Induction of ER stress identifies potential esophageal stem cell markers S.L. Rosekrans,1,2 J. Heijmans,1,2 E.J. Westerlund,1 C. Puylaert, 1 V. Muncan,1 G.R. van den Brink1,2 1 Tytgat Institute for Liver and Intestinal Research, Academic Medical Center, Meibergdreef 69-71 1105BK Amsterdam, the Netherlands 2 Department of Gastroenterology & Hepatology, Academic Medical Center, Amsterdam, the Netherlands The esophageal squamous epithelium is a rapidly renewing tissue. It has recently been shown that the esophageal epithelium is hierarchically organized with long lived stem cells and rapidly proliferating cells that maintain cellular renewal, both being localized in the basal layer. To date, no specific markers have been identified that distinguish stem cells from non stem cell proliferating cells. In the intestinal epithelium, long lived stem cells and transcripts that mark stemness are rapidly depleted upon induction of endoplasmic reticulum (ER) stress (unpublished data, Heijmans, Rosekrans, van den Brink). We hypothesize that esophageal stem cell markers exhibit a similar sensitivity to ER stress. We aim to identify stem cell genes that mark a hierarchically distinct population of cells in the basal layer cells by analysis of a gene signature that is lost upon induction of ER stress. Sensitivity of esophageal precursor cells to ER stress was examined in vivo and in vitro. For proof of principle experiments in vivo, we chemically induced ER stress in mice, by injections with thapsigargin. For in vitro experiments, ER stress was induced in vitro in TE7 and OE21 esophageal squamous cell carcinoma (SCC) cell lines using SubAB, a cytotoxin that induces ER stress by depleting the major ER chaperone GRP78. From in vitro experiments, we next performed gene arrays to identify those transcripts that were significantly down regulated in both cell lines upon induction of ER stress. Next, we localized mRNA of all these genes in wild type mouse esophagus by Dig labeled in situ hybridization. Induction of ER stress in mice resulted in rapid depletion of esophageal precursor cells and accelerated differentiation, thus showing that in analogy to the intestine, esophageal stemness is lost. Using RNA micro-arrays, we identified a gene signature of 47 genes that were lost in both individual cell lines upon induction of ER stress. Of these genes, we found 29 genes to be restricted to the basal layer of the mouse esophagus. Out of these 29, nine genes show expression in only a small proportion of the basal cells, potentially marking stem cells. Conclusion: ER stress depletes esophageal precursor cells. Our in vitro screen combined with in situ hybridization identified nine genes that are specifically expressed in a subset of proliferating genes, thereby potentially marking esophageal stem cells.