PRO_00127_sm_suppMat

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Supporting Information

Figure S1 . Analytical HPLC profiles (

= 214 nm) together with ESI MS data (inset) corresponding to each major product of crude synthetic peptides: (a) N-terminus segment and (b) C-terminus segment, of

L-plectasin.

Figure S2.

Analytical HPLC profiles (

= 214 nm) together with ESI MS data (inset) corresponding to each major product of crude synthetic peptides: (a) N-terminus segment and (b) C-terminus segment, of

D-plectasin.

Figure S3.

Purified L-plectasin synthetic peptide segments: analytical HPLC profiles (

= 214 nm) together with ESI MS data (inset) corresponding to the purified (a) N-terminus segment (obs. 2249.0 Da, calc. 2249.3 Da (av isotopes)) and (b) C-terminus segment (obs. 2363.6 Da, calc. 2363.8 Da (av isotopes).

The minor earlier eluting peak in spectrum (a) corresponds to oxidized product containing Met(O).

Figure S4.

Purified D-plectasin synthetic peptide segments: analytical HPLC profiles (

= 214 nm) together with ESI MS data (inset) corresponding to the purified (a) N-terminus segment (obs. 2249.0 Da, calc. 2249.3 Da (av isotopes)) and (b) C-terminus segment (obs. 2363.6 Da, calc. 2363.8 Da (av isotopes)).

Figure S5.

Chemical synthesis of L-plectasin: analytical HPLC profiles (

= 214 nm) together with ESI

MS data (inset) corresponding to each major product for the ligation and folding. The chromatographic separations were performed using a linear gradient (5

65%) of buffer B in buffer A over 15 min (buffer

A = 0.1% trifluoroacetic acid (TFA) in water; buffer B = 0.08% TFA in acetonitrile) on a C-4 (Vydac),

2.1

150 mm column at 40 o

C. (a) Native chemical ligation of (Gly

1 

His

18

)

 

COSCH

2

CH

2

Ala-COOH

( 1 ) and (Cys

19

-Tyr

40 

COOH ( 2 ) at t = 3 min, 3 indicates the formation of a transthioesterified intermediate with 4-mercaptophenylacetic acid, 4 is the ligation product (Gly 1 

Tyr 40 ). (b) Native chemical ligation at 3 h showing the complete disappearance of 2 and formation of the ligation product 4 .

(c) Folding of the crude full-length linear L-peptide after solid phase extraction of the deformylated product. Folding was essentially complete within 3 h; the folded protein had an earlier elution time and a mass decrease of 34 Da compared to the formylated linear peptide; this corresponds to loss of formyl (28

Da) and the formation of three disulfides (loss of 6 Da). Asterisks (in a-b) indicate 4mercaptophenylacetic acid.

Figure S6. Chemical synthesis of D-plectasin: analytical HPLC profiles (

= 214 nm) together with ESI

MS data (inset) corresponding to each major product for the ligation and folding. The chromatographic separations were performed using a linear gradient (5

65%) of buffer B in buffer A over 15 min (buffer

A = 0.1% trifluoroacetic acid (TFA) in water; buffer B = 0.08% TFA in acetonitrile) at 40 o

C. (a) Native chemical ligation of (Gly

1 

His

18

)

 

COSCH

2

CH

2

Ala-COOH ( 1 ) and (Cys

19

-Tyr

40 

COOH ( 2 ) after 15 min, 3 indicates the formation of a transthioesterified intermediate with 4-mercaptophenylacetic acid

(MPAA), 4 is the ligation product (Gly

1 

Tyr

40

). (b) Native chemical ligation products after 3 h. (c)

Folding of the crude full-length linear D-peptide after solid phase extraction of the deformylated product.

Folding was essentially complete within 2 h; the folded protein had an earlier elution time and a mass decrease of 34 Da compared to the formylated linear peptide; this corresponds to loss of formyl (28 Da) and the formation of three disulfides (loss of 6 Da). Asterisks (in a-b) indicate MPAA. In-house packed

C-4, 2.1

100 mm column (in a ) with flow rate 0.4 mL/min and C-4 (Vydac), 2.1

150 mm column (in b and c ) with flow rate 0.5 mL/min was used for the chromatographic separation.

60

0

-20

40

20

L-plectasin

D-plectasin

-40

-60

208 218 228

Wavelength (nm)

238 248

Figure S7. Circular dichroism spectra of L-plectasin and D-plectasin. CD was recorded at room temperature using 131.7 µM of L-plectasin and 136.3 µM of D-plectasin solution in water. CD cuvette path length = 0.1 cm. Data shown 250-208 nm. Total number of scans = 10.

Figure S8.

Data for minimum inhibitory concentration (MIC) assay of plectasin enantiomers using

Staphylococcus aureus newman (MSSA).

Figure S9.

Data for minimum inhibitory concentration assay (MIC) of plectasin enantiomers using

Staphylococcus aureus USA300 (MRSA) and Bacillus cereus.

Table S1.

The X-ray data collection and refinement statistics for the crystal structures of plectasin.

Data collection

Space group

Cell dimensions

 a , b , c (Å)

      

(

)

Mol/asymmetric unit

Mol/unit cell

DL-plectasin*

P

1

23.6, 23.8, 24.5

109.7, 95.0, 97.7

L-plectasin

P6

1

54.0, 54.0, 22.0

90.0, 90.0, 120.0

Resolution (Å)

R merge

**

I /

I

Completeness (%)

1

2 (one D- and one Lmolecule)

50.00 - 1.00 (1.04 –

1.00)

0.068 (0.212)

12.0 (4.8)

83.2 (32.0)

1

6

50.00 - 1.35

(1.40 – 1.35)

0.076 (0.428)

23.3 (5.2)

99.1 (97.0)

Redundancy

Refinement

Resolution (Å)

No. reflections

R work/

R free

3.5 (2.2) 8.7 (7.5)

22.8 - 1.0 (1.03-1.00) 23.4 - 1.35

21051

0.202 / 0.224

Completeness (working + test, %) 83.2 (30.4)

(1.39-1.35)

7731

0.157 / 0.182

99.2 (96.1)

No. atoms

Protein

Water

Average B-factor (Å 2 )

R.m.s deviations

Bond lengths (Å)

Bond angles (º)

309

24

11.8

0.02

1.75

295

48

26.5

0.02

1.74

Number of crystals = 1 for each structure.

*The structure of the racemic plectasin was not refined with bulk solvent corrections due to the low solvent content of the crystal.

** R merge

= SUM ( ABS(I - <I>)) / SUM (I).

***Highest resolution shell is shown in parenthesis.

Table S2 I/Sigma in resolution shells for the L-plectasin structure collected to 1.2 Å resolution

Lower

Limit

50.00

2.59

2.05

1.79

1.63

1.51

1.42

1.35

1.29*

1.24*

All hkl

Shell

Upper

Limit

2.59

2.05

1.79

1.63

1.51

1.42

1.35

1.29

1.24

1.20

I/Sigma in resolution shells

% of of reflections with I / Sigma less than:

0

0.0

0.2

0.5

1.6

1.6

3.2

5.0

8.4

10.2

11.3

4.2

1

0.2

0.7

1.3

2.9

3.6

7.4

11.7

18.3

22.7

31.2

9.9

2

0.3

0.9

2.4

5.6

6.1

14.3

21.2

32.1

39.9

49.6

17.0

3

0.4

1.3

3.5

7.7

9.2

22.3

30.5

43.8

55.2*

64.0*

23.3

5

0.7

2.1

5.8

11.9

16.0

31.9

46.8

63.5

73.2

80.5

32.8

10

2.2

4.6

12.4

22.3

33.0

54.9

72.8

87.8

91.1

95.5

47.1

20

21.6

13.5

30.8

52.9

69.2

87.4

95.0

98.8

96.4

97.2

65.8

>20

77.8

86.4

68.7

46.5

29.9

11.1

3.1

0.9

0.2

0.0

33.0

Total

99.4

99.8

99.5

99.4

99.1

98.5

98.1

99.7

96.6

97.2

98.7

Table S3. Hydrogen bond lengths r (Å) at the interface between L-plectasin and D-plectasin enantiomers in space group P

1 shown in Figure 3A-3B

[a]

.

Protein Residue config. number

Residue detail r (Å) Residue detail

Residue number

Protein config.

L

Donor

38 LYS-NZ 2.58 PRO-O

Accepter

7 D

L

L

38

29

LYS-NZ

TYR-OH

2.86

2.50

GLU-OE1 10

GLU-OE2 10

D

D

Protein Residue config. number

Residue detail

Mediated by water molecule r (Å) Water r (Å) Residue detail

Residue Protein number config.

L 40 TYR-OXT 2.90 w2 2.73 TRP-NE1

2.86 CYS-O

8

30

D

D

L 32 LYS-N 2.70 w1 2.82

3.05

ASP-OD1

ASP-OD2

12

12

D

D

[a] Two enantiomers forming the interface are related by a center of symmetry. Each hydrogen bond interaction occurs twice at the interface. Only one half of the L-D pairs are listed. The second half may be derived by inverting the protein configuration.

Table S4. Hydrogen bond lengths r (Å) at the interface between two L-plectasin molecules in space group P6

1

shown in Figure 3C-3D.

Protein config.

Residue number

Residue detail r (Å) Residue detail

Residue Protein number config.

L

Donor

32 LYS-NZ

2.83

2.79

3.41

2.94 CYS-O

Acceptor

GLU-OE2 10

ASP-OD1 12

ASP-OD2 12

30

L

L

L

L

Protein Residue config. number

Residue detail

Mediated by water molecule r (Å) Water r (Å) Residue detail

Residue Protein number config.

L

L

38

32

LYS-NZ

LYS-O

3.19

2.89 w1 w2

2.68

3.22

ASP-OD2

TYR-OH

12

29

L

L

L 10 GLU-OE1 2.64

GLY-O w3

2.85 w4 [ a]

3.08 TYR-OH 40 L

L 33 w5 [ a]

2.68 TYR-OH 29 L

[a]

Two hydrogen-bonded (2.76 Å) waters w4 and w5 mediate contact between Gly33-O and Tyr29-OH.

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