Publications:
1. Sukesh R. Bhaumik and H. M. Sonawat (1994). Pyruvate metabolism in
Halobacterium salinarium studied by intracellular 13C nuclear magnetic resonance
spectroscopy. Journal of Bacteriology 176: 2172-2176.
2. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1995). NMR
characterization of a triple stranded complex formed by homo-purine and
homopyrimidine DNA strands at 1:1 molar ratio and acidic pH. Nucleic Acids Research
23: 4116-4121.
3. Sukesh R. Bhaumik (1996). Conformational feasibility of a DNA hairpin with onebase loop. Biochemical and Biophysical Research Communications 220: 853-857.
4. K. V. R. Chary, Sukesh R. Bhaumik, G. Govil, K. Liu and H. T. Miles (1996). DNA
strands complementary in parallel orientation, form an antiparallel duplex at neutral pH
with A-C, G-T and T-C mismatched base pairs. Progress in Biophysics and Molecular
Biology 65: PB 123.
5. Sukesh R. Bhaumik, Anil Saran and G. Govil (1996). PCILO investigations on the
conformation of two-base hairpin loop in DNA. Chemical Physics 204: 205-211.
6. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1996). NMR
characterization of a triple stranded complex formed by homo-purine and
homopyrimidine DNA strands at 1:1 molar ratio and acidic pH. Progress in Biophysics
and Molecular Biology 65: PB 124.
7. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1997).
Homopurine and Homopyrimidine strands complementary in parallel orientation form an
antiparallel duplex at neutral pH with A-C, G-T and T-C mismatched base pairs.
Biopolymers 41: 773-784.
8. Sukesh R. Bhaumik, K. V. R. Chary, G. Govil, K. Liu and H. T. Miles (1998). A
novel palindromic triple-stranded structure formed by homopyrimidine dodecamer dCTTCTCCTCTTC and homopurine hexane d-GAAGAG. Nucleic Acids Research 26:
2981-2988.
9. Sukesh R. Bhaumik and K. V. R. Chary (1998). A-C mismatched base pairing in
DNA. Current Science (India) 74: 1008-1012.
10. Sukesh R. Bhaumik, K. V. R. Chary and G. Govil (1998). Molecular mechanics
calculations on a triple stranded DNA involving C.G-T and T.A -C mismatched base
triples. Journal of Biomolecular Structure and Dynamics 16: 527-534.
11. Sukesh R. Bhaumik and H. M. Sonawat (1999). Kinetic mechanism of glucose
dehydrogenase from Halobacterium salinarum. Indian Journal of Biochemistry and
Biophysics 36: 143-149.
12. Sukesh R. Bhaumik and H. M. Sonawat (1999). Glucose Dehydrogenase from
Halobacterium salinarum: Fluorescence Quenching and Binding to NADPH.
Physiological Chemistry Physics & Medical NMR 31: 85-92.
13. Sukesh R. Bhaumik, Xiao-Yong Li, and Michael R. Green (2000). Distinct
Classes of Yeast Promoters Revealed by Differential TAF Recruitment. Science 288:
1242-1244 (These authors contributed equally).
14. Sukesh R. Bhaumik and Michael R. Green (2001). SAGA is an essential in vivo
target of the yeast acidic activator Gal4p. Genes and Development 15: 1935-1945.
15. Parvathy V. R., Sukesh R. Bhaumik, Kandala V.R. Chary, Girjesh Govil, Keliang
Liu, Frank B. Howard and H. Todd Miles (2002). NMR structure of a parallel-stranded
DNA duplex at atomic resolution. Nucleic Acids Research 30: 1500-1511.
16. Xiao-Yong Li, Sukesh R. Bhaumik, Xiaocun Zhu, Lei Li, Wu-Cheng Shen, Bharat
L. Dixit and Michael R. Green (2002). Selective recruitment of TAFs by upstream
activating sequences: Implications for eukaryotic promoter structure. Current Biology
12: 1240–1244.
17. Sukesh R. Bhaumik and Kandala V. R. Chary (2002). Molecular dynamics and
mechanics calculations on a DNA duplex with A+-C, G-T and T-C mispairs. Journal of
Biomolecular Structure and Dynamics 20: 199-206.
18. Sukesh R. Bhaumik and Michael R. Green (2002). Differential requirement of
SAGA components for recruitment of TATA-box-binding protein to promoters in vivo.
Molecular and Cellular Biolog 22: 7365-7371.
19. Sukesh R. Bhaumik and Michael R. Green (2003). Interaction of Gal4p with
components of the transcription machinery in vivo. Methods in Enzymology 370: 445454.
20. Sukesh R. Bhaumik, Wu-Cheng Shen, Helen C. Causton, Itamar Simon,
Xiaochung Zhu, Ezra G. Jennings, Tzang-Shing Wang, Richard A. Young and Michael
R. Green (2003). Comprehensive analysis of essential yeast TAFs in genome-wide
transcription and pre-initiation complex assembly. EMBO Journal 22: 3395-3402.
(These authors contributed equally).
21. Sukesh R. Bhaumik, Tamal Raha and Michael R. Green (2003). In vivo target of a
transcriptional activator revealed by fluorescence resonance energy transfer. (manuscript
under revision).
(These authors contributed equally).