MARINE PHYLOGEOGRAPHY
RELEVANT PAPERS
PHYLOGEOGRAPHY: THE PAPER THAT STARTED IT ALL....
Avise, J.C., J. Arnold, R.M. Ball, E. Bermingham, T. Lamb, J.E. Neigel, C.A. Reeb, and N.C. Saunders. 1987.
Intraspecific Phylogeography: the mitochondrial DNA bridge between population genetics and systematics.
Ann. Rev. Ecol. Syst. 18:489-522.
GENE GENEALOGIES
Avise, J.C. 1989. Gene trees and organismal histories: a phylogenetic approach to population biology. Evolution
43:1192-1208.
Avise, J.C. and R.M. Ball, Jr. 1990. Principles of genealogical concordance in species concepts and biological
taxonomy. Oxford Surveys of Evol. Biol. 7:45-68.
Avise, J.C., J.E. Neigel, and J. Arnold. 1984. Demographic influences on mitochondrial DNA lineage survivorship in
animal populations. J. Mol. Evol. 20:99-105.
Avise, J.C., R.M. Ball., Jr., and J. Arnold. 1988. Current versus historical population sizes in vertebrate species with
high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral
mutations. Mol. Biol. Evol. 5:331-344.
Ball. R.M., Jr., J.E. Neigel, and J.C. Avise. 1990. Gene genealogies within the organismal pedigrees of random mating
populations. Evolution 44:360-370.
Bandelt, H.-J. et al. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16:37
Birky, C. W. Jr., T. Maruyama, and P. Fuerst. 1983. An approach to population and evolutionary genetic theory for
genes in mitochondria and chloroplasts, and some results. Genetics 103:513-527.
Excoffier, L. and P.E. Smouse. 1994. Using allele frequencies and geographic subdivisions to reconstruct gene trees
within species: molecular variance parsimony. Genetics 136:343-359.
Hudson, R.R. 1990. Gene genealogies and the coalescent process. Oxford Survey of Evolutionary Biology 7:1-44.
Hudson, R.R. 1998. Island models and the coalescent process. Mol. Ecol. 7:413-418.
Nee, S., E.C. Holmes, and P.H. Harvey. 1995. Inferring population history from molecular phylogenies. Phil. Trans.
Roy. Soc. London B: 349:25-31.
Palumbi, S. R., and C. S. Baker. 1994. Contrasting views of humpback whale population structure using mitochondrial
and nuclear DNA sequences. Mol. Biol. Evol. 11:426-435.
Pamilo, L., and M. Nei. 1988. Relationships between gene trees and species trees. Mol. Biol. Evol. 5:568-583.
Posada, D. and K.A. Crandall. 2001. Intraspecific gene genealogies: Trees grafting into networks. Trends Ecol. Evol.
16:37-45.
Strimmer, K. and V. Moulton. 2000. Likelihood analysis of phylogenetic networks using directed graphical models.
Mol. Biol. Evol. 17:875-881.
Xu, S. 2000. Phylogenetic analysis under reticulated evolution. Mol. Biol. Evol. 17:897-907.
PHYLOGEOGRAPHY PAPERS
ESTIMATING GENE FLOW AND POPULATION STRUCTURE
Bossardt, J.L. and D.P. Prowell. 1998. Genetic estimates of population structure and gene flow: limitations, lessons,
and new directions. Trends Ecol. Evol. 13:202-206.
Crandall, K.A. and A.R. Templeton. 1993. Empirical tests of some predictions from coalescent theory with application
to intraspecific phylogeny reconstruction. Genetics 134:959-969.
Excoffier, L. , P.E. Smouse, and J.M. Quattro. 1992. Analysis of molecular variance inferred from metric distances
among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
Fu, Y.-X. 1994. A phylogenetic estimator of effective population size or mutation rate. Genetics 136:685-692.
Garza, J.C. and E.G. Williamson. 2001. Detection of reduction in population size using data from microsatellite loci.
Mol. Ecol. 10:305-318.
Hedgecock D. 1994. Does variance in reproductive success limit effective population sizes of marine organisms? In:
Genetic and Evolution of Aquatic Organisms (ed. Beaumont AR), pp. 122–134. Chapman & Hall, London.
Hudson, R.R., M. Slatkin, and W.P. Maddison. 1992. Estimation of levels of gene flow from DNA sequence data.
Genetics 132:583-589.
Kuhner, M.K., J. Yamato, and J. Felsenstein. 1998. Maximum likelihood estimation of population growth rates based
on the coalescent. Genetics 149:429-434.
Luikart, G., W. B. Sherwin, B. M. Steele, and F. W. Allendorf. 1998. Usefulness of molecular markers for detecting
population bottlenecks via monitoring genetic change. Mol. Ecol. 7:963–974.
McCauley, D. 1991. Genetic consequences of local population extinction and recolonization. Trends Ecol. Evol. 6:5-8.
Moore, W.S. 1995. Inferring phylogenies from mtDNA variation: Mitochondrial-gene trees versus nuclear-gene trees.
Evolution 49:718-726.
Nee, S., E. C. Holmes, A. Rambaut, and P. H. Harvey 1995. Inferring population history from molecular
phylogenies. Phil. Trans. R. Soc. Lond. B 349:25-31.
Nei, M. and N. Takahata. 1993. Effective population size, genetic diversity, and coalescence time in subdivided
populations. J. Mol. Evol. 37:240-244.
Nei, M., T. Maruyama, and R. Chakraborty. 1975. The bottleneck effect and genetic variability in populations.
Evolution 29:1-10.
Neigel, J.E. 1997. A comparison of alternative strategies for estimating gene flow from genetic markers. Ann. Rev.
Ecol. Syst. 28:105-128.
Neigel, J.E., R.M. Ball, Jr., and J.C. Avise. 1991. Estimation of single generation migration distances from geographic
variation in animal mitochondrial DNA. Evolution 45:423-432.
Raymond, M., and F. Rousset. 1995. An exact test for population differentiation. Evolution 49: 1280-1283.
Rogers, A. R., and H. Harpending. 1992. Population growth makes waves in the distribution of pairwide genetic
differences. Mol. Biol. Evol. 9:552-569.
Slatkin, M. 1985. Gene flow in natural populations. Ann. Rev. Ecol. Syst. 16: 393-430.
Slatkin, M. 1987. Gene flow and the geographic structure of natural populations. Science 236:787-792.
2
PHYLOGEOGRAPHY PAPERS
Slatkin, M. 1993. Isolation by distance in equilibrium and non-equilibrium population. Evolution 47:264-279.
Slatkin, M., and W. P. Maddison. 1989. A cladistic measure of gene flow inferred from the phylogeny of alleles.
Genetics 123:603-613.
Slatkin, M., and N. H. Barton. 1989. A comparison of three indirect methods for estimating average levels of gene
flow. Evolution 43:1349-1368.
Takahata, N., and S. R. Palumbi. 1985. Extranuclear differentiation and gene flow in the finite island model. Genetics
109:441-457.
Templeton, A.R. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and
population history. Mol. Ecol. 7:381-398.
Wade, M.J. and D.E. McCauley. 1988. Extinction and recolonization: their effects on the genetic differentiation of local
populations. Evolution 42:995-1005.
Watterson, G. A. 1984. Allele frequencies after a bottleneck. Theor. Pop. Biol. 26:387-407.
Weir, B. S., and C. C. Cockerham. 1984. Estimating F-statistics for the analysis of population structure. Evolution
38: 1358–1370.
Whitlock, M.C. and D.E. McCauley. 1990. Some population genetic consequences of colony formation and
extinction: genetic correlations within founding groups. Evolution 44:1717-1724.
Whitlock, M.C. and N.H. Barton. 1997. The effective size of a subdivided population. Genetics 146:427-441.
Wright, S. 1951. The genetical structure of populations. Ann. Eugen. 15: 323–354.
PHYLOGENY AND SPECIATION
Avise, J. C., W. S. Nelson and H. Sugita. 1994. A speciational history of “living fossils”: molecular evolutionary
patterns in horseshoe crabs. Evolution 48:1986-2001.
Avise, J. C., and D. Walker. 1997. Pleistocene phylogeographic effects on avian populations and the speciation
process. Proc. R. Soc. Lond. B 265:457–463.
Avise, J.C. and K. Wollenburg. 1997. Phylogenetics and the origin of species. Proc. Natl. Acad. Sci. USA 94:77487755.
Avise, J.C., D. Walker, and G.C. Johns. 1998. Speciation durations and Pleistocene effects on vertebrate
phylogeography. Proc. Roy. Soc. Lond. B 265:1702-1712.
Barraclough, T.G., A.P. Vogler, and P.H. Harvey. 1998. Revealing the factors that promote speciation. Phil. Trans.
Roy. Soc. London B 353:241-249.
Barraclough, T.G, and A.P. Vogler. 2000. Detecting the geographical pattern of speciation from species-level
phylogenies. Am. Nat. 155:419-434.
Barton, N.H. and B. Charlesworth. 1984. Genetic revolutions, founder effects, and speciation. Ann. Rev. Ecol. Syst.
15:133-164.
Briggs, J.C. 1999. Modes of speciation: Marine Indo-West Pacific. Bull. Mar. Sci. 65:645-656.
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PHYLOGEOGRAPHY PAPERS
Collin, R. 2003. Phylogenetic relationships among calyptraeid gastropods and their implications for the
biogeography of speciation. Syst. Biol. 52:618–640.
Grassle, J.P. and J.F Grassle. 1976. Sibling species in the marine pollution indicator Capitella (Polychaeta).
Science 192:567-569.
Hart, M. W., M. Byrne, and M. J. Smith. 1997. Molecular phylogenetic analysis of life-history evolution in asterinid
starfish. Evolution 51:1848–1861.
Hatta, M., H. Kukami, W. Wang, et al. 1999. Reproductive and genetic evidence for a reticulate evolutionary
history of mass-spawning corals. Mol. Biol. Evol. 16:1607-1613.
Hellberg, M. E. 1998. Sympatric sea shells along the sea’s shore: The geography of speciation in the marine
gastropod Tegula. Evolution 52:1311-1324.
Hewitt, G.M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J.
Linnean Soc. 58:247-276.
Jablonski, D. 1993. The tropics as a source of evolutionary novelty through geological time. Nature 364:142-144.
Johns, G, and J.C. Avise. 1998. Tests for ancient species flocks based on molecular phylogenetic appraisals of Sebastes
rockfishes and other marine fishes. Evolution 52:1135-1146.
Jones, A., G.I. Moore, C. Kvarnemo, D. Walker, and J.C. Avise. 2003. Sympatric speciation as a consequence of
male pregnancy in seahorses. Proc. Natl. Acad. Sci. USA 100:6598-6603.
Klicka, J. and R.M. Zink. 1997. The importance of recent ice ages in species: a failed paradigm. Science 277:1666-1669.
Knowlton, N. 1993. Sibling species in the sea. Annu. Rev. Ecol. Syst. 24:189-216.
Knowlton, N. 2000. Molecular genetic analyses of species boundaries in the sea. Hydrobiologia 420:73-90.
Mayr, E. 1954. Geographic speciation in tropical echinoids. Evolution 8: 1-18.
McCartney, M.A., G. Keller, and H.A. Lessios. 2000. Dispersal barriers in tropical oceans and speciation in
Atlantic and eastern Pacific sea urchins of the genus Echinometra. Mol. Ecol. 9:1391-1400.
McCune, A.R. 1997. How fast is speciation? Molecular, geological, and phylogenetic evidence from adaptive
radiations of fishes. Pp. 585-610 In: Molecular Evolution and Adaptive Radiation. T.J. Givnish and K.J.
Sytsma (eds). Cambridge University Press, Cambridge, U.K.
McCune, A. R. and N. R. Lovejoy. 1998. The relative rates of sympatric and allopatric speciation in fishes: Tests
using DNA sequence divergence between sister species and among clades. Pp. 172-185 in D. J. Howard and
S. H. Berlocher, eds. Endless forms: Species and speciation. Oxford University Press, Oxford.
McManus, J. W. 1985. Marine speciation, tectonics and sea-level changes in SouthEast Asia. Proc. 5th Intl. Coral
Reef Congress. 4:133-138.
Palumbi, S.R. 1994. Genetic divergence, reproductive isolation, and marine speciation. Ann. Rev. Ecol. Syst. 25:547572.
Palumbi, S. R., G. Grabowski, T. Duda, L. Greyer, and N. Tachino. 1997. Speciation and population genetic
structure in tropical Pacific sea urchins. Evolution 51:1506-1517.
Pigeon, D., A. Chouinard, and L. Bernatchez. 1997. Multiple modes of speciation involved in the parallel evolution of
sympatric morphotypes of lake whitefish (Coregonus clupeaformis, Salmonidae). Evolution 51:196-205.
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PHYLOGEOGRAPHY PAPERS
Potts, D. C. 1985. Sea-level fluctuations, growth and speciation in Scleractinia. Proc. 5 th Intl. Coral Reef Congress.
4:127-132.
Schluter, D. 1996. Ecological speciation of postglacial fishes. Phil. Trans. R. Soc. Lond. B 351:807-814.
Shaklee, J. B., C. S. Tamaru, and R. S. Waples. 1982. Speciation and evolution of marine fishes studied by the
electrophoretic analysis of proteins. Pac. Sci. 36:141-157.
Streelman, J.T., Alfaro, M., Westneat, M.W., Bellwood, D.R. & Karl, S.A. 2002 Evolutionary history of the
parrotfishes: biogeography, ecomorphology, and comparative diversity. Evolution, 56, 961–971.
Van Oppen, M.J.H., B.L. Willis, T. van Rheede, and D.J. Miller. 2002. Spawning times, reproductive
compatibilities, and genetic structuring in the Acropora aspera group: evidence for natural hybridization
and semi-permeable species boundaries in corals. Mol. Ecol. 11:1363-1376.
Volmer, S.V. and S.R. Palumbi. 2002. Hybridization and the evolution of reef coral diversity. Science 296:20232025.
COMPARATIVE PHYLOGEOGRAPHY
Avise, J. C. 1992. Molecular population structure and the biogeographic history of a regional fauna: A case history
with lessons for conservation biology. Oikos 63:62-76.
Benzie, J. A. H. 1998. Genetic structure of marine organisms and SE Asian biogeography. Pp. 197-209 in R. Hall
and J. D. Holloway, eds. Biogeography and geological evolution of SE Asia. Backhuys Publishers, Leiden,
The Netherlands.
Benzie, J. A. H. 1999. Genetic structure of coral reef organisms: Ghosts of dispersal past. Amer. Zool. 39:131-145.
Bermingham, E., and H.A. Lessios. 1993. Rate variation of protein and mtDNA evolution as revealed by sea urchins
separated by the Isthmus of Panama. Proc. Natl. Acad. Sci. USA 90:2734-2738.
Bermingham, E., and C. Moritz. 1998. Comparative phylogeography: concepts and applications. Mol. Ecol. 7:499517.
Bermingham, E., S. S. McCafferty, and A. P. Martin. 1997. Fish biogeography and molecular clocks: perspectives
from the Panamanian isthmus. Pp. 113-128 in T. D. Kocher and C. A. Stepien, eds. Molecular systematics of
fishes. Academic Press, New York
Bernatchez, L. and C.C. Wilson. 1998. Comparative phylogeography of Nearctic and Palearctic fishes. Mol. Ecol.
7:431-452.
Grant, W.S. 1987. Genetic divergence between congeneric Atlantic and Pacific Ocean fishes. Pp. 225-246 in R.
Ryman and F.M. Utter, eds. Population genetics and fishery management. Univ. of Washington Press,
Seattle, WA.
Grant, W. S., and R. S. Waples. 2000. Spatial and temporal scales of genetic variability in marine species:
implications for fisheries oceanography. In P. J. Harrison and T. Parsons, eds. Fisheries Oceanography: A
science for the new millennium. Blackwell Sci., Oxford, UK.
Graves, J.E. 1998. Molecular insights into the population structure of cosmopolitan marine fishes. J. Heredity
89:427-437.
Hellberg, M.E. 1996. Dependence of gene flow on geographic distance in two solitary corals with different larval
dispersal capabilities. Evolution 50:1167-1175.
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PHYLOGEOGRAPHY PAPERS
Johns, G.C. and J.C. Avise. 1998. A comparative summary of genetic distances in the vertebrates from the
mitochondrial cytochrome b gene. Mol. Biol. Evol. 15:1481-1490.
Hoelzel AR, Dahlheim M, Stern SJ. 1998. Low genetic variation among killer whales (Orcinus orca) in the eastern
North Pacific and genetic differentiation between foraging specialists. Journal of Heredity 89: 121–128.
Knowleton, N., L.A. Weigt, L.A. Solorzano, D.K. Mills & E. Bermingham. 1993. Divergence in proteins,
mitochondrial DNA, and reproductive compatibility across the Isthmus of Panama. Science 260:1629-1632.
Lessios, H. A. 1981. Divergence in allopatry: molecular and morphological differentiation between sea urchins
separated by the Isthmus of Panama. Evolution 35:618-634.
Lessios, H.A., B.D. Kessing, and D.R. Robertson. 1998. Massive gene flow across the world’s most potent marine
biogeographic barrier. Proc. Roy. Soc. London (Ser. B) 265: 583-588.
McMillan, W.O. and S. Palumbi. 1995. Concordant evolutionary patterns among Indo-West Pacific butterflyfishes.
Proc. R. Soc. London B 260:229-236.
Moritz, C., Faith D.P. 1998. Comparative phylogeography and the identification of genetically divergent areas for
conservation. Mol. Ecol. 7: 419-430.
Rocha, L.A., A.L. Bass, D.R. Robertson, and B.W. Bowen. 2002. Adult habitat preferences, larval dispersal, and the
comparative phylogeography of three Atlantic surgeonfishes (Teleostei: Acanthuridae) Molecular Ecology
11:243-252.
Schneider C.J., Cunningham M., Moritz C. 1998. Comparative phylogeography and the history of endemic vertebrates
in the Wet Tropics rainforests of Australia. Mol. Ecol. 7: 487-498.
Taberlet, P., L. Fumagalli, A.-G. Wust-Saucy, and J.-F. Cosson. 1998. Comparative phylogeography and postglacial
colonization routes in Europe. Mol. Ecol. 7:453-464.
Turner, T.F., J.C. Trexler, D.N. Kuhn, and H.W. Robison. 1996. Life-history variation and comparative
phylogeography of darters (Pisces: Percidae) from the North American central highlands. Evolution 50:20232036.
Vawter, A.T., R. Rosenblatt, and G. C. Gorman. 1980. Genetic divergence among fishes of the eastern Pacific and
Caribbean: support for the molecular clock. Evolution 34:705-711.
Waples, R.S. 1987. A multispecies approach to the analysis of gene flow in marine shore fishes. Evolution 41:385400.
Ward, R.D., M. Woodward, and D.O.F. Skibinski. 1994. A comparison of genetic diversity levels in marine,
freshwater, and anadromous fishes. J. Fish Biol. 44:213-227.
Wares, J.P. and C.W. Cunningham. 2001. Phylogeography and historical ecology of the North Atlantic intertidal.
Evolution 55: 2455–2469
Wares, J.P., S.D. Gaines, and C.W. Cunningham. 2001. A comparative study of asymmetric migration events across a
marine biogeographic boundary. Evolution 55:295-306.
Zink, R.M. 1996. Comparative phylogeography in North American birds. Evolution 50:308-317.
MARINE BIOGEOGRAPHY
Bellwood, D.R. & P.C. Wainwright. 2002. The history and biogeography of fishes on coral reefs. Coral reef fishes
(ed. P.F. Sale), pp. 5–32. Academic Press, San Diego.
6
PHYLOGEOGRAPHY PAPERS
Bonhomme, F. and S. Planes. 2002. Some evolutionary arguments about what maintains the pelagic interval in reef
fishes. Environ. Biol. Fishes 59:365-383.
Briggs, J.C. 1960. Fishes of worldwide (circumtropical) distribution. Copeia. 1960:171-180.
Briggs, J.C. 1961. The East Pacific barrier and the distribution of marine shore fishes. Evolution 15:545-554.
Briggs, J.C. 1970. A faunal history of the North Atlantic Ocean. Syst. Zool. 19: 19-34.
Briggs, J.C. 1987. Antitropicality and vicariance. Syst. Zool. 36:206-207.
Briggs, J.C. 1999. Coincident biogeographic patterns: Indo-West Pacific. Evolution 53:326–335.
Briggs, J.C. 2003. Marine centres of origin as evolutionary engines. Journal of Biogeography 30: 1–18.
Brothers, E. B., and R. E. Thresher. 1985. Pelagic duration, dispersal, and the distribution of Indo-Pacific coral reef
fishes. Pp. 53-69 in M. L. Reaka, ed. The ecology of deep and shallow coral reefs. Vol. 3. NOAA S. Ser.
Undersea. Rockville, MD.
Croizat, L., G. Nelson, and D.E. Rosen. 1974. Centers of origin and related concepts. Syst. Zool. 23:265-287.
Cunningham, C.W. and T.M. Collins. 1994. Developing model systems for molecular biogeography: vicariance and
interchange in marine invertebrates. Pp. 405-433 In: Molecular Ecology and Evolution: approaches and
applications (Eds B. Schierwater, B. Streit, G.P. Wagner, and R. DeSalle) Birkhauser, Basel, Switzerland.
Cunningham, C.W. and T.M. Collins. 1998. Beyond area relationships: extinction and recolonization in molecular
marine biogeography. Pp. 297-322 In: Molecular Approaches to Ecology and Evolution (Eds. R. DeSalle, B.
Schierwater,). Birkhauser Verlag, Basel, Switzerland.
Floeter, SR, RZP Guimaraes, LA Rocha, CEL Ferreira, CA Rangel, and JL Gasparini. 2001. Geographic variation in
reef-fish assemblages along the Brazilian coast. Global Ecology & Biogeography 10:423–431
Hedgecock, D. 1986. Is gene flow from pelagic larval dispersal important in the adaptation and evolution of marine
invertebrates? Bull. Mar. Sci.: 39:550-564.
Hedgpeth, J.W. 1957. Marine Biogeography. Pp. 359-382 In Treatise on Marine Ecology and Paleoecology, Vol. 1.
Geological Soc. America, Mem. 67.
Hubbs, C.L. 1952. Antitropical distribution and fishes and other organisms. Proc. Seventh Pacific Sci. Congr. 3:324329.
Ingolfsson, A. 1995. Floating clups of seaweed around Iceland: natural microcosm and a means of dispersal for shore
fauna. Mar. Biol. 122:13-21.
Jablonski, D. 1986. Larval ecology and macroevolution in marine invertebrates. Bull. Mar. Sci.: 39:565-587.
Jackson, J. B. C. 1994. Constancy and change of life in the sea. Phil. Trans. R. Soc. Lond. B. 344:55-60.
Jones, G.P., M.J. Milicich, M.J. Emslie, and C. Nunow. 1999. Self-recruitment in a coral reef fish population.
Nature 402:802-804.
Lindberg, D.R. 1991. Marine biotic exchange between the northern and southern hemispheres. Paleobiology 17:308324.
McDowall, R. M. 1978. Generalized tracks and dispersal in biogeography. Syst. Zool. 27:88-104.
7
PHYLOGEOGRAPHY PAPERS
Mora, C., Chittaro, P.M., Sale, P.F., Kritzler, J.P. & Ludsin, S.A. 2003. Patterns and processes in reef fish diversity.
Nature 421: 933–936.
Palumbi, S.R. 1996. What can molecular genetics contribute to marine biogeography? An urchin's tale. Journal of
Experimental Marine Biology and Ecology 203:75-92.
Paulay, G. 1990. Effects of late Cenozoic sea-level fluctuations on the bivalve faunas of tropical oceanic islands. J.
Biogeogr. 19:593-609.
Planes, S. 2001. Biogeography and larval dispersal inferred from population genetic analysis. Coral reef fishes (ed.
P.F. Sale), pp. 201–220. Academic Press, San Diego.
Rosen, D. E. 1975. A vicariance model of Caribbean biogeography. Syst. Zool. 24: 431-464.
Scheltema, R. S. 1971. The dispersal of the larvae of shoal-water benthic invertebrate species over long distances by
ocean currents. Pp. 7-28 in P. J. Crisp, ed. 4th Euro. Mar. Biol. Symp. Cambridge Univ. Press, Cambridge.
Scheltema, R. S. 1995. The relevance of passive dispersal for the biogeography of Caribbean mollusks. Am. Malacol.
Bull. 11: 99-115.
Schultz, E.T. and R.K. Cowen. 1994. Recruitment of coral reef fishes to Bermuda: local retention or long-distance
transport? Mar. Ecol. Prog. Ser. 109:15-28.
Shulman, M. J. 1998. What can population genetics tell us about dispersal and biogeographic history of coral-reef
fishes? Aust. J. Ecol. 23:216-225.
Swearer, S.E., J.E. Caselle, D.W. Lea, and R.R. Warner. 1999. Larval retention and recruitment in an island
population of coral-reef fish. Nature 402:799-802.
Valentine, J. W. 1984. Climate and evolution in the shallow sea. Pp. 265-277 in P. J. Brenchley, ed. Fossils and
climate. Wiley and Sons, New York.
Vermeij, G.J. 1991. Anatomy of an invasion: the trans-Arctic interchange. Paleobiology 17:281-307.
Wiley, E.O. 1988. Vicariance biogeography. Ann. Rev. Ecol. Syst. 19:513-542.
MARINE PHYLOGEOGRAPHY
Alvarado-Bremer, J.R., J. Mejuto, T. Greig, and B. Ely. 1996. Global population structure of the swordfish (Xiphias
gladius L.) as revealed by analysis of the mitochondrial DNA control region. J. Exp. Mar. Biol. Ecol.
197:295-310.
Andersen, N.M., L. Cheng, J. Damgaard, and F.A.H. Sperling. 2000. Mitochondrial DNA sequence variation and
phylogeography of oceanic insects (Hemiptera: Gerridae: Halobates spp.) Marine Biology 136:421-430.
Arndt, A., and M.J. Smith. 1998. Genetic diversity and population structure in two species of sea cucumber: differing
patterns according to mode of development. Mol. Ecol. 7:1053-1064.
Avise, J.C., G.S. Helfman, N.C. Saunders, and L.S. Hale. 1986. Mitochondrial DNA differentiation in North Atlantic
eels: population genetic consequences of an unusual life history pattern. Proc. Natl. Acad. Sci. USA
83:4350-4354.
Avise, J.C., W.S. Nelson, B.W. Bowen, and D. Walker. 2000. Phylogeography of colonially-nesting seabirds, with
special reference to global matrilineal patterns in the sooty tern (Sterna fuscata). Mol. Ecol. 9:1783-1792.
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PHYLOGEOGRAPHY PAPERS
Baker, C.S., R.W. Slade, J.L. Bannister, R.B. Abernethy, M.T. Weinrich, J. Lein, J. Urban, P. Corkeron, J.
Calmabokidis, O. Vasquez, and S.R. Palumbi. 1994. Hierarchical structure of mitochondrial DNA gene flow
among humpback whales, Megaptera novaeangliae, world-wide. Mol. Ecol. 3:313-328.
Baldwin, J.D., A.L. Bass, B.W. Bowen, and W.H. Clark, Jr. 1998. Molecular phylogeny and biogeography of the
marine shrimp genusPenaeus. Molecular Phylogenetics and Evolution 10:399-407.
Banford, H. M., E. Bermingham, B. B. Collette, and S. S. McCafferty. 1999. Phylogenetic systematics of the
Scomberomorus regalis (Teleostei: Scombridae) species group: molecules, morphology, and biogeography of
spanish mackerels. Copeia 1999: 596-613.
Barber, P.H., S.R. Palumbi, M.V. Erdmann, and M.K. Moosa. 2002. Sharp genetic breaks among populations of
Haptosquilla pulchella (Stomatopoda) indicate limits to larval transport: patterns, causes, and
consequences. Molecular Ecology 11:659–674.
Bay, L.K., JH Choat, L. van Herwerden, and D.R. Robertson. 2004. High genetic diversities and complex genetic
structure in an Indo-Pacific tropical reef fish ( Chlorurus sordidus): evidence of an unstable evolutionary
past? Marine Biology 144:757–767.
Benzie, J. A. H., and S. T. Williams. 1997. Gene flow among giant clam (Tridacna maxima) populations in the
West Pacific is not consistent with dispersal by present-day ocean currents. Evolution 51:768-783.
Blackwell Science, Ltd
Benzie, J.A.H., E. Ballment, A .T. Forbes, N . T. Demetriades, K. Sugama, Haryanti, and S . Moria. 2002.
Mitochondrial DNA variation in Indo-Pacific populations of the giant tiger prawn, Penaeus monodon.
Molecular Ecology 11: 2553-2569
Bernardi, G. 2000. Barriers to gene flow in Embiotoca jacksoni, a marine fish lacking a pelagic larval stage.
Evolution 54:226-237.
Bernardi, G., S.J. Hollbrook, and R.J. Schmitt. 2001. Gene flow at three spatial scales in a coral reef fish, the threespot dascyllus, Dascyllus trimaculatus. Marine Biology 138:457-465.
Bowen, B. W. and J. C. Avise. 1990. Genetic structure of Atlantic and Gulf of Mexico populations of sea bass,
menhaden, and sturgeon: influence of zoogeographic factors and life history patterns. Mar. Biol. 107:371381.
Bowen, B.W. and W.S. Grant. 1997. Phylogeography of the sardines (Sardinops spp.): assessing biogeographic
models and population histories in temperate upwelling zones. Evolution 51:1601-1610.
Bowen, B.W., A.B. Meylan, J.P. Ross, C.J. Limpus, G.H. Balazs and J.C. Avise. 1992. Global population structure
and natural history of the green turtle (Chelonia mydas) in terms of matriarchal phylogeny. Evolution 46:
865-881.
Bowen, B.W., N. Kamezaki, C.J. Limpus, G.H. Hughes, A.B. Meylan and J.C. Avise. 1994. Global phylogeography
of the loggerhead turtle (Caretta caretta) as indicated by mitochondrial DNA haplotypes. Evolution
48:1820-1828.
Bowen, B.W., A.M. Clark, F.A. Abreu-Grobois, A. Chavez, H. Reichart, and R.J. Ferl. 1998. Global phylogeography
of the ridley sea turtles (Lepidochelys spp.) inferred from mitochondrial DNA sequences. Genetica 101:179189.
Bowen, B.W., A.L. Bass, L.A. Rocha, W.S. Grant and D.R. Robertson. 2001. Phylogeography of the trumpetfish
(Aulostomus spp.): ring species complex on a global scale. Evolution 55:1029-1039.
Bucklin, A. and P.H. Wiebe. 1998. Low mitochondrial diversity and small effective population sizes of the copepods
Calanus finmarchicus and Nannocalanus minor: possible impact of climate variation during recent glaciation.
J. Heredity 89:383-392.
9
PHYLOGEOGRAPHY PAPERS
Bucklin, A., C. Caudill, and M. Guarnieri. 1998. Population genetics and phylogeny of marine planktonic copepods.
Pp. 301-317 In: Molecular Approaches to the Study of the Ocean. K. Cooksey (ed) Chapman and Hall,
London.
Buonaccorsi, V.P., J. R. McDowell and J. E . Graves. 2001. Reconciling patterns of inter-ocean molecular variance
from four classes of molecular markers in blue marlin (Makaira nigricans). Molecular Ecology 10: 1179–
1196
Burridge, C.P. 2002. Antitropicality of Pacific fishes: molecular insights. Environmental Biology of Fishes 65: 151–
164
Burton, R. S. 1998. Intraspecific phylogeography across the Point Conception biogeographic boundary. Evolution
52:734-745.
Chenoweth, S.F. and J.M. Hughes. 1997. Genetic population structure of the catadromous perciform: Macquaria
novemaculeata (Percichthyidae). J. Fish Biol. 50:721-733.
Chenoweth, S. F., J. M. Hughes, C. P. Keenan, and S. Lavery. 1998. When oceans meet: A teleost shows secondary
intergradation at an Indian-Pacific interface. Proc. R. Soc. Lond. B 265:415-420.
Chow, S., and S. Ushiama. 1995. Global population structure of albacore (Thunnus alalunga) inferred by RFLP
analysis of the mitochondrial ATPase gene. Mar. Biol. 123:39-45.
Chubb, AL, RM Zink, and JM Fitzsimons. 1998. Patterns of mtDNA variation in Hawaiian freshwater fishes: the
phylogeographic consequences of amphidromy. Journal of Heredity 89:8-16
Colborn, J., R.E. Crabtree, J.B. Shaklee, E. Philer, and B.W. Bowen. 2001. The evolutionary enigma of bonefishes
(Albula spp.): cryptic species and ancient separations in a globally-distributed shorefish. Evolution 55:807820.
Craddock, C., W.R. Hoeh, R.A. Lutz, and R.C. Vrijenhoek. 1995. Extensive gene flow among mytilid
(Bathymodiolus thermophilus) populations from hydrothermal vents of the eastern Pacific. Mar. Biol.
124:137-146.
Crosetti, D., W.S. Nelson, and J.C. Avise. 1994. Pronounced genetic structure of mitochondrial DNA among
populations of the circumglobally distributed grey mullet (Mugil cephalus). J. Fish Biol. 44:47-58.
Cunningham, C.W. and T.M. Collins. 1994. Developing model systems for molecular biogeography: vicariance and
interchange in marine invertebrates. Pp. 405-433 In: Molecular Ecology and Evolution: approaches and
applications (Eds. B. Shierwater, B. Streit, G.P. Wagner, R. DeSalle). Birkhauser Verlag, Berlin.
Doherty, P.J., S. Planes, and P. Mather. 1995. Acanthochromis polyacanthus, a fish lacking larval dispersal has
genetically differentiated populations at local and regional scales on the Great Barrier reef. Mar. Biol.
121:11-21.
Dutton, P.H., B.W. Bowen, D.W. Owens, A. Barragan and S.K. Davis. 1999. Global phylogeography of the
leatherback turtle, Dermochelys coriacea. J. Zoology: 248:397-409.
FitzSimmons NN, Moritz C, Limpus CJ, Pope L, Prince R . 1997. Geographic structure of mitochondrial and
nuclear gene polymorphisms in Australian green turtle populations and male-biased gene flow. Genetics
147:1843–1854.
Garcia-Rodriguez, A.I., B.W. Bowen, D. Domning, A. Mignucci-Giannoni, M. Marmontel, R. A. Montoya-Ospina,
B. Morales-Vela, M. Rudin, R.K. Bonde, and P.M. McGuire. 1998. Phylogeography of the West Indian
manatee (Trichechus manatus): how many populations and how many taxa? Mol. Ecol. 7:1137-1149.
10
PHYLOGEOGRAPHY PAPERS
Geller, J. 1996. Molecular approaches to the study of marine biological invasions. Pp. 119-132 In: Molecular
Zoology; advances, strategies, and protocols (eds. J. R. Ferraris and S.R. Palumbi). Wiley-Liss, NY.
Geller, J.B., E.D. Walton, E.D. Grosholz, and G.M. Ruiz. 1997. Cryptic invasions of the crab Carcinus detected by
molecular phylogeography. Mol. Ecol. 6:901-906.
Grant, W.S., and R.W. Leslie. 1993. Biochemical divergence and biogeography of anglerfish of the genus Lophius
(Lophiiformes). J. Zool. London 231:465-485.
Grant, W. S. and R. W. Leslie. 1996. Late Pleistocene dispersal of Indian-Pacific sardine populations in an ancient
lineage of the genus Sardinops. Mar. Biol. 126:133-142.
Grant, W.S. and B.W. Bowen. 1998. Shallow population histories in deep evolutionary lineages of marine fishes:
insights from the sardines and anchovies and lessons for conservation. J. of Heredity 89: 415-426.
Graves, J.E., and J.R. McDowell. 1995. Inter-ocean genetic divergences of istiophorid billfishes. Mar. Biol.
122:193-203.
Hoelzel, A.R., M. Dahlheim, and S.J. Stern. 1998. Low genetic variation among killer whales (Orcinus orca) in the
eastern North pacific and genetic differentiation between foraging specialists. J. Heredity 89:121-128.
Karl SA, Bowen BW, Avise JC. 1992. Global population genetic structure and male-mediated gene flow in the green
turtle (Chelonia mydas): RFLP analysis of anonymous nuclear loci. Genetics 131: 163–173.
Lavery, S., C. Moritz, and D. R. Fielder. 1996. Indo-Pacific population structure and evolutionary history of the
coconut crab Birgus latro. Mol. Ecol. 5:557-570.
Lecomte, F.L., W.S. Grant, J.J. Dodson, R. Rodriguez-Sanchez, and B.W. Bowen. 2004. Living with uncertainty:
genetic imprints of climate shifts in East Pacific anchovy (Engraulis mordax) and sardine (Sardinops
sagax). Molecular Ecology 13: 2169–2182.
Lee, C.E. 2000. Global phylogeography of a cryptic copepod species complex and reproductive isolation between
genetically proximate “populations”. Evolution 54:2014-2027.
Lessios, H.A., B.D. Kessing, and D.R. Robertson. 1998. Massive gene flow across the world’s most potent marine
biogeographic barrier. Proc. Roy. Soc. London (Ser. B) 265: 583-588.
Lessios, H. A., B. D. Kessing, D. R. Robertson, and G. Paulay. 1999. Phylogeography of the pantropical sea urchin
Eucidaris in relation to land barriers and ocean currents. Evolution 53: 806-817.
Magoulas, A., N. Tsimenides, and E. Zouros. 1996. Mitochondrial DNA phylogeny and the reconstruction of the
population history of a species: the case of the European anchovy (Engraulis encrasicolus). Mol. Biol.
Evol. 13:178-190.
McLean, J.E., D.E. Hay, and E.B. Taylor. 1999. Marine population structure in an anadromous fish: life history
influences patterns of mitochondrial DNA diversity in the eulachon, Thaleichthyes pacificus. Mol. Ecol.
8:S143-S158.
McMillan, W.O. and E. Bermingham. 1996. The phylogeographic pattern of mitochondrial DNA variation in the
Dall’s porpoise Phocoenoides dalli. Mol. Ecol. 5:47-61.
McMillan, W.O. and S. Palumbi. 1995. Concordant evolutionary patterns among Indo-West Pacific butterflyfishes.
Proc. R. Soc. London B 260:229-236.
McMillan, W.O. and S.R. Palumbi. 1997. Rapid rate of control region evolution in Pacific butterflyfishes
(Chaetodontidae). J. Mol. Evol. 45:473-484.
11
PHYLOGEOGRAPHY PAPERS
Mukai, T, K. Naruse, T. Sato, A. Shima, and M. Morisawa. 1997. Multiregional introgressions inferred from the
mitochondrial DNA phylogeny of a hybridizing species complex of gobiid fishes, genus Tridentiger. Mol.
Biol. Evol. 14:1258-1265.
Murphy, W.J. and G.E. Collier. 1997. A molecular phylogeny for Aplocheiloid fishes (Atherinomorpha,
Cyprinodontiformes): the role of vicariance and the origins of annualism. Mol. Biol. Evol. 14:790-799.
Muss, A., D.R. Robertson, C.A. Stepien, P. Wirtz, and B.W. Bowen. 2001. Phylogeography of the genus
Ophioblennius: the role of ocean currents and geography in reef fish evolution. Evolution 55:561-572.
Neigel, J.E. 1997. Population genetics and demography of marine species. Pp. 274-292 In: Marine Biodiversity;
patterns and processes (eds. R.F.G. Ormond, J.D. Gage, M.V. Angel), Cambridge Univ. Press, Cambridge,
UK.
O’Corry-Crowe, G.M., R.S. Suydam, A. Rosenberg, K.J. Frost, and A.E. Dizon. 1997. Phylogeography, population
structure and dispersal patterns of the beluga whale Delphinapterus leucas in the western Nearctic revealed by
mitochondrial DNA. Mol. Ecol. 6:955-970.
O’Foighil, D., and M.J. Smith. 1996. Phylogeography of an asexual marine clam complex, Lasaea, in the northeastern
Pacific based on cytochrome oxidase III sequence variation. Mol. Phylogen. Evol. 6:134-142.
O’ Foighil, D., and C. J. Jozefowicz. 1999. Amphi-Atlantic phylogeography of direct-developing lineages of Lasaea,
a genus of brooding bivalves. Mar. Biol. 135: 115-122.
Ovenden, J.R., D.J. Brasher, and R.W.G. White. 1992. Mitochondrial DNA analyses of the red rock lobster Jasus
edwardsii supports an apparent absence of population subdivisions throughout Australasia. Mar. Biol.
112:319-326.
Palumbi, S.R. 1996. Macrospatial genetic structure and speciation in marine taxa with high dispersal abilities. Pp. 101118 In: Molecular Zoology; advances, strategies, and protocols (eds. J. R. Ferraris and S.R. Palumbi). WileyLiss, NY.
Palumbi, R.R. 1997. Molecular biogeography of the Pacific. Coral Reefs 16, Suppl:S47-S52.
Palumbi, S. R., and C. S. Baker. 1994. Contrasting views of humpback whale population structure using mitochondrial
and nuclear DNA sequences. Mol. Biol. Evol. 11:426-435.
Pichler, F.B., S.M. Dawson, E. Slooten, and C.S. Baker. 1998. Geographic isolation of Hector’s dolphin populations as
described by mitochondrial DNA sequences. Conserv. Biol. 12:676-682.
Planes, S. and C. Fauvolet. 2002. Isolation by distance and vicariance drive genetic structure of a coral reef fish in the
Pacific Ocean. Evolution 56:378-399.
Quattro, J.M., T.W. Greig, D.K. Coykendoll, B.W. Bowen, and J.D. Baldwin. 2002. Genetic issues in aquatic
species management: the shortnose sturgeon (Acipenser brevirostrum) in the southeastern United States.
Conservation Genetics 3:155-166.
Rocha, L.A., A.L. Bass, D.R. Robertson, and B.W. Bowen. 2002. Adult habitat preferences, larval dispersal, and the
comparative phylogeography of three Atlantic surgeonfishes (Teleostei: Acanthuridae) Molecular Ecology
11:243-252.
Rosel, P.E. and B.A. Block. 1996. Mitochondrial control region variability and global population structure in the
swordfish, Xiphias gladius. Mar. Biol. 125:11-22.
Rosel, P.E., A.E. Dizon, and M.G. Heygood. 1995. Variation of the mitochondrial control region in populations of
the harbour porpoise, Phocoena phocoena, on interoceanic and regional scales. Can. J. Fish. Aquatic. Sci.
52:1210-1219.
12
PHYLOGEOGRAPHY PAPERS
Rosenblatt, R. H., and R. S. Waples. 1986. A genetic comparison of allopatric populations of shore fish species from
the eastern and central Pacific Ocean: dispersal or vicariance? Copeia 1986:275-284.
Blackwell Publishing, Ltd.
Sotka, E.E., J.P. Wares, J.A. Barth, R.K. Grosberg, and S.R. Palumbi. 2004. Strong genetic clines and geographical
variation in gene flow in the rocky intertidal barnacle Balanus glandula. Molecular Ecology 13:2143-2156.
Schneider-Broussard, R., D.L. Felder, C.A. Chlan et al. 1998. Tests of phylogeographic models with nuclear and
mitochondrial DNA sequence variation in the stone crabs, Menippe adina and Menippe mercenaria.
Evolution 52:1671-1678.
Scoles, D.R., B.B. Collette, and J.E. Graves. 1998. Global phylogeography of the mackerels of the genus Scomber.
Fish. Bull. 96:823-842.
Shulman, M.J. and E. Bermingham. 1995. Early life histories, ocean currents, and the population genetics of Caribbean
reef fishes. Evolution 49:897-910.
Stanhope, M.J., B. Hartwick, and D. Baillie. 1993. Molecular phylogeographic evidence for multiple shifts in habitat
preference in the diversification of an amphipod species. Mol. Ecol. 2:99-112.
Stepien, C.A. and R.H. Rosenblatt. 1996. Genetic divergence in antitropical marine fishes (Trachurus, Merluccius,
and Scomber) between North and South America. Copeia 1996:586-598.
Taylor D.J., and D. O’Foighil. 2000. Transglobal comparisons of nuclear and mitochondrial genetic structure in a
marine polyploid clam (Lasaea, Lasaeidae). Heredity 84:321-330.
Terry A, G. Bucciarelli, and G. Bernardi. 2000. Restricted gene flow and incipient speciation in disjunct Pacific Ocean
and Sea of Cortez populations of a reef fish species, Girella nigricans. Evolution 54:652-659.
Tringali, M. D., and R. R. Wilson Jr. 1993. Differences in haplotype frequencies of mtDNA of the Spanish sardine
Sardinella aurita between specimens from the eastern Gulf of Mexico and southern Brazil. Fish. Bull. 91: 362370.
van Oppen, M.J.H., O.E. Diekmann, C. Wiencke, W.T. Stam, and J.L. Olsen. 1994. Tracking dispersal routes:
Phylogeography of the Arctic-Antarctic disjunct seaweed Acrosiphonia arcta (Chlorophyta). J. Phycol. 30:6780.
Van Syoc, R.J. 1994. Genetic divergence between subpopulations of the eastern Pacific goose barnacle Pollicipes
elegans: Mitochondrial cytochrome c subunit I nucleotide sequences. Mol. Mar. Biol. Biotech. 3:338-346.
Weider, L.J, and A. Hobaek. 1997. Postglacial dispersal, glacial refugia, and clonal structure in Russian/Siberian
populations of the arctic Daphnia pulex complex. Heredity 78:363-372.
Wenink, P.A., A.J. Baker, H.-U. Rosner, and M.G.J. Tilanus. 1996. Global mitochondrial DNA phylogeography of
holarctic breeding dunlins (Calidris alpina). Evolution 50:318-330.
Williams, S. T., and J. A. H. Benzie. 1997. Indo-West Pacific patterns of genetic differentiation in a high-dispersal
starfish Linckia laevigata. Mol. Ecol. 6:559-573.
PHYLOGEOGRAPHY AND CONSERVATION
Allendorf, F.W. and R.S. Waples. 1996. Conservation genetics of salmonid fishes. Pp. 238-280 In: Conservation
Genetics; case histories from nature (eds. J.C. Avise and J.L. Hamrick). Chapman and Hall, NY.
Ashley, M. V., M. F. Willson, O. R. W. Pergams, D. J. O'Dowd, S. M. Gende, and J. S. Browne. 2003. Evolutionarily
enlightened management. Biological Conservation 111:115–123.
13
PHYLOGEOGRAPHY PAPERS
Avise JC (1995) Mitochondrial DNA polymorphism and a connection between genetics and demography of
relevance to conservation. Cons. Biol. 9:686-690.
Bernatchez, L. 1995. A role for molecular systematics in defining evolutionary significant units in fishes. In: J.L.
Nielsen (ed.). Evolution and the Aquatic Ecosystem: Defining Unique Units in Population Conservation.
American Fisheries Society Symposium 17, American Fisheries Society, Bethesda, Maryland. pp. 114-132.
Baker, C.S. and S.R. Palumbi. 1996. Population structure, molecular systematics, and forensic identification of whales
and dolphins. Pp. 10-49 In: Conservation Genetics; case histories from nature (eds. J.C. Avise and J.L.
Hamrick). Chapman and Hall, NY.
Billington N, P.D.N. Hebert. 1991. Mitochondrial DNA diversity in fishes and its implications for introductions.
Can. J. Fish. Aquat. Sci. 48 (suppl. 1):80-94.
Bininda-Emonds, O. R. P., D. P. Vasquez, and L. L. Manne 2000. The calculus of biodiversity: integrating
phylogeny and conservation. Trends Ecol. Evol. 15:92-94.
Bowen, B.W. 1998. What is wrong with ESUs? The gap between evolutionary theory and conservation principles.
J. Shellfish Research 17:1355-1358.
Bowen, B.W. 1999. Preserving genes, ecosystems, or species? Healing the fractured foundations of conservation
policy. Mol. Ecol. 8:S5-S10.
Bruford, M. W., D. J. Cheesman, R. Coote, H. A. A. Green, S. A. Haines, C. O'Ryan, and T. R. Williams 1996.
Microsatellites and their application to conservation genetics. Pages 278-297 in Molecular genetic
approaches in conservation (T. B. Smith and R. K. Wayne, eds.). Oxford University Press, New York.
Campton, D.E., A.L. Bass, F.A. Chapman, and B.W. Bowen. 2000. Genetic distinction of pallid, shovelnose, and
Alabama sturgeon; emerging species and the U.S. endangered species act. Conservation Genetics 1:17-32.
Carleton, J.T. and J.B. Geller. 1993. Ecological roulette: the global transport of nonindiginous marine organisms.
Science 261:78-82.
Crandall, K.A., O.R.P. Bininda-Emonds, Georgina M. Mace, and R.K. Wayne. 2000. Considering evolutionary
processes in conservation. Trends Ecol. Evol. 15:290-295.
Dimmick, W. W., M. J. Ghedotti, M. J. Grose, A. M. Maglia, D. J. Meinhardt, and D. S. Pennock 1999. The
importance of systematic biology in defining units of conservation. Conserv. Biol. 13:653-660.
Dizon, A.E., C. Lockyer, W.F. Perrin, D.P. DeMaster, and J. Sisson. 1992. Rethinking the stock concept; a
phylogeographic approach. Conserv. Biol. 6:24-36.
Erwin, T.L. 1991. An evolutionary basis for conservation strategies. Science 253: 750-752.
Faith, D.P., C.A.M. Reid, and J. Hunter. 2004. Integrating phylogenetic diversity, complementarity, and endemism for
conservation assessment. Conservation Biology 18:255-261.
Fraser, D.J., and L. Bernatchez. 2001. Adaptive evolutionary conservation: towards a unified concept for deriving
conservation units. Molecular Ecology 10:2741-2752.
Goldstein, P.Z. 1997. Phyloconservation. Cons. Biol. 11:582-583.
Goldstein, P. Z., R. DeSalle, G. Amato, and A. P. Vogler 2000. Conservation genetics at the species boundary.
Conserv. Biol. 14:120-131.
Graves, J.E. 1996. Conservation genetics of fishes in the pelagic marine realm. Pp. 335-368 In: Conservation
Genetics; case histories from nature (eds. J.C. Avise and J.L. Hamrick). Chapman and Hall, NY.
14
PHYLOGEOGRAPHY PAPERS
Karl, S.A. and B.W. Bowen. 1999. Evolutionary significant units versus geopolitical taxonomy: molecular systematics
of an endangered sea turtle (genus Chelonia). Conservation Biology 13:990-999.
Moritz, C. 1994a. Applications of mitochondrial DNA analysis on conservation: a critical review. Mol. Ecol. 3:401411.
Moritz, C. 1994b. Defining evolutionary significant units for conservation. Trends Ecol. Evol. 9:373-375.
Moritz, C. 1995. Use of molecular phylogenies for conservation. Phil. Trans. R. Soc. London B 349:113-118
(reprinted in New Uses for New Phylogenies (eds. P.L. Harvey et al.), Oxford Univ. Press 1996).
Moritz, C. 1999. Conservation units and translocations: strategies for conserving evolutionary processes. Hereditas
130:217-228.
Moritz, C., and D.P. Faith. 1998. Comparative phylogeography and the identification of genetically divergent areas for
conservation. Mol. Ecol. 7: 419-430.
O'Brien, S. J. 1994. A role for molecular genetics in biological conservation. Proc. Nat. Acad. Sci., U.S.A.
91:5748-5755.
Ovenden, J.R. 1990. Mitochondrial DNA and marine stock assessment: a review. Aust. J. Marine Freshwater res.
41:835-853.
Quattro, J.M., T.W. Greig, D.K. Coykendoll, B.W. Bowen, and J.D. Baldwin. 2002. Genetic issues in aquatic
species management: the shortnose sturgeon (Acipenser brevirostrum) in the southeastern United States.
Conservation Genetics 3:155-166.
Rand, D. M. 1996. Neutrality tests of molecular markers and the connection between DNA polymorphism,
demography, and conservation biology. Conserv. Biol. 10:665-671.
Roberts, C.M., et al. 2002. Marine biodiversity, hotspots, and conservation priorities for tropical reefs. Science
295:1280-1284.
Roman, J., and S.R. Palumbi. 2003. Whales before whaling in the North Atlantic. Science 301:508-510.
Storfer, A. 1996. Quantitative genetics: a promising approach for the assessment of genetic diversity in endangered
species. Trends in Ecology & Evolution 11:343-348.
Tringali, M.D., and T.M. Bert. 1998. Risk to genetic effective population size should be an important consideration in
fish stock-enhancement programs. Bull. Mar. Sci. 62:641-659.
Vrijenhoek, R.C. 1996. Conservation genetics of North American Desert Fishes. Pp. 367-397 In: Conservation
Genetics; case histories from nature (eds. J.C. Avise and J.L. Hamrick). Chapman and Hall, NY.
15