CMD PUBLICATIONS LIST
2009
Appels R. 2009. Diversity of genome research at the 2009 plant and animal genome
conference. Functional & Integrative Genomics 9(1): 1-6
Benbouza H, Lognay G, Scheffler J, Baudoin JP, Mergeai G. 2009. Expression of the
"glanded-plant and glandless-seed" trait of Australian diploid cottons in different
genetic backgrounds. Euphytica 165(2): 211-221
Boopathi NM, Ravikesavan R. 2009. Emerging trends in enhancement of cotton
fiberproductivity and quality using functional genomicstools. Biotechnology and
Molecular Biology Reviews 4(1): 011-028
Chaudhary B, Flagel LE, Stupar RM, Udall JA, Verma N, Springer NM, Wendel J. 2009.
Reciprocal silencing, transcriptional bias and functional divergence of homoeologs
in polyploid cotton (Gossypium). The Genetics Society of America DOI:
10.1534/genetics.109.102608
Chen D, Ding Y, Guo W, Zhang T. 2009. Molecular mapping of genic male-sterile
genes ms15, ms5 and ms6 in tetraploid cotton. Plant Breeding DOI: 10.1111/j.14390523.2008.01562.x
Flagel LE, Chen L, Chaudhary B, Wendel JF. 2009. Coordinated and fine-scale control
of homoeologous gene expression in allotetraploid cotton. Journal of Heredity DOI:
10.1093/jhered/esp003
Gosal SS, Wani SH, Kang MS. 2009. Biotechnology and drought tolerance. Journal of
Crop Improvement 23(1): 19-54
Gupta PK, Xu Y. 2009. Genomics of major crops and model plant species.
International Journal of Plant Genomics DOI: 10.1155/2008/171928
Gutierrez OA, Stelly DM, Saha S, Jenkins JN, McCarty Jr JC, Raska DA, Scheffler BE.
2009. Integrative placement and orientation of non-redundant SSR loci in cotton
linkage groups by deficiency analysis. Molecular Breeding DOI: 10.1007/s11032-0099266-y.
Hu Y, Guo W-Z, Zhang T-Z. 2009. Construction of a bacterial artificial chromosome
library of TM-1, a standard line for genetics and genomics in Upland cotton. Journal
of Integrative Plant Biology 51(1): 107-112
Khan AI, Fu Y-B, Khan IA. 2009. Genetic diversity of Pakistani cotton cultivars as
revealed by simple sequence repeat markers. International Journal of the Faculty of
Agriculture and Biology 4(1): 21-30
Lin Z, Zhang Y, Zhang X, Guo X. 2009. A high-density integrative linkage map for
Gossypium hirsutum. Euphytica 166(1): 35-45
Qian N, Zhang X-W, Guo W-Z, Zhang T-Z. 2009. Fine mapping of open-bud duplicate
genes in homoelogous chromosomes of tetraploid cotton. Euphytica 165: 325-331
Song L, Guo W, Zhang T. 2009. Interaction of novel Dobzhansky-Muller type genes
for the induction of hybrid lethality between Gossypium hirsutum and G.
barbadense cv. Coastland R4-4. Theoretical and Applied Genetics 119(1): 33-41
Sun D-L, Sun J-L, Jia Y-H, Ma Z-Y, Du X-M. 2009. Genetic diversity of colored
cotton analyzed by simple sequence repeat markers. International Journal of Plant
Sciences 170(1): 76-82
Taliercio EW, Romano G, Scheffler J, Ayre BG. 2009. Expression of genes associated
with carbohydrate metabolism in cotton stems and roots. Plant Biology DOI:
10.1186/1471-2229-9-11
Wu J, Gutierrez OA, Jenkins JN, McCarty JC, Zhu J. 2009. Quantitative analysis and
QTL mapping for agronomic and fiber traits in an RI population of upland cotton.
Euphytica 165: 231-245
Yin JM, Chen XS, Xiao SH, Xu NY, Die JC, Liu JG, Wu QJ. 2009. Molecular mapping
of a new red mutant gene (Rs) in upland cotton. Plant Breeding DOI: 10.1111/j.14390523.2008.01590.x
Zeng L, Meredith WR Jr, Gutiirrez OA, Boykin DL. 2009. Identification of associations
between SSR markers and fiber traits in an exotic germplasm derived from multiple
crosses among Gossypium tetraploid species. Theoretical and Applied Genetics 119(1):
93-103
Zhao L, Cai CP, Zhang TZ, Guo WZ. 2009. Fine mapping of the red plant gene R1 in
upland cotton. Chinese Science Bulletin 54(9): 1529-1533
Zhu HY, Zhang TZ, Yang LM, Guo WZ. 2009. EST-SSR sequences revealed the
relationship of D-genome in diploid and tetraploid species in Gossypium. Plant
Science 176(3): 397-405
2008
Abdurakhmonov IY, Kohel RJ, Yu JZ, Pepper AE, Abdullaev AA, Kushanov FN,
Salakhutdinov IB, Buriev ZT, Saha S, Scheffler BE, Jenkins JN, Abdukarimov A. 2008.
Molecular diversity and association mapping of fiber quality traits in exotic
G.hirsutum L.germplasm. Genomics DOI:10.1016/j.ygeno.2008.07.013.
Abdurakhmonov IY, Saha S, Jenkins JN, Buriev ZT, Shermatov SE, Scheffler BE,
Pepper AE, Yu JZ, Kohel RJ, Abdukarimov A. 2008. Linkage disequilibrium based
association mapping of fiber quality traits in G. hirsutum L. variety germplasm.
Genetica DOI 10.1007/s10709-008-9337-8
Ali MA, Seyal MT, Awan SI, Niaz S, Ali S, Abbas A. 2008. Hybrid authentication in
upland cotton through RAPD analysis. Australian Journal of Crop Science 2(3): 141149
An C, Saha S, Jenkins JN, Ma D-P, Scheffler BE, Kohel RJ, Yu JZ, Stelly DM. 2008.
Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification,
phylogenomic characterization, chromosome localization, and linkage mapping.
Theoretical and Applied Genetics DOI 10.1007/s00122-008-0732-4
Burger JC, Chapman MA, Burke JM. 2008. Molecular insights into the evolution of
crop plants. American Journal of Botany 95(2): 113-122
Guan B, Wang K, Zhou B-L, Guo W-Z, Zhang T-Z. 2008. Establishment of a multicolor genomic in situ hybridization technique to simultaneously discriminate the
three interspecific hybrid genomes in Gossypium. Journal of Integrative Plant Biology
50(3): 345-351
Guo Y, McCarty JC, Jenkins JN, An C, Saha S. 2008. Genetic detection of node of first
fruiting branch in crosses of a cultivar with two exotic accessions of upland cotton.
Euphytica DOI 10.1007/s10681-008-9809-z
Han L, Xu H, Zhu J, Lou X. 2008. Analysis of genetic effects of nuclearcytoplasmic
interaction on quantitative traits: Genetic models for seed traits of plants. Theor
Appl Genet 116:769-776.
He DH, Lin ZX, Zhang XL, Zhang YX, Li W, Nie YC, Guo XP. 2008. Dissection of
genetic variance of fibre quality in advanced generations from an interspecific cross
of Gossypium hirsutum and G. barbadense. Plant Breeding 127(3): 286-294
Hovav R, Chaudhary B, Udall JA, Flagel L, Wendel JF. 2008 Parallel domestication,
convergent evolution and duplicated gene recruitment in allopolyploid cotton.
Genetics Society of America DOI: 10.1534/genetics.108.089656
Hovav R, Udall JA, Chaudhary B, Hovav E, Flagel L, Hu G, Wendel JF. 2008. The
Evolution of Spinnable Cotton Fiber Entailed Prolonged Development and a Novel
Metabolism. PLoS Genetics 4(2): e25
Hsu C-Y, An C, Saha S, Ma D-P, Jenkins JN, Scheffler B, and Stelly DM. 2008.
Molecular and SNP characterization of two genome specific transcription factor
genes GhMyb8 and GhMyb10 in cotton species. Euphytica 159(1-2): 259-273
Kantartzi SK, Stewart JMcD. 2008. Association analysis of fibre traits in Gossypium
arboreum accessions. Plant Breeding 127(2): 173-179
Kantartzi SK, Ulloa M, Sacks E, Stewart JM. 2008 Assessing genetic diversity in
Gossypium arboreum L. cultivars using genomic and EST-derived microsatellites.
Genetica DOI 10.1007/s10709-008-9327-x
Langon J, Pichaut JP, Djaboutou M, Lewicki-Dhainaut S, Viot C, Lacape JM. 2008. Use
of molecular markers in participatory plant breeding: assessing the genetic
variability in cotton populations bred by farmers. Annals of Applied Biology 152(1):
113-119
Ma X-X, Zhou B-L, L| Y-H, Guo W-Z, Zhang T-Z. 2008. Simple sequence repeat
genetic linkage maps of A-genome diploid cotton (Gossypium arboreum). Journal of
Integrative Plant Biology 50(4): 491-502
Preetha S, Raveendren TS. 2008. Molecular marker technology in cotton.
Biotechnology and Molecular Biology Reviews 3(2): 32-45
Qin H, Guo W, Zhang Y-M, Zhang T. 2008. QTL mapping of yield and fiber traits
based on a four-way cross population in Gossypium hirsutum L. Theor Appl Genet
117:883-894
Tokatlidis IS, Tsikrikoni C, Tsialtas JT, Lithourgidis AS, Bebeli PJ. 2008. Variability
within cotton cultivars for yield, fibre quality and physiological traits. The Journal of
Agricultural Science doi:10.1017/S0021859608007867
Wang C, Ulloa M, Roberts PA. 2008. A transgressive segregation factor (RKN2) in
Gossypium barbadense for nematode resistance clusters with gene rkn1 in G.
hirsutum. Molecular Genetics and Genomics 279(1): 41-52
Wang H-M, Lin Z-X, Zhang X-L, Chen W, Guo X-P, Nie Y-C, Li Y-H. 2008. Mapping
and quantitative trait loci analysis of verticillium wilt resistance genes in cotton.
Journal of Integrative Plant Biology 50(2): 174-182
Wu Z, Soliman KM, Bolton JJ, Saha S, Jenkins JN. 2008 Identification of differentially
expressed genes associated with cotton fiber development in a chromosomal
substitution line (CS-B22sh). Functional and Integrative Genomics 8: 165-174
Xu Z, Kohel RJ, Song G, Cho J, Alabady M, Yu J, Koo P, Chu J, Yu S,Wilkins TA, Zhu
Y, Yu JZ. 2008. Gene-rich islands for fiber development in the cotton genome..
Genomics. 92(3):173-83.
Xu Z, Kohel RJ, Song G, Cho J, Yu J, Yu S, Tomkins J, Yu JZ. 2008. An integrated
genetic and physical map of homoeologous chromosomes 12 and 26 in Upland
cotton (G. hirsutum L.). BMC Genomics 9: 108
Yang C, Guo W, Li G, Gao F, Lin S, Zhang T. 2008. QTLs mapping for Verticillium
wilt resistance at seedling and maturity stages in Gossypium barbadense L. Plant
Science 174(3): 290-298
Zhang H-B, Li Y, Wang B, Chee PW. 2008. Recent advances in cotton genomics.
International Journal of Plant Genomics DOI: 10.1155/2008/742304
2007
Abdurakhmonov IY, Buriev ZT, Saha S, Pepper AE, Musaev JA, Almatov A, Shermatov
SE, Kushanov FN, Mavlonov GT, Reddy UK, Yu JZ, Jenkins JN, Kohel RJ,
Abdukarimov A. 2007. Microsatellite markers associated with lint percentage trait in
cotton, Gossypium hirsutum. Euphytica 156: 141-156
Abdurakhmonov IY, Kushanov FN, Djaniqulov F, Buriev ZT, Pepper AE, Fayzieva N,
Mavlonov GT, Saha S, Jenkins JN, Abdukarimov A. 2007. The role of induced
mutation in conversion of photoperiod dependence in cotton. Journal of Heredity 98:
258 – 266
Adawy SA. 2007. An evaluation of the utility of simple sequence repeat loci (SSR),
expressed sequence tags (ESTs) and expressed sequence tag microsatellites (ESTSSR) as molecular markers in cotton. Journal of Applied Sciences Research 3(11):
1581-1588
Ahmad S, Zhang T, Islam N-U, Shaheen T, Rahman M-U. 2007. IDENTIFYING
GENETIC VARIATION IN GOSSYPIUM BASED ON SINGLE NUCLEOTIDE
POLYMORPHISM. Pak. J. Bot 39(4):1245-1250
Chen ZJ, Scheffler BE, Dennis E, Triplett BA, Zhang T, Guo W, Chen X, Stelly DM,
Rabinowicz PD, Town CD, Arioli T, Brubaker C, Cantrell RG, Lacape J-M, Ulloa M,
Chee P, Gingle AR, Haigler CH, Percy R, Saha S, Wilkins T, Wright RJ, Van Deynze A,
Zhu Y, Yu S, Abdurakhmonov I, Katageri I, Kumar PA, Rahman M, Zafar Y, Yu JZ,
Kohel RJ, Wendel JF, Paterson AH. 2007. Toward sequencing cotton (Gossypium)
genomes. Plant Physiology 145: 1303-1310
Dong C, Ding Y, Guo W, Zhang T. 2007. Fine mapping of the dominant glandless
Gene Gl 2 e in Sea-island cotton (Gossypium barbadense L.). Chinese Science
Bulletin 52(22): 3105-3109
Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B, Zhang
T. 2007. A microsatellite-based, gene-rich linkage map reveals genome structure,
function, and evolution in Gossypium. Genetics 176: 527-541
Guo WZ, Sang ZQ, Zhou BL, Zhang TZ. 2007. Genetic relationships of D-genome
species based on two types of EST-SSR markers derived from G. arboreum and G.
raimondii in Gossypium. Plant Science 172(4): 808-814
Guo Y, Saha S, Yu JZ, Jenkins JN, Kohel RJ, Scheffler BE, Stelly DM. 2007. BACderived SSR markers chromosome locations in cotton. Euphytica DOI:
10.1007/s10681-007-9585-1
He DH, Lin ZX, Zhang XL, Nie YC, Guo XP, Zhang YX, Li W. 2007. QTL mapping
for economic traits based on a dense genetic map of cotton with PCR-based markers
using the interspecific cross of Gossypium hirsutum W Gossypium barbadense.
Euphytica 153(1-2): 181-197
Hoffman SM, Yu JZ, Grum DS, Xiao J, Kohel RJ, Pepper AE. 2007. Identification of
700 new microsatellite loci from cotton (G. hirsutum L.). Journal of Cotton Science
11(4): 208-241
Hussein EHA, Osman MHA, Hussein MH, Adawy SS. 2007. Molecular
characterization of cotton genotypes using PCR-based markers. Journal of Applied
Sciences Research 3(10): 1156-1169
Kebede H, Burow G, Dani RG, Allen RD. 2007. A-genome cotton as a source of
genetic variability for Upland cotton (Gossypium hirsutum). Genetic Resources and
Crop Evolution 54(4): 885-895
Konan ON, D'Hont A, Baudoin JP, Mergeai G. 2007. Cytogenetics of a new trispecies
hybrid in cotton: [(Gossypium hirsutum L. x G. thurberi Tod.)2 x G. longicalyx
Hutch. & Lee]. Plant Breeding 126(2): 176-181
Lacape JM, Dessauw D, Rajab M, Noyer JL, Hau B. 2007. Microsatellite diversity in
tetraploid Gossypium germplasm: assembling a highly informative genotyping set of
cotton SSRs. Molecular Breeding 19(1): 45-58
Li W, Lin Z, Zhang X. 2007. A novel segregation distortion in intraspecific
population of Asian cotton (Gossypium arboretum L.) detected by molecular
markers. Journal of Genetics and Genomics 34(7): 634-640
Rong J, Feltus FA, Waghmare VN, Pierce GJ, Chee PW, Draye X, Saranga Y, Wright
RJ, Wilkins TA, May OL, Smith CW, Gannaway JR, Wendel JF, Paterson AH. 2007.
Meta-analysis of polyploid cotton QTL shows unequal contributions of subgenomes
to a complex network of genes and gene clusters implicated in lint fiber
development. Genetics 176(4): 2577-88
Shen X, Guo W, Lu Q, Zhu X, Yuan Y, Zhang T. 2007. Genetic mapping of
quantitative trait loci for fiber quality and yield trait by RIL approach in Upland
cotton. Euphytica 155(3): 371-380
Song X-L, Zhang T-Z. 2007. Identification of quantitative trait loci controlling seed
physical and nutrient traits in cotton. Seed Science Research 17: 243-251
Ulloa M, Brubaker C, Chee P. 2007. Cotton. In: Genome Mapping & Molecular
Breeding Vol 6: Technical Crops. P. 1-49. Springer, Heidelberg, Berlin, New York,
Tokyo. ISBN 978-3-540-34537-4
Wan Q, Zhang Z, Hu M, Chen L, Liu D, Chen X, Wang W, Zheng J. 2007. T1 locus in
cotton is the candidate gene affecting lint percentage, fiber quality and spiny
bollworm ( Earias spp.) resistance. Euphytica 158: 241-247
Wang B, Guo W, Zhu X, Wu Y, Huang N, Zhang T. 2007. QTL mapping of yield and
yield components for elite hybrid derived-RILs in upland cotton. Journal of Genetics
and Genomics 34(1):35-45
Wang F, Stewart JM, Zhang J. 2007. Molecular markers linked to the Rf2 fertility
restorer gene in cotton. Genome 50(9): 818-24
Wang K, Guo W, Zhang T. 2007. Detection and mapping of homologous and
homoeologous segments in homoeologous groups of allotetraploid cotton by BACFISH. BMC Genomics 8: 178
Wang K, Guo W, Zhang T. 2007. Development of one set of chromosome-specific
microsatellite-containing BACs and their physical mapping in Gossypium hirsutum
L. Theoretical and Applied Genetics 115: 675-682
Wang X, Ma J, Yang S, Zhang G, Ma Z. 2007. Assessment of genetic diversity among
Chinese upland cottons with Fusarium and/or Verticillium wilts resistance by AFLP
and SSR markers. Frontiers of Agriculture in China 1(2): 129-135
Wu Y-X, Daud MK, Chen L, Zhu S-J. 2007. Phylogenetic diversity and relationship
among Gossypium germplasm using SSRs markers. Plant Systematics and Evolution
DOI: 10.1007/s00606-007-0565-7
Yang X, Zhang X, Jin S, Fu L, Wang L. 2007. Production and characterization of
asymmetric hybrids between upland cotton Coker 201 (Gossypium hirsutum) and
wild cotton (G. klozschianum Anderss). Plant Cell, Tissue and Organ Culture 89: 225235
Yu J, Yu S, Lu C, Wang W, Fan S, Song M, Lin Z, Zhang X, Zhang J. 2007. Highdensity linkage map of cultivated allotetraploid cotton based on SSR, TRAP, SRAP
and AFLP markers. Journal of Integrative Plant Biology 49(5): 716-724
Zhang XQ, Wang XD, Jiang PD, Hua SJ, Zhang HP, Dutt Y. 2007. Relationship
between molecular marker heterozygosity and hybrid performance in intra- and
interspecific hybrids of cotton. Plant Breeding 126(4): 385-391
Zhang YX, Lin ZX, Li W, Tu LL, Nie YC, Zhang XL. 2007. Studies of new EST-SSRs
derived from Gossypium barbadense. Chinese Science Bulletin 52(18): 2522-2531
2006
Bertini C, Schuster I, Sediyama T, Barros E, Moreira M. 2006. Characterization and
genetic diversity analysis of cotton cultivars using microsatellites. Genetics and
Molecular Biology 29(2): 321-329
Blenda A, Scheffler J, Scheffler B, Palmer M, Lacape J-M, Yu JZ, Jesudurai C, Jung S,
Muthukumar S, Yellambalase P, Ficklin S, Staton M, Eshelman R, Ulloa M, Saha S, Burr
B, Liu S, Zhang T, Fang D, Pepper A, Kumpatla S, Jacobs J, Tomkins J, Cantrell R, Main
D. 2006. CMD: A Cotton Microsatellite Database Resource for Gossypium
Genomics. BMC Genomics 7: 132
Changbiao W, Wangzhen G, Caiping C, Tianzhen Z. 2006. Characterization,
development and exploitation of EST- derived microsatellites in Gossypium
raimondii Ulbrich. Chinese Science Bulletin 51(5): 557-561
Frelichowski JE Jr, Palmer MB, Main D, Tomkins JP, Cantrell RG, Stelly DM, Yu J,
Kohel RJ, Ulloa M. 2006. Cotton genome mapping with new microsatellites from
Acala 'Maxxa' BAC-ends. Molecular Genetics and Genomics 275(5): 479-491
Guo W, Wang W, Zhou B, Zhang T. 2006. Cross-species transferability of G.
arboreum-derived EST-SSRs in the diploid species of Gossypium. Theoretical and
Applied Genetics 112(8): 1573-1581
Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T. 2006. Characteristics,
development and mapping of Gossypium hirsutum derived EST-SSRs in
allotetraploid cotton. Theoretical and Applied Genetics 112(3): 430-439
Jenkins JN, Wu J, McCarty JC, Saha S, Gutierrez O, Hayes R, Stelly DM. 2006. Genetic
effects of thirteen Gossypium barbadense L. chromosome substitution lines in
topcrosses with upland cotton cultivars: I. Yield and yield components. Crop Science
46(3): 1169-1178
Kumar P, Paterson AH, Chee PW. 2006. Predicting intron sites by aligning cotton
ESTs with Arabidopsis genomic DNA. Journal of Cotton Science 10: 29-38
Liu D, Guo X, Lin Z, Nie Y, Zhang X. 2006. Genetic diversity of Asian cotton
(Gossypium arboreum L.) in China evaluated by microsatellite analysis. Genetic
Resources and Crop Evolution 53(6): 1145-1152
Pang C, Du X, Ma Z. 2006. Evaluation of the introgressed lines and screening for
elite germplasm in Gossypium. Chinese Science Bulletin 51(3): 304-312
Percy RG, Cantrell RG, Zhang J. 2006. Genetic variation for agronomic and fiber
properties in an introgressed recombinant inbred population of cotton. Crop Science
46(3): 1311-1317
Shen X, Van Becelaere G, 3, Kumar P, Davis RF, May OL, Chee P. 2006. QTL
mapping for resistance to root-knot nematodes in the M-120 RNR Upland cotton
line (Gossypium hirsutum L.) of the Auburn 623 RNR source. Theoretical and
Applied Genetics 113(8): 1539-1549
Shen X, Zhang T, Guo W, Zhu X, Zhang X. 2006. Mapping fiber and yield QTLs with
main, epistatic, and QTL x environment interaction effects in recombinant inbred
lines of upland cotton. Crop Science 46: 61-66
Sun Y, Nie Y, Guo X, Huang C, Zhang X. 2006. Somatic hybrids between Gossypium
hirsutum L. (4W) and G. davidsonii Kellog (2W) produced by protoplast fusion.
Euphytica 151(3): 393-400
Taliercio E, Allen RD, Essenberg M, Klueva N, Henry Nguyen, Patil MA, Payton P,
Millena ACM, Phillips AL, Pierce ML, Scheffler B, Turley R, Wang J, Zhang D,
Scheffler J. 2006. Analysis of ESTs from multiple Gossypium hirsutum tissues and
identification of SSRs. Genome 49: 306-319
Wang B, Guo W, Zhu X, Wu Y, Huang N, Zhang T. 2006. QTL mapping of fiber
quality in an elite hybrid derived-RIL population of upland cotton. Euphytica
152(3): 367-378
Wang C, Ulloa M, Roberts PA. 2006. Identification and mapping of microsatellite
markers linked to a root-knot nematode resistance gene (rkn1) in Acala NemX
cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics 112(4): 770-777
Wang K, Song X, Han Z, Guo W, Yu JZ, Sun J, Pan J, Kohel RJ, Zhang T. 2006.
Complete assignment of the chromosomes of Gossypium hirsutum L. by
translocation and fluorescence in situ hybridization mapping. Theoretical and
Applied Genetics 113(1): 73-80
Yin J, Guo W, Yang L, Liu L, Zhang T. 2006. Physical mapping of the Rf 1 fertilityrestoring gene to a 100 kb region in cotton. Theoretical and Applied Genetics 112:
1318-1325
Yin JM, Guo WZ, Zhang TZ. 2006. Construction and identification of bacterial
artificial chromosome library for 0-613-2R in upland cotton. Journal of Integrative
Plant Biology 48 (2): 219-222
Ynturi P, Jenkins JN, McCarty JC Jr, Gutierrez OA, Saha S. 2006. Association of rootknot nematode resistance genes with simple sequence repeat. Crop Science 46: 26702674
2005
Abdurakhmonov IY, Abdullaev AA, Saha S, Buriev ZT, Arslanov D, Kuryazov Z,
Mavlonov GT, Rizaeva SM, Reddy UK, Jenkins JN, Abdullaev A, Abdukarimov A.
2005. Simple sequence repeat marker associated with a natural leaf defoliation trait
in tetraploid cotton. Journal of Heredity 96(6): 644-653
Bolek Y, El-Zik KM, Pepper AE, Bell AA, Magill CW, Thaxton PM, Reddy OU. 2005.
Mapping of verticillium wilt resistance genes in cotton. Plant Science 168: 1581-1590
Dongre A, Parkhi V. 2005. Identification of cotton hybrid through the combination of
PCR based RAPD, ISSR and microsatellite markers. Journal of Plant Biochemistry
and Biotechnology 14(1): 53-55
Feng C-D, Stewart JMcD, Zhang J-F. 2005. STS markers linked to the Rf1 fertility
restorer gene of cotton. Theoretical and Applied Genetics 110: 237-243
Guo W-Z, Fang D, Yu W-D, Zhang T-Z. 2005. Sequence divergence of microsatellites
and phylogeny analysis in tetraploid cotton species and their putative diploid
ancestors. Journal of Integrative Plant Biology 47(12): 1418-1430
He D-H, Zhong-Xu Lin, Zhang X-L, Nie Y-C, Guo X-P, Feng C-D, Stewart JMcD. 2005.
Mapping QTLs of traits contributing to yield and analysis of genetic effects in
tetraploid cotton. Euphytica 144: 141-149
Kumpatla SP, Mukhopadhyay S. 2005. Mining and survey of simple sequence repeats
in expressed sequence tags of dicotyledonous species. Genome 48(6): 985-998
Lacape J-M, Nguyen T-B, Courtois B, Belot J-L, Giband M, Gourlot J-P, Gawryziak G,
Roques S, Hau B. 2005. QTL analysis of cotton fiber quality using multiple
Gossypium hirsutum x Gossypium barbadense backcross generations. Crop Science
45: 123-140
Lacape J-M, Nguyen TB. 2005. Mapping quantitative trait loci associated with leaf
and stem pubescence in cotton. Journal of Heredity 96(4): 441-444
Lin Z, He D, Zhang X, Nie Y, Guo X, Feng C, Stewart JMcD. 2005. Linkage map
construction and mapping QTL for cotton fibre quality using SRAP, SSR and
RAPD. Plant Breeding 124: 180-187
Park Y-H, Alabady MS, Ulloa M, Sickler B, Wilkins TA, Yu J, Stelly DM, Kohel RJ, ElShihy OM, Cantrell RG. 2005. Genetic mapping of new cotton fiber loci using ESTderived microsatellites in an interspecific recombinant inbred line cotton
population. Molecular Genetics and Genomics 274: 428-441
Rungis D, Llewellyn D, Dennis ES, Lyon BR. 2005. Simple sequence repeat (SSR)
markers reveal low levels of polymorphism between cotton (Gossypium hirsutum
L.) cultivars. Australian Journal of Agricultural Research 56(3): 301-307
Shen X, Guo W, Zhu X, Yuan Y, Yu JZ, Kohel RJ, Zhang T. 2005. Molecular mapping
of QTLs for fiber qualities in three diverse lines in Upland cotton using SSR
markers. Molecular Breeding 15(2): 169-181
Song X, Wang K, Guo W, Zhang J, Zhang T, Scoles GJ. 2005. A comparison of genetic
maps constructed from haploid and BC1 mapping populations from the same
crossing between Gossypium hirsutum L. and Gossypium barbadense L. Genome
48(3): 378-390
Song X-L, Guo W-Z, Han Z-G, Zhang T-Z. 2005. Quantitative trait loci mapping of
leaf morphological traits and chlorophyll content in cultivated tetraploid cotton.
Journal of Integrative Plant Biology 47(11): 1382-1390
Xiong-Ming D, Zhao-EP, Jun-Ling S, Zhong-Li Z, Bao-Yin P. 2005. Characterization
of trait variations in progenies of Gossypium hirsutum transformed with the
genomic DNA of Gossypium barbadense. Chinese Journal of Agricultural
Biotechnology 2(1): 39-45
Zhang J, Lu Y, Cantrell RG, Hughs E. 2005. Molecular marker diversity and field
performance in commercial cotton cultivars evaluated in the Southwestern USA.
Crop Science 45: 1483-1490
Zhang JF, Lu Y, Adragna H, Hughs E. 2005. Genetic improvement of New Mexico
Acala cotton germplasm and their genetic diversity. Crop Science 45: 2363-2373
Zhang Z-S, Xiao Y-H, Luo M, Li X-B, Luo X-Y, Hou L, Li D-M, Pei Y. 2005.
Construction of a genetic linkage map and QTL analysis of fiber-related traits in
upland cotton (Gossypium hirsutum L.). Euphytica 144(1): 91-99
Chee PW, Rong JK, Williams-Coplin D, Schulze SR, Paterson AH. 2004. EST derived
PCR-based markers for functional gene homologues in cotton. Genome 47: 449-462
2004
Gao W, Chen ZJ, Yu JZ, Raska D, Kohel RJ, Womack JE, Stelly DM. 2004. Wide-cross
whole-genome radiation hybrid mapping of cotton (Gossypium hirsutum L.).
Genetics 167(3): 1317-29
Han ZG, Guo WZ, Song XL, Zhang TZ. 2004. Genetic mapping of EST-derived
microsatellites from the diploid Gossypium arboreum in allotetraploid cotton.
Molecular Genetics and Genomics 272(3): 308-327
Kumpatla SP, Manley MK, Horne EC, Gupta M, Thompson SA. 2004. An improved
enrichment procedure to develop multiple repeat classes of cotton microsatellite
markers. Plant Molecular Biology Reporter 22: 85-86
Mei M, Syed NH, Gao W, Thaxton PM, Smith CW, Stelly DM, Chen ZJ. 2004. Genetic
mapping and QTL analysis of fiber-related traits in cotton (Gossypium). Theoretical
and Applied Genetics 108: 280-291
Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape J-M. 2004. Wide coverage of
the tetraploid cotton genome using newly developed microsatellite markers.
Theoretical and Applied Genetics 109: 167-175
Qureshi SN, Saha S, Kantety RV, Jenkins JN. 2004. EST-SSR: A new class of genetic
markers in cotton. Journal of Cotton Science 8: 112-123
Qureshi SN, Saha S, Kantety RV, Jenkins JN. 2004. MOLECULAR BIOLOGY AND
PHYSIOLOGY. EST-SSR: A New Class of Genetic Markers in Cotton. The Journal
of Cotton Science 8: 112-123
Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X,
Garza JJ, Marler BS, Park C, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder
NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L,
Paterson AH. 2004. A 3347-locus genetic recombination map of sequence-tagged sites
reveals features of genome organization, transmission and evolution of cotton
(Gossypium). Genetics 166: 389-417
Ruiz M, Rouard M, Raboin LM, Lartaud M, Lagoda P, Courtois B. 2004. TropGENEDB, a multi-tropical crop information system. Nucleic Acids Research 32: D364-367
2003
Ahoton L, Lacape J-M, Baudoin LP, Mergeai G. 2003. Introduction of Australian
diploid cotton genetic variation into upland cotton. Crop Science 43: 1999-2005
Bezawada C, Saha S, Jenkins JN, Creech RG, McCarty JC. 2003. SSR marker(s)
associated with root knot nematode resistance gene(s) in cotton. Journal of Cotton
Science 7: 179-184
Guo W, Zhang T, Shen X, Yu JZ, Kohel RJ. 2003. Development of SCAR marker
linked to a major QTL for high fiber strength and its usage in molecular-marker
assisted selection in upland cotton. Crop Science 43(6): 2252-2257
Lacape J-M, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B,
Hau B. 2003. A combined RFLP-SSR-AFLP map of tetraploid cotton based on a
Gossypium hirsutum x Gossypium barbadense backcross population. Genome 46(4):
612-26
Liu L, Guo W, Zhu X, Zhang T. 2003. Inheritance and fine mapping of fertility
restoration for cytoplasmic male sterility in Gossypium hirsutum L. Theoretical and
Applied Genetics 106: 461-469
Nekrutenko A, Baker RJ. 2003. Subgenome-specific markers in allopolyploid cotton
Gossypium hirsutum: implications for evolutionary analysis of polyploids. Gene 306:
99-103
Saha S, Karaca M, Jenkins JN, Zipf AE, Reddy OUK, Kantety RV. 2003. Simple
sequence repeats as useful resources to study transcribed genes of cotton. Euphytica
130(3): 355-364
Zhang TZ, Yuan Y, Yu J, Guo W, Kohel RJ. 2003. Molecular tagging of a major QTL
for fiber strength in Upland cotton and its marker-assisted selection. Theoretical and
Applied Genetics 106: 262-268
2002
Gutierrez OA, Basu S, Saha S, Jenkins JN, Shoemaker DB, Cheatham CL, McCarty JC.
2002. Genetic distance among selected cotton genotypes and its relationship with F2
performance. Crop Science 42: 1841-1847
Karaca M, Saha S, Jenkins JN, Zipf A, Kohel R, Stelly DM. 2002. Simple sequence
repeat (SSR) markers linked to the Ligon lintless (Li(1)) mutant in cotton. Journal of
Heredity 93(3): 221-4
Yu J, Kohel RJ, Dong RJ. 2002. Development of integrative SSR markers from TM-1
BACs. Proceedings of Beltwide Cotton Conferences Cdrom
Zhang J, Guo W, Zhang T. 2002. Molecular linkage map of allotetraploid cotton
(Gossypium hirsutum L. x Gossypium barbadense L.) with a haploid population.
Theoretical and Applied Genetics 105(8): 1166-1174
2001
Liu B, Wendel JF. 2001. Intersimple sequence repeat (ISSR) polymorphisms as a
genetic marker system in cotton. Molecular Ecology Notes 1: 205-208
Reddy OUK, Pepper AE, Abdurakhmonov I, Saha S, Jenkins JN, Brooks T, Bolek Y, ElZik K. 2001. New dinucleotide and trinucleotide microsatellite marker resources for
cotton genome research. Journal of Cotton Science 5: 103-113
44 Tomkins JP, Peterson DG, Yang TJ, Main D, Wilkins TA, Paterson AH, Wing RA.
2001. Development of genomic resources for cotton (Gossypium hirsutum L.): BAC
library construction, preliminary STC analysis, and identification of clones
associated with fiber development. Molecular Breeding 8(3): 255-261
2000
Liu S, Cantrell RG, McCarty JC, Stewart JMcD. 2000. Simple sequence repeat-based
assessment of genetic diversity in cotton race stock accessions. Crop Science 40:
1459-1469
Liu S, Saha S, Stelly D, Burr B, Cantrell RG. 2000. Chromosomal assignment of
microsatellite loci in cotton. Journal of Heredity 91(4): 326-32
1998
Connell JP, Pammi S, Iqbal MJ, Huizinga T, Reddy AS. 1998. A high throughput
procedure for capturing microsatellites from complex plant genomes. Plant
Molecular Biology Reporter 16: 341-349
Zhao XP, Ji YF, Ding XL, Stelly DM, Paterson AH. 1998. Macromolecular
organization and genetic mapping of a rapidly evolving chromosome-specific
tandem repeat family (B77) in cotton (Gossypium). Plant Molecular Biology 38(6):
1031-1042