WATER RESOURCES PROTECTION POLICY IMPLEMENTATION RESOURCE DIRECTED MEASURES FOR PROTECTION OF WATER RESOURCES RIVER ECOSYSTEMS Department of Water Affairs and Forestry South Africa REPORT NUMBER: N/29/99 STATUS: VERSION 1.0 DATE: 24 SEPTEMBER 1999 SENIOR AUTHORS (in alphabetical order): Dr A Bath, Ninham Shand Consulting Engineers Dr CJ Kleynhans, Department of Water Affairs and Forestry Ms MD Louw, IWR Environmental Dr H MacKay, Department of Water Affairs and Forestry Mr JN Rossouw, Ninham Shand Consulting Engineers Published by Department of Water Affairs and Forestry Private Bag X313 Pretoria 0001 Republic of South Africa Tel +27 (0)12 336 7500 ISBN X-XXXX-XXXX-X (Set) ISBN X-XXXX-XXXX-X (Volume 5) Copyright reserved No part of this publication may be reproduced in any manner without full acknowledgement of the source This document should be cited as: Department of Water Affairs and Forestry (1999). Resource Directed Measures for Protection of Water Resources. Volume 3: River Ecosystems Version 1.0, Pretoria. Senior Editor: Dr H M MacKay, Department of Water Affairs and Forestry, South Africa Produced by: Institute for Water Quality Studies Department of Water Affairs and Forestry Private Bag X313 Pretoria 0001 This document is one of a series of 15 volumes comprising the set: Resource Directed Measures for Protection of Water Resources. Volume 1: Resource Directed Measures - Summary of Policy (to be included in Version 1.1) Volume 2: Resource Directed Measures - Integrated Manual Volume 3: Resource Directed Measures - River Ecosystems Volume 4: Resource Directed Measures - Wetland Ecosystems Volume 5: Resource Directed Measures - Estuarine Ecosystems Volume 6: Resource Directed Measures - Groundwater Component Volume 7: Resource Directed Measures - Basic Human Needs (to be included in Version 1.1) Volume 8: Resource Directed Measures - Classification System for Water Resources Volume 9: Resource Directed Measures - Study Manager’s Manual (to be included in Version 1.1) Volume 10: Resource Directed Measures - Implementation Strategy (to be included in Version 1.1) Volume 11: Resource Directed Measures - Crocodile River Pilot Study 1998 (to be included in Version 1.1) Volume 12: Resource Directed Measures - Pienaars River Pilot Study 1999 (to be included in Version 1.1) Volume 13: Resource Directed Measures - Communication Strategy (to be included in Version 1.1) Volume 14: Resource Directed Measures - Capacity Building Strategy (to be included in Version 1.1) Volume 15: Resource Directed Measures - Project Management Summary (to be included in Version 1.1) Resource Directed Measures for Protection of Water Resources: River Ecosystems WATER RESOURCE PROTECTION AND ASSESSMENT POLICY IMPLEMENTATION PROCESS RESOURCE DIRECTED MEASURES FOR PROTECTION OF WATER RESOURCES: RIVER ECOSYSTEMS COMPONENT Report Number: N/29/99 Team Leaders: Ms MD Louw, IWR Environmental Mr JN Rossouw, Ninham Shand Consulting Engineers Senior Authors: Dr A Bath, Ninham Shand Consulting Engineers Dr CJ Kleynhans, Department of Water Affairs and Forestry Ms MD Louw, IWR Environmental Dr H MacKay, Department of Water Affairs and Forestry Mr JN Rossouw, Ninham Shand Consulting Engineers Editor: Dr Heather MacKay, Department of Water Affairs and Forestry Ms L Guest, Guest Environmental Management Version: Date: 1.0 24 September 1999-10-12 D:\..\f_rdm_october\rivers\version 1.0\riv_intro_version1.0.doc Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 i Resource Directed Measures for Protection of Water Resources: River Ecosystems Acknowledgements The following persons and organisations are thanked for their contributions to this project. PROJECT TEAM Project Manager: Dr H M MacKay, Institute for Water Quality Studies, Department of Water Affairs and Forestry Project Co-ordinator: Mr D F Grobler, Institute for Water Quality Studies, Department of Water Affairs and Forestry Project Administration: Ms O Shapo, Institute for Water Quality Studies, Department of Water Affairs and Forestry Ms C Nkwentsha, Institute for Water Quality Studies, Department of Water Affairs and Forestry Sub-Project Team Leaders: Dr J B Adams, University of Port Elizabeth Dr A Bath, Ninham Shand Mr T Duma, Institute for Water Quality Studies, Department of Water Affairs and Forestry Mr A Duthie, Oryx Environmental Ms S Fowkes, Metaplan Ms T Greyling, Manyaka Greyling Meiring Ms L Hill, Institute for Water Quality Studies, Department of Water Affairs and Forestry Ms M D Louw, IWR Environmental Mr J N Rossouw, Ninham Shand Mr D J Roux, Environmentek, CSIR Mr R Parsons, Parsons & Associates Ms C Thirion, Institute for Water Quality Studies, Department of Water Affairs and Forestry Ms B C Weston, Social and Ecological Services, Department of Water Affairs and Forestry Specialist Team Members (River Ecosystems): Dr P J Ashton, Environmentek CSIR Dr A Bath, Ninham Shand Consulting Engineers Dr A Birkhead, Streamflow Solutions Dr J Day, University of Cape Town Ms L Hill, Institute for Water Quality Studies, Department of Water Affairs and Forestry Mr B Hohls, Institute for Water Quality Studies, Department of Water Affairs and Forestry Mr G Huggins, IWR Environmental Prof D Hughes, Institute for Water Research Mr S Jooste, Institute for Water Quality Studies, Department of Water Affairs and Forestry Mr N Kemper, IWR Environmental Ms V Kilian, Department of Water Affairs and Forestry Dr C J Kleynhans, Institute for Water Quality Studies, Department of Water Affairs and Forestry Ms M D Louw, IWR Environmental Dr H MacKay, Institute for Water Quality Studies, Department of Water Affairs and Forestry Prof J O’Keeffe, Institute for Water Research Dr C G Palmer, Institute for Water Research Ms L Rossouw, MetsiQual Mr J N Rossouw, Ninham Shand Consulting Engineers Dr D J Roux, Environmentek CSIR Dr P-A Scherman, Institute for Water Research Ms R Tharme, Southern Waters Mr P van der Merwe, Department of Water Affairs and Forestry Dr R Wadeson, IWR Environmental Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 ii Resource Directed Measures for Protection of Water Resources: River Ecosystems STEERING COMMITTEE Dr H R van Vliet (Chair), Chief Director: Scientific Services, Department of Water Affairs and Forestry Mr J van Rooyen, Department of Water Affairs and Forestry Mr H Karodia, Department of Water Affairs and Forestry Mr M Warren, Department of Water Affairs and Forestry Mr P Viljoen, Department of Water Affairs and Forestry Dr S Mitchell, Water Research Commission Mr G Cowan, Department of Environment Affairs and Tourism Mr W S Rowlston, Department of Water Affairs and Forestry Mr P van Niekerk, Department of Water Affairs and Forestry Mr E Braune, Department of Water Affairs and Forestry Mr E Nel, Department of Water Affairs and Forestry Mr G McConkey, Department of Water Affairs and Forestry Mr Kelvin Legge, Department Of Water Affairs and Forestry EDITING TEAM Dr H MacKay, Institute for Water Quality Studies, Department of Water Affairs and Forestry Ms L Guest, Guest Environmental Management Dr G Pegram, Pula Strategic Resource Management Ms M de Lange, Socio Technical Interfacing Ms B Weston, Social and Ecological Services, Department of Water Affairs and Forestry Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 iii Resource Directed Measures for Protection of Water Resources: River Ecosystems Preface This set of documents on Resource Directed Measures (RDM) for protection of water resources, issued in September 1999 in Version 1.0, presents the procedures to be followed in undertaking preliminary determinations of the class, Reserve and resource quality objectives for water resources, as specified in sections 14 and 17 of the South African National Water Act (Act 36 of 1998). The development of procedures to determine RDM was initiated by the Department of Water Affairs and Forestry in July 1997. Phase 3 of this project will end in March 2000. Additional refinement and development of the procedures, and development of the full water resource classification system, will continue in Phase 4, until such time as the detailed procedures and full classification system are ready for publication in the Government Gazette. It should be noted that until the final RDM procedures are published in the Gazette, and prescribed according to section 12 of the National Water Act, all determinations of RDM, whether at the rapid, the intermediate or the comprehensive level, will be considered to be preliminary determinations. Version 1.0 of the RDM procedures is for internal use within the Department of Water Affairs and Forestry. It is a set of working documents which will be updated on a regular basis. This version retains editor’s comments in certain places in the text. Version 1.1 is expected to be finalised and published in December 1999, and will be released for public comment and discussion. All technical queries and comments related to Version 1.0 should be addressed to: Dr H M MacKay Department of Water Affairs and Forestry Private Bag X313 Pretoria 0001 South Africa Tel +27 12 336 8222 Fax+27 12 336 8678 email deh@dwaf.pwv.gov.za Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 iv Resource Directed Measures for Protection of Water Resources: River Ecosystems Abbreviations DWAF - Department of Water Affairs and Forestry EMC - Ecological Management Class IFR - Instream Flow Requirements RDM - Resource Directed Measures Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 v Resource Directed Measures for Protection of Water Resources: River Ecosystems Table of Contents Section A: Resource Directed Measures for River Ecosystems A.1 Different levels of RDM determinations A.2 The generic RDM methodology A2 A2 A3 Section B: Resource Directed Measures for River Ecosystems (to be included in version 1.1) Section C: Procedure for Desktop Estimate of the Water Quantity Component of the Ecological Reserve C.1 What is in this section C.2 Desktop Estimate of the Ecological Management Class C2 C2 C3 Section D: Procedure for Rapid Determination of RDM for River Ecosystems D.1 What is in this section D.2 Introduction D.3 Determination of the ecological management class D.4 Quantification of the Water Quantity Component of the Ecological Reserve D.5 Quantification of the Water Quality Component of the Ecological Reserve D2 D2 D2 D3 D4 D5 Section E: Procedure for Intermediate Determination of RDM for River Ecosystems E.1 What is in this section E.2 Overview of tasks in intermediate determination of RDM E2 E2 E2 Section F: Methodology for Comprehensive Determination of RDM for river ecosystems F.1 Overview F2 F2 Appendices Appendix R1: Preliminary Ecoregion Classification System for South Africa R1/2 Appendix R2: Stream Classification R2/2 Appendix R3: Desktop Level Estimate of the Present Ecological Status for use in the National Water Balance Model R3/2 Intermediate Habitat Integrity Assessment (for use in the rapid and intermediate habitat assessments) R4/2 Habitat Integrity Assessment for the Comprehensive Determination of the Ecological Reserve R5/2 Appendix R6: Procedure for assessing the present ecological status R6/2 Appendix R7: Assessment of Ecological Importance and Sensitivity R7/2 Appendix R8: Determination of the Social Importance of a Water Resource R8/2 Appendix R9: Incorporation of Economic Consideration into the RDM Determination: A Proposed Conceptual Approach R9/2 Appendix R4: Appendix R5: Appendix R13: A Decision Support System for an Initial Low-Confidence Estimate of the Quantity Component of the Ecological Reserve for Rivers Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 R13/2 vi Resource Directed Measures for Protection of Water Resources: River Ecosystems Appendix R16: Providing Hydrological Information and Data Analysis Tools for the Determination of Ecological Instream Flow Requirements for South African Rivers R16/2 The Procedure for Generating Hydraulic Information and Intermediate and Comprehensive Ecological Reserves (Quantity) R17/2 Appendix R18: Role of Geomorphology in Intermediate Ecological Reserve Determination R18/2 Appendix R19: The Procedure for Generating Riparian Vegetation Information for the Comprehensive and Intermediate Reserve (Quantity) R19/2 The Use of Ecological Information on Fish in the Specification of the Flow Component of the Reserve (Desktop, Rapid, Intermediate and Comprehensive Determinations R20/2 The Procedure for Generating Aquatic Invertebrate Information for the Intermediate and Comprehensive Ecological Reserve (Quantity) for Rivers R21/2 Procedure for Selecting Sites in Intermediate and Comprehensive Determination of the Ecological Reserve (Water Quantity Component) R22/2 Appendix R23: Resource Quality Objectives: Determination of Habitat Integrity Objectives R23/2 Appendix R24: Analysis of Previous IFR Results R24/2 Appendix R25: Giving Effect to the Reserve: Yield Modelling and Design of System Operating Rules R25/2 Using Ecological Management to derive integrated Resource Quality Objectives and the Ecological Reserve for Water Resources R29/2 Appendix R30: Breakdown and Scheduling of Tasks for Intermediate RDM Determination R30/2 Appendix 31: Design of Post – RDM Monitoring Programmes R31/2 Appendix R17: Appendix R20: Appendix R21: Appendix R22: Appendix R29: Figures Figure A1: Generic procedure for determination of Resource Directed Measures for aquatic ecosystems A4 Figure C1: Procedure followed in the determination of the AEMC C4 Figure C2: Flow diagram indicating the sequence of steps proposed for the determination of the attainable ecological management class in the determination of the WBDE. C7 Figure D1: Procedure followed in the determination of the AEMC D4 Figure E1: Task flow for intermediate RDM determination E3 Figure E2: Output of the IFR model as a time series E22 Figure E3: Output of an IFR workshop illustrated as a FDC (Note all numbers on axis are hypothetical and differ from river to river) E23 Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 vii Resource Directed Measures for Protection of Water Resources: River Ecosystems Tables Table A1: Levels of RDM procedures for various levels of RDM determinations Table A2: Master table of differences/similarities between RDM levels, broken down by steps Table C1: Ecological importance and sensitivity categories. C9 Table C2: Biotic determinants (instream and riparian) for assessment of ecological importance and sensitivity. C9 Table C3: A2 A22 Habitat (instream and riparian) determinants for assessment of ecological importance and sensitivity. C11 Table C4: Confidence ratings for biotic and habitat determinants. C13 Table C5: Ecological importance and sensitivity categories. Interpretation of median scores for biotic and habitat determinants. C14 Default ecological management classes for rivers (adapted from Kleynhans 1996 and Kleynhans et al. 1998). C15 The relationship between ecological importance and sensitivity categories and default ecological management classes. C15 Table C8: Default ecological status classes (adapted from Kleynhans 1996). C16 Table C9: The relationship between default ecological management classes and default ecological status classes. C16 Table C6: Table C7: Table C10: Attributes to be assessed for determination of present ecological status. C17 Table C11: Scoring and rating guidelines for present ecological status estimation (adapted from Kleynhans 1996). C18 Table C12: The assessment of the restoration potential of different aspects of the present ecological status class of rivers, as a basis for deriviation of the AEMC. C20 Table D1: Rapid present status assessment for total dissolved salts (TDS) D7 Table D2: Rapid present status assessment for pH in rivers. D8 Table D3: Rapid present status assessment for dissolved oxygen. D8 Table D4: Rapid present status assessment using the un-ionised ammonia concentration to assign assessment categories for rivers D9 Rapid present status assessment based on orthophosphate as a percentage of the total phosphorus content D10 Rapid present status assessment of nutrient content based on the N-P ratio (using TIN and TP) D10 Rapid present status assessment of nutrient status based on N-P ratio (using only orthophosphate data) D10 Documentation of present ecological status assessment – example D11 Table D5: Table D6: Table D7: Table D8: Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 viii Resource Directed Measures for Protection of Water Resources: River Ecosystems Table D9: Guide for rapid determination of the ecological Management Classes (water quality component) based on the ecological management class for the biota. D12 Table D10: Matrix for determination of the ecological Reserve (water quality)for system variables. D13 Table D11: Allowable deviation from the baseline water quality for selected ecological management classes (water quality) D13 Table D12: Nutrient water quality ranges for selected ecological management classes (water quality). D14 Table E1: Generally applicable reference conditions for nutrients E12 Table E2: Present status assessment categories for total dissolved salts (TDS) E13 Table E3: Present status assessment for pH in rivers. E14 Table E4: Present status assessment for dissolved oxygen. E14 TableE 5: Present status assessment for nutrients using the un-ionised ammonia concentration E15 Table E6: Present status assessment of nutrients based on orthophosphate as a percentage of the total phosphorus content E15 Table E7: Present status assessment of nutrients based on the N-P ratio (using TIN and TP) E16 Table E8: Present status assessment of nutrients based on N-P ratio (using only orthophosphate data) E16 Documentation of present ecological status - example E17 Table E9: Table E10: General assessment categories for ecological integrity. E18 Table E11: Tabulated output of the specialist workshop, providing the design IFRs. E21 Table E12: Guide for intermediate determination of ecological management classes (water quality) based on the ecological management class assigned for the biota.. E24 Table E13: System variable matrix for the assignment of the Reserve. E24 Table E14: Matrix for determination of the ecological Reserve (water quality) for pH and dissolved oxygen. E25 Table E15: Allowable deviation from of water temperature and TSS from reference conditions for selected ecological management classes (water quality). E25 Table E16: Nutrients water quality ranges for selected ecological management classes (water quality). E26 References Glossary Department of Water Affairs and Forestry, South Africa Version 1.0: 24 September 1999 ix