A., R. Ahmed, and M.B.A. Oldstone. 1984. Biology of cloned cytotoxic T lymphocytes specific for lymphocytic choriomeningitis virus. I. Generation and recognition of virus strains and H-2b mutants. J. Immunol. 133:433-439. 14. Ahmed, R., J. A. Byrne and M.B.A. Oldstone. 1984. Virus specificity of cytotoxic T lymphocytes generated during acute LCMV infection: Role of the H-2 region in determining cross-reactivity for different LCMV strains. J. Virol. 51:34-41. 15. Ahmed, R., A. Salmi, and M.B.A. Oldstone. 1984 Mechanism of persistent LCMV infection in mice: Role of LCMV variants in suppression of LCMV specific cytotoxic T cell response and maintenance of 5 the carrier state. In Negative Strand Viruses, R. Compans and D. Bishop (eds.), Academic Press, New York, pp. 333-339. 16. Ahmed, R., A. Salmi, L.D. Butler, J. Chiller, and M.B.A. Oldstone. 1984. Selection of genetic variants of lymphocytic choriomeningitis virus in spleens of persistently infected mice: Role in suppression of cytotoxic T lymphocyte response and viral persistence. J.Exp.Med. 60: 521-540. 17. Ahmed, R. and M.B.A. Oldstone. 1984. Mechanisms and biological implications of virus induced polyclonal B cell activation. In Concepts in Viral Pathogenesis, A.L. Notkins and M.B.A. Oldstone (eds.), Springer-Verlag, New York, pp. 231-238. 18. Oldstone, M.B.A., R. Ahmed, J. Byrne, M. Buchmeier, Y. Riviere, and P. Southern. 1985. Virus and immune responses: Lymphocytic choriomeningitis virus as a prototype model of viral pathogenesis. Brit. Med. Bull. 41:70-74. 19. Ahmed, R., P. Southern, P. Blount, J. Byrne, and M.B.A. Oldstone. 1985. Viral genes, cytotoxic T lymphocytes and immunity. In Modern Approaches to Vaccines: Molecular and chemical basis of resistance to viral, bacterial, and parasitic diseases, R. Lerner and R. Chanock (eds.), Cold Spring Harbor Laboratory, New York. 20. Oldstone, M.B.A., R. Ahmed, M.J. Buchmeier, P. Blount, and A. Tishon. 1985. Perturbation of differentiated functions during viral infection in vivo. I. Relationship of LCMV and host strains to growth hormone deficiency. Virology 142: 158-174. 21. Riviere, Y., R. Ahmed, P. Southern, and M.B.A. Oldstone. 1985. Perturbation of differentiated functions during viral infection in vivo. II. Viral reassortants map growth hormone defect to the S RNA of the LCMV genome. Virology 142: 175-182. 22. Riviere, Y., R. Ahmed, P.J. Southern, M.J. Buchmeier, F.J. Dutko, and M.B.A. Oldstone. 1985. The S RNA segment of lymphocytic choriomeningitis virus codes for the nucleoprotein and glycoproteins 1 and 2. J. Virol. 53: 966-968. 23. Riviere, Y., R. Ahmed, P.J. Southern, M.J. Buchmeier, and M.B.A. Oldstone. 1985. Genetic mapping of LCMV pathogenecity: Virulence in guinea pigs is associated with the L RNA segment. J. Virol. 55:704709. 24. Ahmed, R. and M.B.A. Oldstone. 1986. Role of virus variants and T cell immunity. In Genetically Altered Viruses and the Environment. Banbury Center. Cold Spring Harbor Laboratory, pp. 223-233. 25. Riviere, Y., P.J. Southern, R. Ahmed, and M.B.A.Oldstone. 1986. Biology of cloned cytotoxic T lymphocytes specific for LCMV. V. Recognition is restricted to the viral S RNA segment and the genes it encodes. J. Immunol.136:304-307. 26. Southern, P.J., M.J. Buchmeier, R. Ahmed, S.J. Francis, B. Parekh, T. Riviere, M.K. Singh, and M.B.A. Oldstone. 1986. Molecular pathogenesis of arenavirus infections. In Vaccines 86: New approaches to immunization, R. Lerner and R. Chanock (eds.), Cold Spring Harbor Laboratory, New York 239-245. 27. Ahmed, R., C.C. King, and M.B.A. Oldstone. 1987. Virus-lymphocyte interaction: T cells of the helper subset are infected with lymphocytic choriomeningitis virus during persistent infection in vivo. J. Virol. 61:1571-1576. 28. Ahmed, R., B.D. Jamieson, and D.D. Porter. 1987. Immune therapy of a persistent and disseminated viral infection. J. Virol. 61:3920-3929. 29. Jamieson, B.D., L.D. Butler, and R. Ahmed. 1987. Effective clearance of a persistent viral infection requires cooperation between virus specific Lyt2+ T cells and non-specific bone marrow derived cells. J. Virol. 61:3930-3937. 6 30. Jamieson, B.D. and R. Ahmed. 1988. T cell tolerance: Exposure to virus in utero does not cause a permanent deletion of specific T cells. Proc. Natl. Acad. Sci. (USA) 85:2265-2268. 31. Ahmed, R., L.D. Butler, and L. Bhatti. 1988. T4+ T helper cell function in vivo : Differential requirement for induction of anti-viral cytotoxic T cell and antibody responses. J. Virol. 62:2102-2106. 32. Ahmed, R. and M.B.A. Oldstone. 1988. Organ specific selection of viral variants during chronic infection. J. Exp. Med. 167:1719-1724. 33. Wu-Hsieh, B., D.H. Howard and R. Ahmed. 1988. Virus induced immunosuppression: A murine model of susceptibility to opportunistic infection. J. Inf. Dis. 158:232-235. 34. Ahmed, R. 1988. Curing of a congenitally acquired chronic viral infection: Acquisition of T cell competence by a previously “tolerant” host. In Immunobiology and Pathogenesis of Persistent Virus Infections (1st International Symposium, Atlanta, Georgia, 1987), C. Lopez (ed.), American Society of Microbiology, pp. 159-167. 35. Ahmed, R., R.D. Simon, M. Matloubian, S.R. Kolhekar, P.J. Southern and D.M. Freedman. 1988. Genetic analysis of in vivo selected viral variants causing chronic infection: Importance of mutation in L RNA segment of lymphocytic choriomeningitis virus. J. Virol. 62:3301-3308. 36. Ahmed, R., 1989. Immunological tolerance in viral infections. In Concepts in Viral Pathogenesis III, A.L. Notkins and M.B.A. Oldstone (eds.), Springer-Verlag, New York. Chapter 36, pp. 304-310. 37. Jamieson, B.D. and R. Ahmed. 1989. T cell memory: Long-term persistence of virus specific cytotoxic T cells. J. Exp. Med.169:1993-2005. 38. Muller, D., M.M. Hobbs, R. Murray, K. Pederson, R. Ahmed, and J.A. Frelinger. 1989. Altered recognition of LCMV antigen presented on mutant class I molecules. In Transgenic Mice and Mutants in MHC Research, Springer-Vrelag Publishers, New York. 39. Ahmed, R. and J.G. Stevens. 1989. Viral persistence. In Virology, 2nd Edition, B.N. Fields (ed.), Raven Press, New York, pp. 241-265. 40. Oldstone, M.B.A., R. Ahmed, and M. Salvato. 1990. Viruses as therapeutic agents. II. Viral reassortants map prevention of insulin-dependent diabetes mellitus to the small RNA of lymphocytic choriomeningitis virus. J. Exp. Med. 171:2091-2100. 41. King, C.C., R. deFries, S.R. Kolhekar, and R. Ahmed. 1990. In vivo selection of lymphocyte-tropic and macrophage-tropic variants of lymphocytic choriomeningitis virus during persistent infection. J. Virol. 64:5611-5616. 42. Matloubian, M., T. Somasundaram, S.R. Kolhekar, R. Selvakumar, and R. Ahmed. 1990. Genetic basis of viral persistence: Single amino acid change in the viral glycoprotein affects ability of lymphocytic choriomeningitis virus to persist in adult mice. J. Exp. Med.172:1043-1048. 43. Ahmed, R., C.S. Hahn, T. Somasundaram, L. Villarete, M. Matloubian, and J.H. Strauss. 1991. Molecular basis of organ specific selection of viral variants during chronic infection. J. Virol. 65: 4242-4247. 44. Jamieson, B.D., T. Somasundaram, and R. Ahmed. 1991. Abrogation of tolerance to a chronic viral infection. J. Immunol. 147:3521-3529. 45. Tishon,A., Salmi, A., Ahmed, R., and Oldstone, M.B.A. 1991. Role of viral strains and host genes in determining levels of immune complexes in a model system-implications for HIV infection. AIDS Research and Human Retroviruses 7:963-969. 46. Ahmed, R. 1991. T cell tolerance to viruses. Curr. Opinion Immunol. 3:476-479. 7 47. Ahmed, R. 1992. Immunological memory against viruses. Sem. Immunol. 4:105-109. 48. King, C.C., B.D. Jamieson, K. Reddy, N. Bali, R. Concepcion, and R. Ahmed. 1992. Viral infection of the thymus. J. Virol. 66:3155-3160. 49. Lin, Y-L, L. Borenstein, R. Selvakumar, R. Ahmed, and F.O. Wettstein. 1992. Effective vaccination against papilloma development by immunization with L1 or L2 structural proteins of cottontail rabbit papilloma virus. Virology 187:612-619. 50. Lin, Y-L, L.A. Borenstein, R. Selvakumar, R. Ahmed, and F.O. Wettstein. 1993 Progression from papilloma to carcinoma is accompanied by changes in the antibody response to papillomavirus proteins. J. Virol. 67:382-389. 51. Lin, Y-L, L.A. Borenstein, R. Ahmed, and F.O. Wettstein. 1993. Cottontail rabbit papillomavirus L1 protein-based vaccines: Protection is achieved only with a full-length, nondenatured product. J. Virol. 67:4154-4162. 52. Matloubian, M., S.R. Kolhekar, T. Somasundaram, and R. Ahmed. 1993. Molecular determinants of macrophage-tropism and viral persistence: Importance of single amino acid changes in the polymerase and glycoprotein of lymphocytic choriomeningitis virus. J. Virol. 67:7340-7349. 53. Kolhekar, S. and R. Ahmed. 1994. Role of viral variants in persistent infections: Studies using LCM virus as a model system - replication in peritoneal macrophages in vitro. In Virology in the Tropics (International Conference on Virology in the Tropics, 1991). N. Rishi, K.L. Ahuja, and B.P. Singh, (ed.), New Delhi. 54. Ahmed, R. 1994. Persistent viral infection. Encycl. Virol. Academic Press Ltd., Publishers, London. 55. Selvakumar, R., L.A. Borenstein, Y-L Lin, R. Ahmed, and F.O. Wettstein. 1994. T cell response to cottontail rabbit papillomavirus structural proteins in virus infected rabbits. J. Virol. 68:4043-4048. 56. Lau, L.L., B.D. Jamieson, T. Somasundaram, and R.Ahmed. 1994. Cytotoxic T cell memory without antigen. Nature 369:648-652 57. Ahmed, R. 1994. Virus persistence and immune memory. Sem. Virol. 5:319-324. 58. Villarete, L., T. Somasundaram, and R. Ahmed. 1994. Tissue mediated selection of viral variants: Correlation between glycoprotein mutation and growth in neuronal cells. J. Virol. 68:7490-7496. 59. Matloubian, M., R.J. Concepcion, and R. Ahmed. 1994. CD4+ T cells are required to sustain CD8+ cytotoxic T cell responses during chronic viral infection. J. Virol. 68:8056-8063. 60. Walsh, C.M., M. Matloubian, C.C. Liu, R. Ueda, C.G. Kurahara, J.L. Christensen, M.T.F. Huang, J.D.E. Young, R. Ahmed and W.R. Clark. 1994. Immune function in mice lacking the perforin gene. Proc. Natl. Acad. Sci.(USA) 91:10854-10858. 61. Selvakumar, R., L.A. Borenstein, Y-L Lin, R. Ahmed, and F.O. Wettstein. 1995. Immunization with nonstructural proteins E1 and E2 of cottontail rabbit papillomavirus stimulates regression of virus induced papillomas. J. Virol. 69:602-605. 62. Slifka, M.K., M. Matloubian, and R. Ahmed. 1995. Bone marrow is a major site of long-term antibody production after acute viral infection. J. Virol. 69:1895-1902. 63. Clark, W.R., C. Walsh, A. Glass, M.T.F. Huang, R. Ahmed and M. Matloubian. 1995. Cell-mediated cytotoxicity in perforin-less mice. Intl. Rev. Immun. 13:1-14. 8 64. Shen, H., M.K. Slifka, M. Matloubian, E.R. Jensen, R. Ahmed, and J.F. Miller. 1995. Recombinant Listeria monocytogenes as a live vaccine vehicle for the induction of protective anti-viral cell mediated immunity. Proc. Natl. Acad. Sci. USA, 92:3987-3991. 65. Villarete, L., R. deFries, S. Kolhekar, D. Howard, R. Ahmed, and B. Wu-Hsieh. 1995. Impaired responsiveness to gamma interferon of macrophages infected with lymphocytic choriomeningitis virus clone 13: susceptibility to histoplasmosis. Infect. & Immun. 63:1468-1472. 66. Pedroza Martins, L., L.L. Lau, M. Asano, and R. Ahmed. 1995. DNA vaccination against persistent viral infection. J. Virol. 69:2574-2582. 67. Selvakumar, R., R. Ahmed, and F.O. Wettstein. 1995. Tumor regression is associated with a specific immune response to the E2 protein of cottontail rabbit papillomavirus. Virology 208:298-302. 68. Wright, K.E., R. Ahmed, and M.J. Buchmeier. 1995. Persistent infection of mice with Pichinde virus associated with failure to thrive. Microbial Pathogenesis 19:73-82. 69. Sher, A. and R. Ahmed. 1995. Regulation of innate and adaptive responses to infection: new avenues and angles. Curr. Opinion Immunol. 7:471-473. 70. Asano, M.S. and R. Ahmed. 1995. Immune conflicts in lymphocytic choriomeningitis virus. Springer Semin. Immunopathol. 17: 247-259. 71. Clark, W.R., C.M. Walsh, A.A. Glass, F. Hayashi, M. Matloubian, and R. Ahmed. 1996. Molecular pathways of CTL-mediated cytotoxicity. Immunol. Rev.146:33-44. 72. Ahmed, R., L.A. Morrison, and D.M. Knipe. 1996. Persistence of viruses. In Virology, 3rd Edition, B.N. Fields, D.M. Knipe, and P. Howley (eds.). Raven Press, New York, pp. 219-249. 73. Sydora, B.C., B.D. Jamieson, R. Ahmed, and M. Kronenberg. 1996. Intestinal intraepithelial lymphocytes respond to systemic lymphocytic choriomeningitis virus infection. Cell. Immunol. 176:161-169. 74. Slifka, M.K., H. Shen, M. Matloubian, E.R. Jensen, J. F. Miller and R. Ahmed. 1996. Antiviral cytotoxic T cell memory by vaccination with recombinant listeria monocytogenes. J. Virol. 70:2902-291 75. Ahmed, R. and D. Gray. 1996. Immunological memory and protective immunity: understanding their relation. Science 272:54-60. 76. Asano, M.S. and R. Ahmed. 1996. CD8 T cell memory in B cell deficient mice. J. Exp. Med. 183:21652174. 77. Ahmed, R. 1996. Tickling memory T cells. Science 272:1904. 78. Lau, L.L. and R. Ahmed. 1996. Anti-viral CD8+ Cytotoxic T cell memory. In Immunology and Pathogenesis of Persistent Virus Infections, W.J. Mahy and R.W. Compans (eds.). Harwood Academic, pp 235-253. 79. Slifka, M.K. and R. Ahmed. 1996. Long-term humoral immunity against viruses: revisiting the issue of plasma cell half-life. Trends in Microbiol. 4:394-400. 80. Whitmire, J.K., M.K. Slifka, I. Grewall, R.A. Flavell and R. Ahmed. 1996. CD40 ligand-deficient mice generate a normal primary CTL response but a defective humoral response to viral infection. J. Virol. 70:8375-8381. 81. van der Most, R.G., A. Sette, C. Oseroff, J. Alexander, K. Murali-Krishna, L.L. Lau, S. Southwood, J. Sidney, R.W. Chesnut, M. Matloubian, and R. Ahmed. 1996. Analysis of cytotoxic T cell responses to dominant and subdominant epitopes during acute and chronic lymphocytic choriomeningitis virus infection. J. Immunol. 157:5543-5554. 9 82. Slifka, M.K. and R. Ahmed. 1996. Limiting dilution analysis of virus-specific memory B cells by an ELISPOT assay. J. Immunol. Meth. 199:37-46. 83. Doherty, P.C. and R. Ahmed. 1997. Immune response to viral infection. In Viral Pathogenesis, 1st Edition, N.Nathanson (ed.) Raven Press, New York, pp 143-161. 84. Ahmed, R., L.A. Morrison, and D.M. Knipe. 1997. Viral persistence. 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