Wayland Baptist University Division of Mathematics and Sciences BIOL 4408. Cell and Molecular Biology Catalog description: A study of cellular structure and function at the molecular level. Membranes, organelles, bioenergetics, nucleic acid structure and function, regulation of gene expression, the cell cycle, and the modern genetic engineering will be emphasized. Lecture three hours, laboratory three hours. Prerequisites: BIOL 1401 and CHEM 3404 or division approval. $25 fee. Prerequisites: BIOL 1401 and CHEM 3404, or division approval. Textbook: Essential Cell Biology 2nd ed. By Alberts et. al. Course requirements: 1. Students are expected to read the textbook assignments and compile a complete set of notes from the text and lecture. Students will also be required to access the virtual campus blackboard system. 2. Lectures are illustrated with slides, videos and models. Students are encouraged to ask questions and be active participants in the discussions of the material presented. 3. The laboratory experience will be directed toward problem solving and scientific inquiry using modern biotechnological approaches. Students are required to write up all of the experiments performed in the lab and maintain a journal/lab notebook which will be turned in at the end of the course. 4. At least 3 traditional in class exams will be given as well as a take home exam and a comprehensive final examination. 5. Group presentation/paper. You will be assigned to a lab group. Each lab group will do labs together and will be responsible for cooperative lab reports and 1 research paper/presentation. The research paper/presentation will count the same as 1 exam grade. 6. The lab grade (worth 25% of course grade) will be derived from an average of lab write-ups done sometimes individually and sometimes as a lab group. Each lab group will also have to present and discuss 2 research articles in class (which count the same as a lab write-up) Outcome Competencies: I. Students will become competent in the following areas: The overall layout of this course is weighted towards cell structure, nucleic acids, gene regulation and signal transudation. The laboratory will be in the form of a semester-long project that will integrate and translate elements of the lecture material around a central biological question. Most of the laboratory exercises will be hands on experiments which will utilize modern biotechnological approaches. Introduction to Cells Cells under the Microscope The Eukaryotic Cell (to include information from Chs. 11,14 and 16) Unity and Diversity of Cells Model systems used to study animals, plants, cell cycle and development Membrane Structure The Lipid Bilayer Membrane Proteins Intracellular Compartments and Transport Membrane-Bounded Organelles Protein Sorting Vesicular Transport Secretory Pathways Endocytic Pathways Cytoskeleton Intermediate Filaments Microtubules Microtubule Associated Proteins Molecular Motors Microtubules in Mitosis Actin Filaments Specialized Actin Structures Actin and Myosin in Muscle Chemical Components of Cells Chemical Bonds Molecules in Cells Sugars, Fatty Acids, Amino Acids and Nucleotides Energy, Catalysis, and Biosynthesis Catalysis and the Use of Energy by Cells Activated Carrier Molecules and Biosynthesis How Cells Obtain Energy from Food The Breakdown of Sugars and Fats Storing and Utilizing Food Energy Generation in Mitochondria and Chloroplasts Mitochondria and Oxidative Phosphorylation Electron Transport Chains and Proton Pumping Chloroplasts and Photosynthesis Protein Structure and Function The Shape and Structure of Proteins How Proteins Work DNA The Structure and Function of DNA DNA Replication I: Prokaryotes DNA Replication II: Eukaryotes DNA Replication III: Regulation of DNA synthesis DNA Repair From DNA to Protein From DNA to RNA RNA Synthesis I: A mechanistic view of RNA Synthesis RNA Synthesis II: Eukaryotic vs Prokaryotic From RNA to Protein Translation I: A mechanistic view of translation Translation II: Post translational modification Chromosomes and Gene Regulation The Structure of Eukaryotic Chromosomes DNA Packaging Heterochromatin and Euchromatin Genetic Variation Genetic Variation in Bacteria Sources of Genetic Change in Eukaryotic Genomes Sexual Reproduction and the Reassortment of Genes DNA Technology – this is covered mostly in labs How DNA Molecules are Analyzed Nucleic Acid Hybridization DNA Cloning DNA Engineering The Study of Gene Regulation Gene Regulation Gene Regulation I: Transcriptional Regulation Gene Regulation II: Transcription Factors Gene Regulation III: Post-transcriptional Regulation Gene Regulation IV: Gene Regulation During Differentiation Gene Regulation V: Chromatin Effects Cell Communication Signal Transduction I: General Principles of Cell Signaling Signal Transduction II: Receptors and Ligands Signal Transduction III: G-Protein-Linked Receptors Signal Transduction IV: Enzyme-Linked Receptors Signal Transduction V: Second Messengers Cell Division Overview of the Cell Cycle Mitosis Cytokinesis Meiosis Cell-Cycle Control and Cell Death The Cell-Cycle Control System Yeast as a Model System MPF, Cyclins and Kinases Control of Cell Numbers in Multicellular Organisms Apoptosis Dysregulation of the cell cycle: Cancer. Tissue Maintenance and Renewal, and its Disruption by Cancer Development II. Students will understand and be able to discuss the laboratory exercises. III. Students will participate in a research paper/presentation. Course evaluation: University grading system A 90-100 B 80-89 C 70-79 D 60-79 F below 60 I incomplete W withdrawal Attendance policy: As lab and lecture are combined, missing a single class period may cause you to miss both lab and lecture assignments for the day. Based on the reason for an absence, the instructor may allow the student to make up missed assignments. An absence will be marked if the student is absent or fails to return after a scheduled break. Any student who misses 25% of the scheduled classes may be dropped from the course Materials accepted by the instructor after the due date will be deducted 10 points per day (not class period) late. No make-up exams will be given unless arrangements are made in advance of the absence, except in the case of an emergency. Note: It is university policy that no otherwise qualified disabled person be excluded from participation in, be denied the benefits of, or be subject to discrimination under any educational program or activity in the University.