Bacteria and Viruses I. Bacteria A. Classifying Prokaryotes 1. Microscopic life covers nearly every square centimeter of Earth. 2. The smallest and most common microorganisms are prokaryotes—unicellular organisms that lack a nucleus. 3. Biologists have divided prokaryotes into two very different groups: the eubacteria and the archaebacteria. a) Eubacteria (1) The larger of the two kingdoms of prokaryotes (2) Includes a wide range of organisms with different lifestyles They can live in freshwater, saltwater, on land, and within the human body (3) They are usually surrounded by a cell wall that protects the cell from injury and determines its shape. (4) (5) b) The cell walls contain peptidoglycan, which is a carbohydrate Archaebacteria Archaebacteria lack the peptidoglycan of eubacteria and also have different membrane lipids. (1) The DNA sequence of key archaebacterial genes are more like those of eukaryotes than those of eubacteria. (2) Based on this and other data, scientists reason that archaebacteria may by the ancestors of eukaryotes. (3) (4) Many live in very harsh environments. (a) Oxygen-free environments, such as the thick mud and the digestive tracts of animals (b) Others in extremely salty environments, like the Great Salt Lake in Utah (c) Or in hot springs where the temperatures approach the boiling point of water B. Identifying Prokaryotes 1. Prokaryotes are identified by characteristics such as shape, the chemical nature of their cell walls, the way they move, and the way they obtain energy. a) b) Shapes (1) Rod-shaped—bacilli (2) Spherical—cocci (3) Spiral and corkscrew-shaped—spirilla Cell Walls (1) Two different types of cell walls are found in eukacteria. (2) A method called Gram staining is used to tell them apart. (a) Gram-positive with thick peptidoglycan walls (b) Gram-negative with much thinner cell walls. c) Movement (1) Some prokaryotes do not move at all (2) Others are propelled by flagella, whiplike structure (3) Others lash, snake, or spiral forward. Some glide slowly along a layer of slimelike material they secrete (4) C. Metabolic Diversity 1. No characteristic illustrates their diversity better than the ways in which they obtain energy. 2. Heterotrophs Most must take in organic molecules for both energy and a supply of carbon. These are called chemoheterotrophs. a) A smaller group are called photoheterotrophs. These organisms are photosynthetic, using sunlight for energy, but they also need to take in organic compounds as a carbon source. b) 3. Autotrophs Some autotrophs, the photoautotrophs, use light energy to convert carbon dioxide and water to carbon compounds and oxygen in a process similar to that used by green plants. a) These organisms are found in areas that light is plentiful, such as near the surfaces of lakes, streams, and oceans. (1) One group, the cyanobacteria, contains bluish pigment and chlorophyll a. (2) Other prokaryotes can perform chemosynthesis and are called chemoautotrops. b) (1) They do not require a light source of energy. Instead, they use energy directly from chemical reactions involving ammonia, hydrogen sulfide, nitrates, sulfur, or iron. (2) 4. Releasing Energy a) Like all organisms, bacteria need a constant supply of energy. This energy is released by the process of cellular respiration or fermentation or both. b) Organisms that require a constant supply of oxygen in order to live are called obligate aerobes. (Obligate means that the organisms are required by their life process to life only in that particular way.) c) d) Some do not require oxygen called obligate anaerobes. A third group of bacteria can survive with or without oxygen and are known as facultative anaerobes. (facultative means that the organism are able to function in different ways, depending on their environments. e) D. Growth and Reproduction 1. When conditions are favorable, bacteria can grow and divide at astonishing rates. Some divide as often as every 20 minutes! If unlimited space and food were available to a single bacterium and if all of its offspring divided every 20 minutes, in just 48 hours they would reach a mass approximately 4000 times the mass of Earth! Binary Fission—Type of asexual reproduction in which an organism replicates its DNA and divides in half, production two identical daughter cells. a) b) Conjugation (1) Many bacteria are also able to exchange genetic information. A hollow bridge forms between two bacterial cells, and genes move from one cell to the other (2) c) Spore Formation When growth conditions become unfavorable, many bacteria form structures called spores. (1) One type of spore, called an endospore, is formed when a bacterium produces a thick internal wall that encloses its DNA and a portion of its cytoplasm. (2) Spores can remain dormant for months or even years while waiting for more favorable growth conditions. (3) E. Importance of Bacteria 1. Bacteria are vital to maintaining the living world. Some are producers that capture energy by photosynthesis. Others are decomposes that break down the nutrients in dead matter and the atmosphere. Still other bacteria have human uses. a) Decomposers Every living thing depends directly or indirectly on a supply of raw materials. (1) If these materials were lost when an organism died, life could not continue. (2) b) Nitrogen Fixers (1) Plants and animals depend on bacteria for nitrogen. The process of converting nitrogen gas into a form plants can use is known as nitrogen fixation. (2) c) Human Uses of Bacteria Bacteria are used in the production of a wide variety of foods and beverages (1) (2) One can be used to clean up small oil spills (3) Some remove waste products and poisons from water (4) Other can help to mine minerals (5) Some are used to synthesize drugs and chemicals E. coli is found in the human intestines and make a number of vitamins that the body cannot produce itself. (6) II. Viruses A. What Is a Virus? 1. Viruses are particles of nucleic acid, protein, and in some cases lipids. 2. Viruses can reproduce only by infecting living cells. 3. Viruses differ widely in terms of size and structure. 4. They all have one thing in common: They enter living cells and, once inside, use the machinery of the infected cell to produce more viruses. 5. A typical virus is composed of a core of DNA or RNA surrounded by a protein coat. 6. A virus’s protein coat is called its capsid. 7. The capsid proteins of a typical virus bind to receptors on the surface of a cell and “trick” the cell into allowing it inside. 8. Because viruses must bind precisely to proteins on the cell surface and then use a host’s genetic system, most viruses are highly specific to the cells they infect. 9. Viruses that infect bacteria are called bacteriophages. B. Viral Infection 1. Once the virus is inside the host cell, two different processes may occur. a) Lytic Infection In a laytic infection, a virus enters a cell, makes copies of itself, and causes the cell to burst. (1) The virus uses the materials of the host cell to make thousands of copies of its own DNA molecule. (2) Before long, the infected cell lyses, or bursts, and releases hundreds of virus particles that may go on to infect other cells. (3) Because the host cell is lysed and destroyed, this process is called a lytic infection. (4) b) Lysogenic Infection Other viruses causes lysogenic infections in which a host cell makes copies of the virus indefinitely. (1) In a lysogenic infection, a virus integrates its DNA into the DNA of the host cell, and the viral genetic information replicates along with the host cell’s DNA. (2) Unlike lytic viruses, lysogenic viruses do not lyse the host cell right away. Instead, a lysogenic virus remains inactive for a period of time. (3) The viral DNA that is embedded in the host’s DNA is called a prohpage. (4) The prophage may remain part of the DNA of the host cell for many generations before becoming active. (5) 2. The steps of lytic and lysogenic infections may be different from those of other viruses when they attack eukaryotic cells. 3. Most animal viruses, however, show patterns of infection similar to either the lytic or lysogenic patterns of infection of bacteria. C. Retroviruses 1. Some viruses contain RNA as their genetic information and are called retroviruses. 2. When retroviruses infect a cell, they produce a DNA copy of their RNA. 3. This DNA, much like a prophage, is inserted into the DNA of the host cell. 4. There the retroviruses may remain dormant for varying lengths of time before becoming active, directing the production of new viruses, and causing the death of the host cell. 5. Retroviruses are responsible for some types of cancer in animals, including humans. 6. The virus that causes acquired immune deficiency syndrome (AIDS) is a retrovirus. D. Viruses and Living Cells 1. Viruses must infect a living cell in order to grow and reproduce. 2. They also take advantage of the host’s respiration, nutrition, and all the other functions that occur in living things. 3. Therefore, viruses can be considered to be parasites. 4. Are viruses alive? If we require living things be made up of cells and be able to live independently, then viruses are not alive. a) b) Yet, viruses have many of the characteristics of living things. c) Viruses are at the borderline of living and nonliving things. III. Diseases Caused by Bacteria and Viruses A. Bacteria and viruses are everywhere in nature, but only a few cause disease. However, these pathogens, or disease-causing agents, get all the attention. B. Bacterial Disease in Humans 1. Many bacteria live on and within our bodies, and some bacteria even help us to perform essential functions, such as digesting food. 2. Bacteria produce disease in one of two general ways. Some bacteria damage the cells and tissues of the infected organism directly by breaking down the cells for food. a) The bacterium Mycobacterium tuberculosis, which causes tuberculosis, is inhaled into the lungs, where it destroys the lung tissue. (1) The bacterium may also enter a blood vessel and travel to new sites in the body where it destroys more tissue. (2) Other bacteria release toxins (poisons) that travel throughout the body interfering with the normal activity of the host. b) (1) Bacterial toxins can travel throughout the body. The Streptococcus bacterium that causes strep throat can release toxins into the bloodstream. (2) These toxins can cause scarlet fever, a red rash appears on the skin. (3) c) Preventing Bacterial Disease Many bacterial disease can be prevented by stimulating the body’s immune system with vaccines. (1) (2) A vaccine is a preparation of weakened or killed pathogens. When injected into the body, a vaccine sometimes prompts the body to produce immunity to the disease. (3) (4) Immunity is the body’s ability to destroy new pathogens. If a bacterial infection does occur, a number of drugs can be used to attach and destroy the invading bacteria. (5) These drugs include antibiotics, such as penicillin and tetracycline. (6) Antibiotics are compounds that block the growth and reproduction of bacteria. (7) C. Bacterial Disease in Animals 1. Animals are also affected by bacterial diseases, requiring farmers and ranchers to take precautions to protect their livestock from infection. 2. Adding to the danger is the fact that many bacteria can affect both humans and animals. One example of such a bacterium is Bacillus anthracis, which causes the disease known as anthrax. a) Anthrax infections are often found in sheep, sometimes spreading to farmers and wool workers who have contact with the animals. b) c) Anthrax can be fatal to both humans and animals. The bacterium produces tough, resistant spores that can last for years. d) These properties have led some groups to develop anthrax as a biological warfare agent. e) D. Controlling Bacteria 1. Although most bacteria are harmless, and many are beneficial, the risks of bacterial infection are great enough to warrant efforts to control bacterial growth. 2. There are various methods used to control bacterial growth, including sterilization by heat, disinfectants, and food storage and processing. E. Viral Disease in Humans 1. Like bacteria, viruses produce disease by disrupting the body’s normal equilibrium. 2. In many viral infections, viruses attack and destroy certain cells in the body, causing the symptoms of the disease. 3. Other viruses cause infected cells to change their patterns of growth and development. 4. Viral disease CANNOT be treated by antibiotics. 5. Once a viral disease has been contracted, it may be too late to control the infection. However, sometimes the symptoms of the infection can be treated. F. Viral Disease in Animals 1. Viruses produce serious animal diseases as well. 2. An epidemic of foot-and-mouth disease, caused by a virus that infects livestock, swept through parts of Europe in the late 1990s. 3. Thousands of cattle were destroyed in efforts to control the disease. 4. American authorities took special precautions to guard against the spread of the foot-and-mouth virus to North America. G. Viral Disease in Plants 1. Unlike animal viruses, most plant viruses have a difficult time entering the cells they infect. 2. Many plant viruses are spread by insects. 3. Once inside the plant, many viruses spread rapidly, causing severe tissue damage, mottled leaves, and wilting, and sometimes killing the infected plant. 4. Plant viruses infect many valuable fruit trees, including apples and peaches, and have caused serious losses in the potato crop. H. Viroids and Prions 1. Scientists have discovered two other viruslike particles that also cause disease: viroids and prions. 2. Viroids cause disease in plants. Prions cause disease in animals Viroids—single-stranded RNA molecules that have no surrounding capsids. a) b) Prions—short for “protein infectious particles.”