Supplementary methods Liver tissue and hMSC Tissue was obtained with ethical approval and consent from the liver unit at Queen Elizabeth Hospital Birmingham, UK. Hepatectomy specimens were obtained from patients with primary biliary cirrhosis (PBC) or alcoholic liver disease (ALD). Donor tissue surplus to requirements served as normal controls (NL). hMSC from normal healthy donors were purchased from Lonza Group Ltd, and cultured in MSCGMTM Mesenchymal Stem Cell Growth Medium. Cells were designated P1 upon arrival and were used at P4. All experiments were repeated with multiple hMSC/liver donors. Human Hepatic Sinusoidal Endothelial Cell (HSEC) Isolation HSEC were isolated from 30g human liver tissue as described previously.1 HSEC were cultured in rat-tail collagen coated flasks in human basal endothelial media (Invitrogen) containing 10% heat inactivated human serum (HD Supplies, UK), glutamine, penicillin and streptomycin (292µg/ml, 100U/ml, 100µg/ml respectively, all Sigma, UK), hepatocyte growth factor (HGF) and vascular endothelial growth factor (VEGF) (both at 10ng/ml Peprotech). Differentiation Assays hMSC multipotency was demonstrated by tri-lineage differentiation to adipocytes, osteoblasts and chondrocytes using specific induction media from Lonza under manufacturer-specified conditions. Calcium production during osteoblastic differentiation was assayed using a Calcium Liquicolor Kit (Stanbio Laboratory). Adipogenic differentiation efficiency was assessed by Oil Red O staining of the lipid formed by the cells according to standard protocols. Chondrogenic differentiation was measured by immunostaining using a Collagen II antibody. Flow cytometric analysis of hMSCs To ensure the criterion for the definition of hMSCs, set by the Mesenchymal and Tissue Stem Cell Committee of the International Society for Cellular Therapy (ISCT)2 was met, hMSCs surface receptor expression was determined cytometrically using a hMSC Phenotyping kit (Miltenyi Biotec). To characterise hMSC integrin, chemokine receptor and CD44 expression, the hMSCs were also analysed by flow cytometry. hMSC were removed from the flask using TrypLE (Invitrogen) and resuspended in FACs buffer consisting of PBS plus 1% Foetal Calf Serum (FCS). 1x105 cells were transferred to FACs tubes and the recommended concentration of fluorescently-conjugated antibody was added and incubated for 20 minutes. Isotype matched antibodies determined background staining levels. See Supplementary Table 1 for antibodies used. Data collected was analyzed (Dako Cytomation CyAn-ADP) using Summit software (Dako Cytomation, UK). Modified Stamper-Woodruff/static adhesion assay on liver tissue sections 10µm sections were cut from snap frozen tissue. 1x105 hMSC were used per section. For blocking experiments, hMSC or sections (or combinations) were incubated with pre-determined optimal concentrations of blocking antibodies or isotype controls (Supplementary Table 1). To block G-protein coupled signalling, hMSC were incubated with a pre-determined optimal concentration of pertussis toxin (PTX; 100ng/ml; Sigma), shown to be effective upon other cell types in our laboratory,3, 4 for 30mins at 37°C. hMSC were incubated statically on sections for 30mins at room temperature, washed with phosphate-buffered saline (PBS) to remove non-adherent cells and acetone fixed. Some sections were immunostained for CD31 (Supplementary Table 1). Mayers Haematoxylin was used to identify the cells, which appear dark compared to the rest of the section and are in a different focus-plane. Adherent cells in 10 fields of view of both the parenchyma and portal tracts were counted on each section (magnification x200; Axioskop 40 Zeiss, UK). Sirius red staining of sections Sections were hydrated with distilled water then placed into 0.5% phosphomolybdic (PMA) for 5mins, before staining with 0.1% Sirius red (Direct red 80; % w/v in saturated picric acid) for 2hours. The slides were dipped in 0.01M HCL, before washing in distilled water. The sections were counterstained with Meyers Haematoxylin and mounted. Immunohistochemistry Sections that have previously been through the static adhesion assay were stained for CD31. Briefly, sections were incubated with CD31 antibody for 30minutes, washed to remove unbound antibody, detected with HRPconjugated secondary antibody and ImmPACT NovaRed substrate (Vectorlabs). Mayers Haematoxylin was used to identify hMSCs as per static adhesion assay method. Immunofluorescence 5µm frozen sections from the in vivo experiments were used for immunostaining. After equilibrating to room temperature, sections were blocked for 5 mins with 10% serum. Next the sections were incubated for 30 mins with primary antibody (Supplementary Table 1) at appropriate concentration. After washing, sections were incubated with fluorescentlyconjugated secondary antibody followed by DAPI as a nuclear counterstain. Sections were mounted in fluorescent mountant (DAKO), before viewing on a Zeiss LSM 510 UV confocal microscope. Chemotaxis assay Migration of hMSCs was assessed using modified Boyden chamber as previously described.15 The optimal determined concentration of soluble recombinant chemokines (CXCL12/SDF-1α; 10ng/ml, CCL22/MDC; 500ng/ml, CCL17/TARC; 100ng/ml, CCL8/MCP2; 100ng/ml, CCL4/MIP1β; 500ng/nl, CCL5/RANTES; 5-500ng/ml, CXCL11/ITAC; 500ng/ml) or control buffer (media alone) were placed into 6 replicate lower wells, separated by a polycarbonate membrane (8µm pores; Whatman International) from the hMSCs (1.5x106 cells/ml) in 50µl aliquots in the upper wells. The chamber was incubated overnight at 37°C. Non-migrated cells were scraped from the upper side of the membrane and the migrated cells on the lower surface were fixed in methanol and counterstained. Migrated cells were counted in 2 fields per well (200X magnification) and the average for the six replicates calculated. The chemotactic index (CI) or ratio of cells migrated in the presence versus absence of chemoattractant was determined for each optimal concentration of chemokine. Fluorescence intravital microscopy (IVM) IR injury was induced for 90minutes as previously described.5 The left lobe of the liver was exteriorised and one region of interest containing both a postsinusoidal venule and surrounding vessels was identified before systemic introduction of 1x106 CFSE-labelled hMSCs. This area was monitored throughout the experiment in order to determine adhesion dynamics. Recordings were made of the pre-selected area every 5 minutes from introduction of the cells at 30minutes post-reperfusion for 90minutes. At the end of the experiment, an additional six fields of view were selected to ensure that cell kinetics observed in the initial field were representative of events occurring in the entire liver. Images were analysed off-line (Slidebook; Intelligent Imaging Innovations, Denver, Colorado, USA). Determination of hMSC size Images of hMSCs in culture immediately after trypsinisation were taken and the size determined using a graticule (Pyser-SGI LTD). Size of hepaticresident hMSCs was determined using a scale bar and measuring diameter in a minimum of 10 fields of view. Statistical analysis Data were deemed normally distributed, then analysed by student T-test to determine statistical significance. Data are expressed as mean with standard errors. Bonferroni correction was used where multiple comparisons were undertaken. p=0.05 was considered significant and denoted by *. 1. 2. 3. 4. 5. Lalor PF, Sun PJ, Weston CJ, Martin-Santos A, Wakelam MJ, Adams DH. Activation of vascular adhesion protein-1 on liver endothelium results in an NF-kappaB-dependent increase in lymphocyte adhesion. Hepatology 2007;45:465-74. Dominici M, Le Blanc K, Mueller I, Slaper-Cortenbach I, Marini F, Krause D, Deans R, et al. Minimal criteria for defining multipotent mesenchymal stromal cells. The International Society for Cellular Therapy position statement. Cytotherapy 2006;8:315-7. Crosby HA, Lalor PF, Ross E, Newsome PN, Adams DH. Adhesion of human haematopoietic (CD34+) stem cells to human liver compartments is integrin and CD44 dependent and modulated by CXCR3 and CXCR4. J Hepatol 2009;51:734-49. Oo YH, Weston CJ, Lalor PF, Curbishley SM, Withers DR, Reynolds GM, Shetty S, et al. Distinct roles for CCR4 and CXCR3 in the recruitment and positioning of regulatory T cells in the inflamed human liver. J Immunol 2010;184:2886-98. Kavanagh DP, Durant LE, Crosby HA, Lalor PF, Frampton J, Adams DH, Kalia N. Haematopoietic stem cell recruitment to injured murine liver sinusoids depends on (alpha)4(beta)1 integrin/VCAM-1 interactions. Gut 2010;59:79-87.